Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 CFC1-202ENST00000615342 1554 ntTSL 5 BASIC15.84■□□□□ 0.13
COL8A1P27658 CSPG5-203ENST00000456150 2089 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
COL8A1P27658 TMEM205-201ENST00000354882 1034 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
COL8A1P27658 AC254562.1-201ENST00000417586 456 ntBASIC15.84■□□□□ 0.13
COL8A1P27658 DARS-AS1-203ENST00000438432 768 ntTSL 3 BASIC15.84■□□□□ 0.13
COL8A1P27658 RDH5-202ENST00000547072 1054 ntTSL 5 BASIC15.84■□□□□ 0.13
COL8A1P27658 AL450267.1-201ENST00000557174 520 ntTSL 5 BASIC15.84■□□□□ 0.13
COL8A1P27658 IFT20-209ENST00000579419 787 ntAPPRIS ALT1 TSL 3 BASIC15.84■□□□□ 0.13
COL8A1P27658 TMEM205-205ENST00000586590 677 ntAPPRIS P1 TSL 5 BASIC15.84■□□□□ 0.13
COL8A1P27658 TMEM205-207ENST00000586956 1003 ntAPPRIS P1 TSL 2 BASIC15.84■□□□□ 0.13
COL8A1P27658 FUT6-212ENST00000592563 1095 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
COL8A1P27658 COPE-211ENST00000600932 1144 ntTSL 5 BASIC15.84■□□□□ 0.13
COL8A1P27658 TRIM29-221ENST00000627238 510 ntTSL 5 BASIC15.84■□□□□ 0.13
COL8A1P27658 CLN3-255ENST00000637100 1284 ntTSL 5 BASIC15.84■□□□□ 0.13
COL8A1P27658 CLIP2-201ENST00000223398 5563 ntAPPRIS P1 TSL 5 BASIC15.84■□□□□ 0.13
COL8A1P27658 PCED1A-201ENST00000356872 1706 ntTSL 2 BASIC15.84■□□□□ 0.13
COL8A1P27658 ZDHHC4-206ENST00000405731 1348 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
COL8A1P27658 KMT5C-201ENST00000255613 2308 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
COL8A1P27658 EOMES-202ENST00000449599 2829 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
COL8A1P27658 AZIN1-201ENST00000337198 4721 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
COL8A1P27658 YIF1B-204ENST00000392124 1404 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
COL8A1P27658 CACNB2-203ENST00000352115 1911 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
COL8A1P27658 DHRS12-201ENST00000218981 1970 ntTSL 2 BASIC15.84■□□□□ 0.13
COL8A1P27658 CDCA4-201ENST00000336219 2513 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
COL8A1P27658 FUCA1-201ENST00000374479 2047 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
COL8A1P27658 C12orf42-201ENST00000378113 1513 ntAPPRIS P2 TSL 5 BASIC15.84■□□□□ 0.13
COL8A1P27658 KCTD1-202ENST00000408011 2103 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.13
COL8A1P27658 CNTNAP3B-202ENST00000341990 2666 ntTSL 2 BASIC15.83■□□□□ 0.13
COL8A1P27658 CADPS2-201ENST00000313070 6065 ntTSL 5 BASIC15.83■□□□□ 0.13
COL8A1P27658 TPBGL-201ENST00000562197 2793 ntAPPRIS P1 BASIC15.83■□□□□ 0.13
COL8A1P27658 DAG1-219ENST00000538711 5582 ntAPPRIS P1 TSL 5 BASIC15.83■□□□□ 0.13
COL8A1P27658 TMSB4X-203ENST00000380636 1702 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.13
COL8A1P27658 PCDHAC2-203ENST00000615316 3011 ntBASIC15.83■□□□□ 0.12
COL8A1P27658 AQP12A-201ENST00000337801 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC15.83■□□□□ 0.12
COL8A1P27658 MFSD13A-202ENST00000369931 823 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
COL8A1P27658 SNHG11-205ENST00000421599 1046 ntTSL 3 BASIC15.83■□□□□ 0.12
COL8A1P27658 ABCD1P5-201ENST00000445663 754 ntBASIC15.83■□□□□ 0.12
COL8A1P27658 MEAF6-205ENST00000448519 666 ntAPPRIS ALT1 TSL 1 (best) BASIC15.83■□□□□ 0.12
COL8A1P27658 AP005717.1-202ENST00000523563 419 ntTSL 3 BASIC15.83■□□□□ 0.12
COL8A1P27658 BLOC1S6-214ENST00000567461 1052 ntTSL 2 BASIC15.83■□□□□ 0.12
COL8A1P27658 MTDHP4-201ENST00000600287 670 ntBASIC15.83■□□□□ 0.12
COL8A1P27658 AC114488.2-214ENST00000609033 813 ntTSL 5 BASIC15.83■□□□□ 0.12
COL8A1P27658 RAB34-226ENST00000636772 1180 ntTSL 5 BASIC15.83■□□□□ 0.12
COL8A1P27658 RREB1-201ENST00000334984 5789 ntAPPRIS ALT2 TSL 1 (best) BASIC15.83■□□□□ 0.12
COL8A1P27658 FIP1L1-207ENST00000507922 1335 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
COL8A1P27658 AL512408.1-201ENST00000569378 2000 ntBASIC15.83■□□□□ 0.12
COL8A1P27658 HFE2-204ENST00000475797 1381 ntTSL 2 BASIC15.83■□□□□ 0.12
COL8A1P27658 OTOP2-201ENST00000331427 2147 ntAPPRIS P1 TSL 5 BASIC15.83■□□□□ 0.12
COL8A1P27658 CD209-210ENST00000601951 1439 ntAPPRIS ALT2 TSL 1 (best) BASIC15.83■□□□□ 0.12
COL8A1P27658 KLRG2-201ENST00000340940 2197 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
COL8A1P27658 PDZD3-201ENST00000322712 2204 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
COL8A1P27658 USP21-203ENST00000368002 2342 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
COL8A1P27658 LGI3-202ENST00000424267 3114 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
COL8A1P27658 ALDH2-202ENST00000416293 1572 ntTSL 2 BASIC15.83■□□□□ 0.12
COL8A1P27658 MZF1-203ENST00000594234 2385 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
COL8A1P27658 CRTC1-203ENST00000594658 2384 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
COL8A1P27658 HIKESHI-207ENST00000533986 1694 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
COL8A1P27658 WAC-205ENST00000375664 5924 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
COL8A1P27658 CYP2F1-201ENST00000331105 1720 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
COL8A1P27658 PMPCB-202ENST00000428154 1714 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
COL8A1P27658 ZNF561-AS1-204ENST00000587536 1799 ntTSL 2 BASIC15.82■□□□□ 0.12
COL8A1P27658 AP5S1-203ENST00000379573 1848 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
COL8A1P27658 CHTOP-207ENST00000614256 1840 ntTSL 3 BASIC15.82■□□□□ 0.12
COL8A1P27658 SYTL1-210ENST00000616558 1878 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
COL8A1P27658 WDSUB1-202ENST00000359774 1912 ntAPPRIS P1 TSL 5 BASIC15.82■□□□□ 0.12
COL8A1P27658 CBR1-205ENST00000530908 1924 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
COL8A1P27658 COL5A3-201ENST00000264828 6174 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
COL8A1P27658 SMPD1-203ENST00000527275 2188 ntAPPRIS P3 TSL 2 BASIC15.82■□□□□ 0.12
COL8A1P27658 PIF1-202ENST00000333425 2278 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
COL8A1P27658 SAE1-203ENST00000413379 2313 ntTSL 2 BASIC15.82■□□□□ 0.12
COL8A1P27658 UPK2-201ENST00000264031 916 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
COL8A1P27658 NUDT6-201ENST00000304430 1169 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
COL8A1P27658 HIST1H2BD-202ENST00000377777 496 ntAPPRIS P1 BASIC15.82■□□□□ 0.12
COL8A1P27658 TNNT3-203ENST00000381557 1019 ntAPPRIS ALT2 TSL 5 BASIC15.82■□□□□ 0.12
COL8A1P27658 DMKN-206ENST00000418261 1257 ntAPPRIS ALT2 TSL 1 (best) BASIC15.82■□□□□ 0.12
COL8A1P27658 MCCD1P2-201ENST00000423228 335 ntBASIC15.82■□□□□ 0.12
COL8A1P27658 AL162231.1-204ENST00000423809 477 ntAPPRIS ALT2 TSL 3 BASIC15.82■□□□□ 0.12
COL8A1P27658 AC092474.2-201ENST00000424288 719 ntBASIC15.82■□□□□ 0.12
COL8A1P27658 RNASE10-202ENST00000430083 1172 ntTSL 2 BASIC15.82■□□□□ 0.12
COL8A1P27658 YBX1P5-201ENST00000509441 847 ntBASIC15.82■□□□□ 0.12
COL8A1P27658 EFCAB1-209ENST00000523092 648 ntTSL 2 BASIC15.82■□□□□ 0.12
COL8A1P27658 SFTPC-210ENST00000524255 681 ntTSL 2 BASIC15.82■□□□□ 0.12
COL8A1P27658 AC026336.2-201ENST00000563922 763 ntTSL 2 BASIC15.82■□□□□ 0.12
COL8A1P27658 NKAPP1-205ENST00000585790 367 ntBASIC15.82■□□□□ 0.12
COL8A1P27658 AC074135.2-201ENST00000600896 510 ntTSL 3 BASIC15.82■□□□□ 0.12
COL8A1P27658 AC097374.2-201ENST00000618617 1306 ntBASIC15.82■□□□□ 0.12
COL8A1P27658 ANKRD16-203ENST00000380094 2738 ntAPPRIS P1 TSL 2 BASIC15.82■□□□□ 0.12
COL8A1P27658 PLCD1-201ENST00000334661 2769 ntAPPRIS P3 TSL 1 (best) BASIC15.82■□□□□ 0.12
COL8A1P27658 CHST11-201ENST00000303694 5709 ntAPPRIS P3 TSL 1 (best) BASIC15.82■□□□□ 0.12
COL8A1P27658 RPRM-201ENST00000325926 1471 ntAPPRIS P1 BASIC15.82■□□□□ 0.12
COL8A1P27658 GPX3-209ENST00000614343 1478 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
COL8A1P27658 CRLF3-201ENST00000324238 2957 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
COL8A1P27658 PDIA2-202ENST00000404312 1575 ntAPPRIS ALT2 TSL 5 BASIC15.82■□□□□ 0.12
COL8A1P27658 HS3ST4-201ENST00000331351 3203 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
COL8A1P27658 ACBD6-201ENST00000367595 1670 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
COL8A1P27658 SCRIB-201ENST00000320476 5143 ntAPPRIS ALT2 TSL 1 (best) BASIC15.82■□□□□ 0.12
COL8A1P27658 RRS1-201ENST00000320270 1706 ntAPPRIS P1 BASIC15.82■□□□□ 0.12
COL8A1P27658 SLC22A18-203ENST00000380574 1755 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
COL8A1P27658 ZNF821-221ENST00000611294 1833 ntTSL 3 BASIC15.82■□□□□ 0.12
COL8A1P27658 SASH1-201ENST00000367467 7711 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Retrieved 100 of 98,524 protein–RNA pairs in 24 ms