Protein–RNA interactions for Protein: O00479

HMGN4, High mobility group nucleosome-binding domain-containing protein 4, humanhuman

Predictions only

Length 90 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN4O00479 CXADR-204ENST00000400166 1080 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
HMGN4O00479 AC002467.1-201ENST00000457510 657 ntTSL 3 BASIC16.94■□□□□ 0.3
HMGN4O00479 REEP1-207ENST00000535845 1196 ntTSL 2 BASIC16.94■□□□□ 0.3
HMGN4O00479 REEP1-209ENST00000541910 969 ntTSL 2 BASIC16.94■□□□□ 0.3
HMGN4O00479 NEK4P2-201ENST00000580004 1012 ntBASIC16.94■□□□□ 0.3
HMGN4O00479 BCL2L12-208ENST00000600947 633 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
HMGN4O00479 RASL11B-201ENST00000248706 1995 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
HMGN4O00479 PIF1-201ENST00000268043 2687 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
HMGN4O00479 B3GNT9-201ENST00000449549 2917 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
HMGN4O00479 SLC43A1-201ENST00000278426 2598 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
HMGN4O00479 CXXC5-211ENST00000511048 1892 ntAPPRIS P1 TSL 2 BASIC16.94■□□□□ 0.3
HMGN4O00479 KRT18P55-202ENST00000578578 1546 ntBASIC16.94■□□□□ 0.3
HMGN4O00479 CCDC137-201ENST00000329214 2468 ntAPPRIS P2 TSL 1 (best) BASIC16.94■□□□□ 0.3
HMGN4O00479 CTSA-204ENST00000372484 2149 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
HMGN4O00479 RAP1GDS1-201ENST00000264572 1686 ntTSL 5 BASIC16.94■□□□□ 0.3
HMGN4O00479 CXXC1-202ENST00000412036 2280 ntAPPRIS ALT1 TSL 1 (best) BASIC16.94■□□□□ 0.3
HMGN4O00479 TP73-AS1-203ENST00000423764 2875 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
HMGN4O00479 IL18BP-207ENST00000404792 2172 ntAPPRIS P2 TSL 1 (best) BASIC16.94■□□□□ 0.3
HMGN4O00479 PLD3-206ENST00000409587 2180 ntAPPRIS P1 TSL 5 BASIC16.94■□□□□ 0.3
HMGN4O00479 GPANK1-202ENST00000375895 1800 ntAPPRIS P1 TSL 5 BASIC16.93■□□□□ 0.3
HMGN4O00479 KDELC1-201ENST00000376004 2060 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
HMGN4O00479 MMP9-201ENST00000372330 2336 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
HMGN4O00479 AGPAT3-201ENST00000291572 5546 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
HMGN4O00479 LUC7L-201ENST00000293872 1456 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
HMGN4O00479 NUMBL-207ENST00000598779 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC16.93■□□□□ 0.3
HMGN4O00479 SATB2-203ENST00000428695 2135 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
HMGN4O00479 STAMBPL1-203ENST00000371926 2532 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
HMGN4O00479 CDH22-203ENST00000537909 3902 ntAPPRIS P1 TSL 2 BASIC16.93■□□□□ 0.3
HMGN4O00479 Telomerase-vert.1-201ENST00000363312 438 ntBASIC16.93■□□□□ 0.3
HMGN4O00479 COL11A2-204ENST00000395194 1194 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
HMGN4O00479 AL596275.1-201ENST00000423464 877 ntBASIC16.93■□□□□ 0.3
HMGN4O00479 AL162457.2-201ENST00000447909 937 ntTSL 3 BASIC16.93■□□□□ 0.3
HMGN4O00479 KRT8P12-201ENST00000468527 998 ntTSL 2 BASIC16.93■□□□□ 0.3
HMGN4O00479 EHMT1-211ENST00000482340 691 ntTSL 5 BASIC16.93■□□□□ 0.3
HMGN4O00479 LINC01024-205ENST00000521563 939 ntTSL 3 BASIC16.93■□□□□ 0.3
HMGN4O00479 C12orf43-206ENST00000537817 1270 ntAPPRIS ALT2 TSL 1 (best) BASIC16.93■□□□□ 0.3
HMGN4O00479 PRTN3-202ENST00000544537 1036 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
HMGN4O00479 AC015712.4-203ENST00000559673 630 ntTSL 3 BASIC16.93■□□□□ 0.3
HMGN4O00479 RNF187-203ENST00000639044 708 ntAPPRIS P2 TSL 1 (best) BASIC16.93■□□□□ 0.3
HMGN4O00479 SLCO6A1-201ENST00000379807 2437 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
HMGN4O00479 CLDND1-204ENST00000394185 2159 ntAPPRIS P1 TSL 5 BASIC16.93■□□□□ 0.3
HMGN4O00479 RABEP2-202ENST00000358201 2821 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
HMGN4O00479 GMDS-208ENST00000530927 1440 ntAPPRIS ALT2 TSL 1 (best) BASIC16.93■□□□□ 0.3
HMGN4O00479 WNT5B-203ENST00000537031 1437 ntAPPRIS P1 TSL 2 BASIC16.93■□□□□ 0.3
HMGN4O00479 AC006116.8-202ENST00000587620 1550 ntBASIC16.93■□□□□ 0.3
HMGN4O00479 RAB17-201ENST00000264601 1966 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
HMGN4O00479 MTHFD2L-203ENST00000395759 2354 ntAPPRIS P2 TSL 5 BASIC16.93■□□□□ 0.3
HMGN4O00479 CCDC120-204ENST00000597275 2752 ntAPPRIS P3 TSL 2 BASIC16.93■□□□□ 0.3
HMGN4O00479 CDHR1-201ENST00000332904 2694 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
HMGN4O00479 ZNF133-212ENST00000622607 2660 ntAPPRIS ALT2 TSL 4 BASIC16.93■□□□□ 0.3
HMGN4O00479 ISG20-201ENST00000306072 1856 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
HMGN4O00479 IVNS1ABP-202ENST00000367498 4199 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
HMGN4O00479 FAM69B-201ENST00000371691 2410 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
HMGN4O00479 DAG1-221ENST00000541308 5676 ntAPPRIS P1 TSL 5 BASIC16.92■□□□□ 0.3
HMGN4O00479 BPGM-202ENST00000393132 2051 ntAPPRIS P1 TSL 5 BASIC16.92■□□□□ 0.3
HMGN4O00479 CLDN9-201ENST00000445369 2050 ntAPPRIS P1 BASIC16.92■□□□□ 0.3
HMGN4O00479 LRRC23-202ENST00000323702 1208 ntAPPRIS ALT2 TSL 1 (best) BASIC16.92■□□□□ 0.3
HMGN4O00479 TRPT1-202ENST00000394546 1058 ntAPPRIS ALT1 TSL 5 BASIC16.92■□□□□ 0.3
HMGN4O00479 DHRS4L2-202ENST00000397071 1117 ntTSL 2 BASIC16.92■□□□□ 0.3
HMGN4O00479 PLEKHB2-203ENST00000404460 1167 ntTSL 2 BASIC16.92■□□□□ 0.3
HMGN4O00479 AC007563.2-201ENST00000447289 552 ntTSL 5 BASIC16.92■□□□□ 0.3
HMGN4O00479 ARPIN-202ENST00000460685 2145 ntTSL 2 BASIC16.92■□□□□ 0.3
HMGN4O00479 DCTN3-209ENST00000477738 713 ntTSL 3 BASIC16.92■□□□□ 0.3
HMGN4O00479 TRPT1-210ENST00000541278 941 ntTSL 2 BASIC16.92■□□□□ 0.3
HMGN4O00479 MIR3917-201ENST00000580971 93 ntBASIC16.92■□□□□ 0.3
HMGN4O00479 GPX4-207ENST00000589115 812 ntTSL 2 BASIC16.92■□□□□ 0.3
HMGN4O00479 SYNGR4-204ENST00000601610 859 ntTSL 3 BASIC16.92■□□□□ 0.3
HMGN4O00479 ARSI-203ENST00000515301 1429 ntTSL 4 BASIC16.92■□□□□ 0.3
HMGN4O00479 AC020661.1-201ENST00000503052 1584 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
HMGN4O00479 USP32-201ENST00000300896 5171 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
HMGN4O00479 RANBP10-201ENST00000317506 5341 ntAPPRIS P2 TSL 1 (best) BASIC16.92■□□□□ 0.3
HMGN4O00479 RANBP10-209ENST00000630626 5305 ntAPPRIS ALT2 TSL 5 BASIC16.92■□□□□ 0.3
HMGN4O00479 BTBD11-201ENST00000280758 5767 ntAPPRIS P3 TSL 5 BASIC16.92■□□□□ 0.3
HMGN4O00479 THAP12-201ENST00000260045 3300 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
HMGN4O00479 GINM1-201ENST00000367419 2024 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
HMGN4O00479 ALDH3B1-206ENST00000615463 1300 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
HMGN4O00479 COBLL1-201ENST00000342193 4898 ntAPPRIS P3 TSL 1 (best) BASIC16.92■□□□□ 0.3
HMGN4O00479 PDE9A-213ENST00000398236 1776 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
HMGN4O00479 ZNF200-202ENST00000396870 2373 ntAPPRIS ALT2 TSL 1 (best) BASIC16.92■□□□□ 0.3
HMGN4O00479 HDAC10-201ENST00000216271 2687 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
HMGN4O00479 KCNC4-204ENST00000438661 2953 ntAPPRIS ALT2 TSL 1 (best) BASIC16.92■□□□□ 0.3
HMGN4O00479 MFSD11-220ENST00000621483 2850 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
HMGN4O00479 RNF166-203ENST00000541206 2419 ntTSL 2 BASIC16.91■□□□□ 0.3
HMGN4O00479 NCCRP1-201ENST00000339852 1978 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
HMGN4O00479 SEMA6C-209ENST00000613223 1950 ntTSL 5 BASIC16.91■□□□□ 0.3
HMGN4O00479 IRGC-201ENST00000244314 1662 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
HMGN4O00479 KRT13-201ENST00000246635 1699 ntAPPRIS P4 TSL 1 (best) BASIC16.91■□□□□ 0.3
HMGN4O00479 ARFRP1-207ENST00000612157 1698 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
HMGN4O00479 L3HYPDH-201ENST00000247194 1527 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
HMGN4O00479 C22orf39-205ENST00000542103 1523 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
HMGN4O00479 LINC01568-207ENST00000641790 1380 ntBASIC16.91■□□□□ 0.3
HMGN4O00479 YPEL3-202ENST00000398841 1588 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
HMGN4O00479 ZCWPW1-202ENST00000398027 2356 ntAPPRIS P3 TSL 1 (best) BASIC16.91■□□□□ 0.3
HMGN4O00479 KLHDC4-227ENST00000622456 1422 ntTSL 5 BASIC16.91■□□□□ 0.3
HMGN4O00479 SPDYE2-201ENST00000341656 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
HMGN4O00479 RABL2A-202ENST00000393165 1118 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
HMGN4O00479 HMGB3P22-201ENST00000442010 597 ntTSL 2 BASIC16.91■□□□□ 0.3
HMGN4O00479 SPDYE2B-202ENST00000455020 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
HMGN4O00479 AC104596.1-202ENST00000507486 759 ntTSL 3 BASIC16.91■□□□□ 0.3
HMGN4O00479 CMTM3-210ENST00000565666 769 ntTSL 3 BASIC16.91■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 23.2 ms