Protein–RNA interactions for Protein: O00409

FOXN3, Forkhead box protein N3, humanhuman

Predicted RBP Predictions only

Length 490 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXN3O00409 STXBP2-202ENST00000414284 1859 ntAPPRIS ALT1 TSL 1 (best) BASIC19.49■□□□□ 0.71
FOXN3O00409 STARD10-218ENST00000543304 1513 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
FOXN3O00409 BMP8B-201ENST00000372827 4822 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
FOXN3O00409 RIOX2-201ENST00000333396 5347 ntAPPRIS ALT1 TSL 1 (best) BASIC19.49■□□□□ 0.71
FOXN3O00409 KRCC1-201ENST00000347055 1753 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
FOXN3O00409 UBE2D2-202ENST00000398733 2702 ntAPPRIS P2 TSL 1 (best) BASIC19.49■□□□□ 0.71
FOXN3O00409 AC073508.3-201ENST00000619697 1419 ntBASIC19.49■□□□□ 0.71
FOXN3O00409 GLB1-202ENST00000307377 2018 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
FOXN3O00409 REPS1-202ENST00000367663 2607 ntAPPRIS ALT1 TSL 5 BASIC19.49■□□□□ 0.71
FOXN3O00409 RNPS1-219ENST00000566397 1685 ntTSL 2 BASIC19.49■□□□□ 0.71
FOXN3O00409 NKD2-202ENST00000296849 2155 ntAPPRIS P3 TSL 1 (best) BASIC19.49■□□□□ 0.71
FOXN3O00409 GRIN3B-201ENST00000234389 3281 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
FOXN3O00409 TRMT6-201ENST00000203001 2327 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
FOXN3O00409 SPACA1-201ENST00000237201 1499 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
FOXN3O00409 CD40-202ENST00000372285 1729 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
FOXN3O00409 WNT9B-201ENST00000290015 1376 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
FOXN3O00409 ZDHHC20-201ENST00000320220 1351 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
FOXN3O00409 TREX2-201ENST00000330912 2262 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
FOXN3O00409 AP001922.1-201ENST00000499390 1504 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
FOXN3O00409 TERF1P1-201ENST00000311003 1181 ntBASIC19.48■□□□□ 0.71
FOXN3O00409 VKORC1-202ENST00000319788 1077 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
FOXN3O00409 AC211429.1-201ENST00000415277 523 ntBASIC19.48■□□□□ 0.71
FOXN3O00409 AL136307.1-201ENST00000454882 411 ntTSL 2 BASIC19.48■□□□□ 0.71
FOXN3O00409 LINC01385-201ENST00000512310 780 ntTSL 4 BASIC19.48■□□□□ 0.71
FOXN3O00409 AL441883.1-201ENST00000566170 1045 ntBASIC19.48■□□□□ 0.71
FOXN3O00409 USF2-205ENST00000594064 1179 ntTSL 2 BASIC19.48■□□□□ 0.71
FOXN3O00409 CALM3-208ENST00000596362 1203 ntAPPRIS P1 TSL 2 BASIC19.48■□□□□ 0.71
FOXN3O00409 APMAP-201ENST00000217456 2430 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
FOXN3O00409 HLA-DQB1-201ENST00000374943 1656 ntBASIC19.48■□□□□ 0.71
FOXN3O00409 AC132938.6-201ENST00000623828 1655 ntBASIC19.48■□□□□ 0.71
FOXN3O00409 HS3ST2-201ENST00000261374 2314 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
FOXN3O00409 NRSN2-202ENST00000382291 2088 ntAPPRIS P1 TSL 2 BASIC19.48■□□□□ 0.71
FOXN3O00409 C1orf159-205ENST00000421241 1841 ntAPPRIS P3 TSL 2 BASIC19.48■□□□□ 0.71
FOXN3O00409 RNPS1-205ENST00000561718 1806 ntTSL 3 BASIC19.48■□□□□ 0.71
FOXN3O00409 MARVELD3-202ENST00000299952 2214 ntAPPRIS ALT2 TSL 2 BASIC19.48■□□□□ 0.71
FOXN3O00409 MCTP1-218ENST00000515393 5396 ntAPPRIS P3 TSL 1 (best) BASIC19.48■□□□□ 0.71
FOXN3O00409 DLK2-203ENST00000372488 1590 ntAPPRIS P3 TSL 1 (best) BASIC19.48■□□□□ 0.71
FOXN3O00409 NOMO2-201ENST00000330537 4352 ntAPPRIS ALT2 TSL 5 BASIC19.48■□□□□ 0.71
FOXN3O00409 RAD23A-201ENST00000316856 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC19.48■□□□□ 0.71
FOXN3O00409 MFGE8-202ENST00000268151 1752 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
FOXN3O00409 CTSB-202ENST00000353047 3875 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
FOXN3O00409 ZNF667-AS1-201ENST00000585445 1521 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
FOXN3O00409 STIM2-202ENST00000465503 3613 ntAPPRIS ALT2 TSL 1 (best) BASIC19.47■□□□□ 0.71
FOXN3O00409 CYB561D2-201ENST00000232508 1225 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
FOXN3O00409 FAM19A3-201ENST00000361886 1056 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
FOXN3O00409 KRTAP5-10-201ENST00000398531 1176 ntAPPRIS P1 BASIC19.47■□□□□ 0.71
FOXN3O00409 AC113347.1-201ENST00000413321 391 ntBASIC19.47■□□□□ 0.71
FOXN3O00409 LINC01381-201ENST00000431650 466 ntTSL 3 BASIC19.47■□□□□ 0.71
FOXN3O00409 ATP5G1P1-201ENST00000448724 379 ntBASIC19.47■□□□□ 0.71
FOXN3O00409 FIS1-207ENST00000474120 915 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
FOXN3O00409 COX11P1-201ENST00000489116 835 ntBASIC19.47■□□□□ 0.71
FOXN3O00409 NDUFS3-213ENST00000534716 1263 ntTSL 2 BASIC19.47■□□□□ 0.71
FOXN3O00409 AC021739.3-201ENST00000557908 855 ntTSL 2 BASIC19.47■□□□□ 0.71
FOXN3O00409 AC011558.1-201ENST00000623459 338 ntBASIC19.47■□□□□ 0.71
FOXN3O00409 C16orf45-201ENST00000300006 2404 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
FOXN3O00409 GNE-201ENST00000377902 2565 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
FOXN3O00409 RIC8A-208ENST00000527696 2565 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
FOXN3O00409 RAB4B-EGLN2-201ENST00000594136 2554 ntAPPRIS P1 TSL 2 BASIC19.47■□□□□ 0.71
FOXN3O00409 SCARB1-203ENST00000415380 2731 ntTSL 2 BASIC19.47■□□□□ 0.71
FOXN3O00409 AC068446.2-201ENST00000500487 2165 ntTSL 2 BASIC19.47■□□□□ 0.71
FOXN3O00409 CISD2-201ENST00000273986 2327 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
FOXN3O00409 QPRT-202ENST00000395384 2343 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
FOXN3O00409 NR2C2-206ENST00000425241 2494 ntAPPRIS P1 TSL 2 BASIC19.47■□□□□ 0.71
FOXN3O00409 NETO1-201ENST00000327305 3058 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
FOXN3O00409 KDM1A-202ENST00000400181 3059 ntAPPRIS ALT2 TSL 1 (best) BASIC19.47■□□□□ 0.71
FOXN3O00409 BIRC7-202ENST00000342412 1302 ntAPPRIS ALT2 TSL 1 (best) BASIC19.47■□□□□ 0.71
FOXN3O00409 EIF5A-204ENST00000416016 1336 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
FOXN3O00409 LGALS8-AS1-201ENST00000487567 1457 ntBASIC19.47■□□□□ 0.71
FOXN3O00409 PITPNM2-209ENST00000546049 1793 ntTSL 5 BASIC19.47■□□□□ 0.71
FOXN3O00409 EIF4ENIF1-202ENST00000344710 3115 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
FOXN3O00409 SPOPL-201ENST00000280098 6025 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
FOXN3O00409 PIGZ-202ENST00000412723 2701 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
FOXN3O00409 FARP2-202ENST00000373287 2580 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
FOXN3O00409 ZNF500-202ENST00000545009 2440 ntTSL 2 BASIC19.46■□□□□ 0.71
FOXN3O00409 NFATC1-206ENST00000542384 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC19.46■□□□□ 0.71
FOXN3O00409 TAF15-211ENST00000604841 2140 ntAPPRIS ALT2 TSL 1 (best) BASIC19.46■□□□□ 0.71
FOXN3O00409 MVK-201ENST00000228510 1956 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
FOXN3O00409 UBE2I-207ENST00000406620 1842 ntAPPRIS P1 TSL 2 BASIC19.46■□□□□ 0.71
FOXN3O00409 CACNA1A-218ENST00000635895 8657 ntAPPRIS ALT2 TSL 5 BASIC19.46■□□□□ 0.71
FOXN3O00409 CACNA1A-257ENST00000638009 8665 ntAPPRIS ALT2 TSL 1 (best) BASIC19.46■□□□□ 0.71
FOXN3O00409 HOXA13-201ENST00000222753 5030 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
FOXN3O00409 EIF3C-211ENST00000566866 2986 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
FOXN3O00409 SRP9-203ENST00000366839 1596 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
FOXN3O00409 ZDHHC4-205ENST00000396713 1552 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
FOXN3O00409 TTLL8-201ENST00000266182 2505 ntAPPRIS ALT2 TSL 5 BASIC19.46■□□□□ 0.71
FOXN3O00409 NGLY1-207ENST00000428257 2534 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
FOXN3O00409 SIM2-201ENST00000290399 4442 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
FOXN3O00409 CD7-201ENST00000312648 1281 ntAPPRIS P2 TSL 1 (best) BASIC19.46■□□□□ 0.71
FOXN3O00409 HPF1-201ENST00000393381 1230 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
FOXN3O00409 AL137013.1-201ENST00000432946 1228 ntBASIC19.46■□□□□ 0.71
FOXN3O00409 STXBP1-203ENST00000476182 566 ntTSL 5 BASIC19.46■□□□□ 0.71
FOXN3O00409 TMUB1-205ENST00000482202 899 ntAPPRIS P1 TSL 3 BASIC19.46■□□□□ 0.71
FOXN3O00409 AC019068.1-202ENST00000483218 768 ntTSL 3 BASIC19.46■□□□□ 0.71
FOXN3O00409 SCPEP1-216ENST00000631024 444 ntTSL 5 BASIC19.46■□□□□ 0.71
FOXN3O00409 CLIP2-202ENST00000361545 5445 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
FOXN3O00409 MB21D2-201ENST00000392452 3368 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
FOXN3O00409 NARF-204ENST00000390006 1766 ntTSL 2 BASIC19.46■□□□□ 0.71
FOXN3O00409 CMIP-209ENST00000566513 2288 ntTSL 5 BASIC19.46■□□□□ 0.71
FOXN3O00409 PRMT2-203ENST00000355680 2688 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
FOXN3O00409 ATP1B1-201ENST00000367815 1883 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Retrieved 100 of 98,524 protein–RNA pairs in 30.4 ms