Protein–RNA interactions for Protein: A6NMK7

CPSF4L, Putative cleavage and polyadenylation specificity factor subunit 4-like protein, humanhuman

Known RBP Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4LA6NMK7 FO681492.1-201ENST00000623662 5321 ntAPPRIS P5 TSL 2 BASIC16.82■□□□□ 0.28
CPSF4LA6NMK7 ANXA6-201ENST00000354546 2593 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
CPSF4LA6NMK7 SYNGR1-201ENST00000216155 497 ntTSL 3 BASIC16.82■□□□□ 0.28
CPSF4LA6NMK7 BAALC-201ENST00000297574 801 ntTSL 3 BASIC16.82■□□□□ 0.28
CPSF4LA6NMK7 CDHR4-201ENST00000343366 1188 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
CPSF4LA6NMK7 USF2-203ENST00000379134 648 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
CPSF4LA6NMK7 MIR149-201ENST00000384879 89 ntBASIC16.82■□□□□ 0.28
CPSF4LA6NMK7 AC012618.3-203ENST00000426044 917 ntTSL 2 BASIC16.82■□□□□ 0.28
CPSF4LA6NMK7 AL390955.1-201ENST00000428694 934 ntBASIC16.82■□□□□ 0.28
CPSF4LA6NMK7 OOEP-AS1-201ENST00000445350 463 ntTSL 3 BASIC16.82■□□□□ 0.28
CPSF4LA6NMK7 CHEK2P2-202ENST00000555186 864 ntTSL 2 BASIC16.82■□□□□ 0.28
CPSF4LA6NMK7 AC005786.3-201ENST00000589360 565 ntTSL 3 BASIC16.82■□□□□ 0.28
CPSF4LA6NMK7 AP000525.1-201ENST00000608286 694 ntBASIC16.82■□□□□ 0.28
CPSF4LA6NMK7 AL590094.1-202ENST00000634619 1131 ntTSL 5 BASIC16.82■□□□□ 0.28
CPSF4LA6NMK7 FAM69B-201ENST00000371691 2410 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
CPSF4LA6NMK7 ZNF454-202ENST00000519564 2142 ntAPPRIS P1 TSL 2 BASIC16.82■□□□□ 0.28
CPSF4LA6NMK7 SIDT2-217ENST00000532062 2143 ntTSL 2 BASIC16.82■□□□□ 0.28
CPSF4LA6NMK7 PCDHA13-201ENST00000289272 5260 ntAPPRIS P2 TSL 1 (best) BASIC16.82■□□□□ 0.28
CPSF4LA6NMK7 PPP1R9B-202ENST00000612501 4167 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
CPSF4LA6NMK7 SDHA-204ENST00000504309 2067 ntTSL 5 BASIC16.82■□□□□ 0.28
CPSF4LA6NMK7 FCMR-201ENST00000367091 1950 ntAPPRIS P3 TSL 1 (best) BASIC16.82■□□□□ 0.28
CPSF4LA6NMK7 SLC2A8-202ENST00000373360 1937 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
CPSF4LA6NMK7 CKMT1A-202ENST00000413453 1911 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
CPSF4LA6NMK7 PSRC1-205ENST00000409138 1826 ntTSL 2 BASIC16.82■□□□□ 0.28
CPSF4LA6NMK7 CD19-206ENST00000567541 1707 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
CPSF4LA6NMK7 SLC43A1-201ENST00000278426 2598 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
CPSF4LA6NMK7 MALT1-202ENST00000348428 9368 ntAPPRIS P4 TSL 1 (best) BASIC16.82■□□□□ 0.28
CPSF4LA6NMK7 UBAP1-203ENST00000379186 2524 ntTSL 5 BASIC16.81■□□□□ 0.28
CPSF4LA6NMK7 TMSB4Y-201ENST00000284856 1669 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
CPSF4LA6NMK7 FAM182B-201ENST00000376403 1681 ntAPPRIS P5 TSL 1 (best) BASIC16.81■□□□□ 0.28
CPSF4LA6NMK7 CIAO1-203ENST00000488633 1533 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
CPSF4LA6NMK7 ITGA4-202ENST00000339307 1403 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
CPSF4LA6NMK7 SYT8-202ENST00000381968 1424 ntAPPRIS P2 TSL 5 BASIC16.81■□□□□ 0.28
CPSF4LA6NMK7 RABEP2-202ENST00000358201 2821 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
CPSF4LA6NMK7 PTPRU-202ENST00000373779 5579 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
CPSF4LA6NMK7 AC120049.1-201ENST00000592638 2065 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
CPSF4LA6NMK7 PIGZ-202ENST00000412723 2701 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
CPSF4LA6NMK7 CDCP1-201ENST00000296129 6006 ntAPPRIS P3 TSL 1 (best) BASIC16.81■□□□□ 0.28
CPSF4LA6NMK7 SLC1A4-201ENST00000234256 4561 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
CPSF4LA6NMK7 SYCE1L-201ENST00000378644 858 ntAPPRIS P2 TSL 5 BASIC16.81■□□□□ 0.28
CPSF4LA6NMK7 MIR718-201ENST00000390190 70 ntBASIC16.81■□□□□ 0.28
CPSF4LA6NMK7 AC007040.1-201ENST00000416229 477 ntTSL 3 BASIC16.81■□□□□ 0.28
CPSF4LA6NMK7 SLC25A1P2-201ENST00000430693 912 ntBASIC16.81■□□□□ 0.28
CPSF4LA6NMK7 SGO1-AS1-202ENST00000448208 819 ntTSL 3 BASIC16.81■□□□□ 0.28
CPSF4LA6NMK7 AC008550.1-201ENST00000511500 884 ntBASIC16.81■□□□□ 0.28
CPSF4LA6NMK7 MLF2-210ENST00000542154 838 ntAPPRIS P1 TSL 5 BASIC16.81■□□□□ 0.28
CPSF4LA6NMK7 AL353719.1-201ENST00000566847 864 ntBASIC16.81■□□□□ 0.28
CPSF4LA6NMK7 AC097641.1-201ENST00000580671 588 ntTSL 4 BASIC16.81■□□□□ 0.28
CPSF4LA6NMK7 PRKACA-209ENST00000590853 1101 ntTSL 5 BASIC16.81■□□□□ 0.28
CPSF4LA6NMK7 AL023803.3-201ENST00000615559 522 ntBASIC16.81■□□□□ 0.28
CPSF4LA6NMK7 CR769767.2-201ENST00000622735 460 ntBASIC16.81■□□□□ 0.28
CPSF4LA6NMK7 LPAR2-201ENST00000407877 1791 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
CPSF4LA6NMK7 ARMC10-209ENST00000454559 2347 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
CPSF4LA6NMK7 APP-202ENST00000348990 3355 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
CPSF4LA6NMK7 GAL3ST4-204ENST00000423751 1695 ntTSL 3 BASIC16.81■□□□□ 0.28
CPSF4LA6NMK7 ENOPH1-202ENST00000505846 1689 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
CPSF4LA6NMK7 HDAC10-201ENST00000216271 2687 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
CPSF4LA6NMK7 PIF1-201ENST00000268043 2687 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
CPSF4LA6NMK7 FSCN2-201ENST00000334850 1551 ntTSL 5 BASIC16.81■□□□□ 0.28
CPSF4LA6NMK7 FRS3-201ENST00000259748 2094 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
CPSF4LA6NMK7 PLCB2-201ENST00000260402 4616 ntAPPRIS P3 TSL 2 BASIC16.81■□□□□ 0.28
CPSF4LA6NMK7 CASZ1-202ENST00000377022 7936 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
CPSF4LA6NMK7 ACTG1-201ENST00000331925 1994 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
CPSF4LA6NMK7 C9orf66-201ENST00000382387 2918 ntAPPRIS P1 BASIC16.8■□□□□ 0.28
CPSF4LA6NMK7 RHOB-201ENST00000272233 2372 ntAPPRIS P1 BASIC16.8■□□□□ 0.28
CPSF4LA6NMK7 TMEM110-MUSTN1-202ENST00000504329 1405 ntAPPRIS P1 TSL 5 BASIC16.8■□□□□ 0.28
CPSF4LA6NMK7 GPD2-201ENST00000310454 6041 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
CPSF4LA6NMK7 CAMK2D-201ENST00000296402 5820 ntAPPRIS P3 TSL 5 BASIC16.8■□□□□ 0.28
CPSF4LA6NMK7 CSAD-209ENST00000453446 1774 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
CPSF4LA6NMK7 PSRC1-201ENST00000369903 1710 ntAPPRIS P3 TSL 5 BASIC16.8■□□□□ 0.28
CPSF4LA6NMK7 PSRC1-206ENST00000409267 1730 ntAPPRIS P3 TSL 5 BASIC16.8■□□□□ 0.28
CPSF4LA6NMK7 ZNF211-203ENST00000299871 2577 ntAPPRIS ALT2 TSL 3 BASIC16.8■□□□□ 0.28
CPSF4LA6NMK7 KRT17P2-202ENST00000326333 1174 ntTSL 2 BASIC16.8■□□□□ 0.28
CPSF4LA6NMK7 AL050404.1-201ENST00000424566 802 ntTSL 2 BASIC16.8■□□□□ 0.28
CPSF4LA6NMK7 TSPY17P-201ENST00000450329 467 ntBASIC16.8■□□□□ 0.28
CPSF4LA6NMK7 MIR4785-201ENST00000585005 73 ntBASIC16.8■□□□□ 0.28
CPSF4LA6NMK7 TNNT1-208ENST00000587465 1065 ntAPPRIS ALT2 TSL 5 BASIC16.8■□□□□ 0.28
CPSF4LA6NMK7 AL513523.10-201ENST00000623024 1186 ntAPPRIS P1 TSL 5 BASIC16.8■□□□□ 0.28
CPSF4LA6NMK7 ADK-202ENST00000372734 2083 ntAPPRIS ALT1 TSL 1 (best) BASIC16.8■□□□□ 0.28
CPSF4LA6NMK7 MFSD11-220ENST00000621483 2850 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
CPSF4LA6NMK7 VEGFA-206ENST00000372077 2834 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
CPSF4LA6NMK7 BACE1-201ENST00000313005 6326 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
CPSF4LA6NMK7 EDNRA-206ENST00000511804 1569 ntTSL 2 BASIC16.8■□□□□ 0.28
CPSF4LA6NMK7 SORT1-201ENST00000256637 7028 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
CPSF4LA6NMK7 HS3ST2-201ENST00000261374 2314 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
CPSF4LA6NMK7 MMP9-201ENST00000372330 2336 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
CPSF4LA6NMK7 CLIC6-201ENST00000349499 3806 ntAPPRIS P3 TSL 1 (best) BASIC16.8■□□□□ 0.28
CPSF4LA6NMK7 DVL2-209ENST00000575458 2659 ntAPPRIS ALT2 TSL 2 BASIC16.8■□□□□ 0.28
CPSF4LA6NMK7 CD14-201ENST00000302014 1886 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
CPSF4LA6NMK7 THEG-201ENST00000342640 1877 ntAPPRIS P4 TSL 1 (best) BASIC16.8■□□□□ 0.28
CPSF4LA6NMK7 CYP4F8-210ENST00000612078 1889 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
CPSF4LA6NMK7 BMPER-201ENST00000297161 5031 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
CPSF4LA6NMK7 HOXB1-202ENST00000577092 1414 ntBASIC16.79■□□□□ 0.28
CPSF4LA6NMK7 PLA2G12A-201ENST00000243501 5226 ntAPPRIS P2 TSL 1 (best) BASIC16.79■□□□□ 0.28
CPSF4LA6NMK7 DHRS4L2-201ENST00000335125 1370 ntAPPRIS P2 TSL 1 (best) BASIC16.79■□□□□ 0.28
CPSF4LA6NMK7 SH3GLB2-202ENST00000372559 1365 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
CPSF4LA6NMK7 TMEM198-201ENST00000344458 2393 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
CPSF4LA6NMK7 ZNF354C-201ENST00000315475 5411 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
CPSF4LA6NMK7 PTP4A1-201ENST00000370651 5088 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
CPSF4LA6NMK7 CALM2-201ENST00000272298 1302 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 32.4 ms