Protein–RNA interactions for Protein: Q9Y5P4

COL4A3BP, Collagen type IV alpha-3-binding protein, humanhuman

Predictions only

Length 624 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A3BPQ9Y5P4 QSOX2-201ENST00000358701 4530 ntAPPRIS P1 TSL 2 BASIC20.38■□□□□ 0.85
COL4A3BPQ9Y5P4 FKBP3-201ENST00000216330 1684 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
COL4A3BPQ9Y5P4 PCDHB2-202ENST00000622947 2231 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
COL4A3BPQ9Y5P4 ZNF668-202ENST00000394983 2717 ntAPPRIS P1 TSL 5 BASIC20.38■□□□□ 0.85
COL4A3BPQ9Y5P4 FGFR3-202ENST00000340107 4293 ntAPPRIS ALT2 TSL 5 BASIC20.38■□□□□ 0.85
COL4A3BPQ9Y5P4 NR5A1-202ENST00000373588 3104 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
COL4A3BPQ9Y5P4 NMRK1-203ENST00000376811 2050 ntTSL 2 BASIC20.38■□□□□ 0.85
COL4A3BPQ9Y5P4 DOK7-201ENST00000340083 2562 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
COL4A3BPQ9Y5P4 DOK7-203ENST00000507039 2551 ntTSL 2 BASIC20.38■□□□□ 0.85
COL4A3BPQ9Y5P4 APBB1IP-201ENST00000356785 1513 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
COL4A3BPQ9Y5P4 EMX1-202ENST00000394111 1528 ntTSL 3 BASIC20.37■□□□□ 0.85
COL4A3BPQ9Y5P4 SPART-209ENST00000494062 3018 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
COL4A3BPQ9Y5P4 UNKL-202ENST00000301712 1431 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
COL4A3BPQ9Y5P4 SERPINF2-202ENST00000382061 2265 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
COL4A3BPQ9Y5P4 PJA1-202ENST00000374571 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC20.37■□□□□ 0.85
COL4A3BPQ9Y5P4 CD1E-205ENST00000368160 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC20.37■□□□□ 0.85
COL4A3BPQ9Y5P4 LRP3-201ENST00000253193 3807 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
COL4A3BPQ9Y5P4 TMEM243-203ENST00000433078 1273 ntAPPRIS P1 TSL 2 BASIC20.37■□□□□ 0.85
COL4A3BPQ9Y5P4 DMKN-212ENST00000443640 842 ntAPPRIS ALT2 TSL 5 BASIC20.37■□□□□ 0.85
COL4A3BPQ9Y5P4 AK2-204ENST00000467905 880 ntAPPRIS ALT1 TSL 2 BASIC20.37■□□□□ 0.85
COL4A3BPQ9Y5P4 CSRP1-214ENST00000531916 890 ntTSL 5 BASIC20.37■□□□□ 0.85
COL4A3BPQ9Y5P4 CBFB-203ENST00000561924 584 ntTSL 5 BASIC20.37■□□□□ 0.85
COL4A3BPQ9Y5P4 LINC01785-201ENST00000598042 1112 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
COL4A3BPQ9Y5P4 SYNGR4-204ENST00000601610 859 ntTSL 3 BASIC20.37■□□□□ 0.85
COL4A3BPQ9Y5P4 WDR6-223ENST00000627177 207 ntTSL 2 BASIC20.37■□□□□ 0.85
COL4A3BPQ9Y5P4 RBM7-201ENST00000375490 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC20.37■□□□□ 0.85
COL4A3BPQ9Y5P4 NUDT10-202ENST00000376006 2001 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
COL4A3BPQ9Y5P4 KCNN4-209ENST00000615047 2029 ntTSL 5 BASIC20.37■□□□□ 0.85
COL4A3BPQ9Y5P4 MYC-207ENST00000621592 2366 ntAPPRIS ALT1 TSL 1 (best) BASIC20.37■□□□□ 0.85
COL4A3BPQ9Y5P4 PIP4K2C-202ENST00000422156 1558 ntTSL 2 BASIC20.37■□□□□ 0.85
COL4A3BPQ9Y5P4 SPNS1-204ENST00000352260 1948 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
COL4A3BPQ9Y5P4 SSUH2-202ENST00000341795 1799 ntAPPRIS P3 TSL 1 (best) BASIC20.36■□□□□ 0.85
COL4A3BPQ9Y5P4 CBS-203ENST00000398158 2453 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
COL4A3BPQ9Y5P4 CBSL-206ENST00000624406 2453 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
COL4A3BPQ9Y5P4 HAPLN4-201ENST00000291481 3449 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
COL4A3BPQ9Y5P4 HEXB-207ENST00000511181 2021 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
COL4A3BPQ9Y5P4 USP25-204ENST00000400183 5341 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
COL4A3BPQ9Y5P4 RAP1GAP-204ENST00000374761 3318 ntTSL 5 BASIC20.36■□□□□ 0.85
COL4A3BPQ9Y5P4 PSMG4-209ENST00000473000 4603 ntTSL 2 BASIC20.36■□□□□ 0.85
COL4A3BPQ9Y5P4 CLIP2-201ENST00000223398 5563 ntAPPRIS P1 TSL 5 BASIC20.36■□□□□ 0.85
COL4A3BPQ9Y5P4 ZC3H12D-201ENST00000409806 5791 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
COL4A3BPQ9Y5P4 ABALON-201ENST00000629058 1903 ntBASIC20.36■□□□□ 0.85
COL4A3BPQ9Y5P4 AC106791.1-202ENST00000508281 1148 ntTSL 2 BASIC20.36■□□□□ 0.85
COL4A3BPQ9Y5P4 AC011498.5-201ENST00000592027 486 ntBASIC20.36■□□□□ 0.85
COL4A3BPQ9Y5P4 NTF4-201ENST00000593537 932 ntAPPRIS P1 BASIC20.36■□□□□ 0.85
COL4A3BPQ9Y5P4 SPACA6-213ENST00000637797 1073 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
COL4A3BPQ9Y5P4 SEMA3B-209ENST00000456560 2221 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
COL4A3BPQ9Y5P4 DDX42-216ENST00000583590 4148 ntAPPRIS P1 TSL 5 BASIC20.36■□□□□ 0.85
COL4A3BPQ9Y5P4 SDF4-201ENST00000263741 2079 ntAPPRIS P3 TSL 1 (best) BASIC20.36■□□□□ 0.85
COL4A3BPQ9Y5P4 VEGFA-206ENST00000372077 2834 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
COL4A3BPQ9Y5P4 CHRNA4-207ENST00000615287 5643 ntTSL 5 BASIC20.35■□□□□ 0.85
COL4A3BPQ9Y5P4 ARFRP1-207ENST00000612157 1698 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
COL4A3BPQ9Y5P4 KIAA1324L-208ENST00000450689 6841 ntAPPRIS ALT2 TSL 5 BASIC20.35■□□□□ 0.85
COL4A3BPQ9Y5P4 ARNTL-203ENST00000403290 2746 ntAPPRIS ALT1 TSL 1 (best) BASIC20.35■□□□□ 0.85
COL4A3BPQ9Y5P4 ZNF419-207ENST00000442920 1857 ntAPPRIS ALT2 TSL 2 BASIC20.35■□□□□ 0.85
COL4A3BPQ9Y5P4 RIN1-205ENST00000530056 2122 ntTSL 2 BASIC20.35■□□□□ 0.85
COL4A3BPQ9Y5P4 RPLP0-219ENST00000551150 1344 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
COL4A3BPQ9Y5P4 HYAL1-204ENST00000395144 2081 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
COL4A3BPQ9Y5P4 WIPF1-206ENST00000409891 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC20.35■□□□□ 0.85
COL4A3BPQ9Y5P4 NFATC1-201ENST00000253506 4642 ntAPPRIS P3 TSL 1 (best) BASIC20.35■□□□□ 0.85
COL4A3BPQ9Y5P4 VCX3B-203ENST00000444481 812 ntAPPRIS ALT2 TSL 5 BASIC20.35■□□□□ 0.85
COL4A3BPQ9Y5P4 AC051649.1-201ENST00000509204 330 ntTSL 3 BASIC20.35■□□□□ 0.85
COL4A3BPQ9Y5P4 NAA38-203ENST00000575071 553 ntTSL 2 BASIC20.35■□□□□ 0.85
COL4A3BPQ9Y5P4 VCX3A-203ENST00000612369 812 ntAPPRIS ALT2 TSL 5 BASIC20.35■□□□□ 0.85
COL4A3BPQ9Y5P4 CD24-206ENST00000620405 586 ntAPPRIS ALT2 TSL 2 BASIC20.35■□□□□ 0.85
COL4A3BPQ9Y5P4 LITAF-220ENST00000620789 692 ntTSL 5 BASIC20.35■□□□□ 0.85
COL4A3BPQ9Y5P4 CLN3-259ENST00000637551 1083 ntTSL 5 BASIC20.35■□□□□ 0.85
COL4A3BPQ9Y5P4 LUC7L-221ENST00000629543 1520 ntTSL 5 BASIC20.35■□□□□ 0.85
COL4A3BPQ9Y5P4 GSEC-201ENST00000626810 2289 ntTSL 2 BASIC20.35■□□□□ 0.85
COL4A3BPQ9Y5P4 AC099343.3-201ENST00000605834 2503 ntBASIC20.35■□□□□ 0.85
COL4A3BPQ9Y5P4 EHMT1-204ENST00000462484 2707 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
COL4A3BPQ9Y5P4 PLK1-201ENST00000300093 2227 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
COL4A3BPQ9Y5P4 CASD1-201ENST00000297273 3942 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
COL4A3BPQ9Y5P4 C19orf48-202ENST00000391812 1666 ntAPPRIS P1 TSL 2 BASIC20.35■□□□□ 0.85
COL4A3BPQ9Y5P4 EGFL6-201ENST00000361306 2398 ntAPPRIS P3 TSL 1 (best) BASIC20.35■□□□□ 0.85
COL4A3BPQ9Y5P4 ITPK1-202ENST00000354313 2803 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
COL4A3BPQ9Y5P4 AGPAT2-201ENST00000371694 1391 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
COL4A3BPQ9Y5P4 SAMD5-201ENST00000367474 6089 ntAPPRIS P1 TSL 2 BASIC20.34■□□□□ 0.85
COL4A3BPQ9Y5P4 GMCL1P1-201ENST00000463439 1581 ntBASIC20.34■□□□□ 0.85
COL4A3BPQ9Y5P4 MAPT-209ENST00000446361 5345 ntAPPRIS ALT2 TSL 1 (best) BASIC20.34■□□□□ 0.85
COL4A3BPQ9Y5P4 STARD7-AS1-202ENST00000446816 1527 ntTSL 2 BASIC20.34■□□□□ 0.85
COL4A3BPQ9Y5P4 PPP1R7-201ENST00000234038 2386 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
COL4A3BPQ9Y5P4 NIFK-201ENST00000285814 1734 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
COL4A3BPQ9Y5P4 AC087500.1-202ENST00000571689 1715 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
COL4A3BPQ9Y5P4 TMC5-203ENST00000396229 4917 ntAPPRIS ALT2 TSL 5 BASIC20.34■□□□□ 0.85
COL4A3BPQ9Y5P4 POU4F3-201ENST00000230732 1182 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
COL4A3BPQ9Y5P4 ZNF575-201ENST00000314228 1298 ntAPPRIS P1 TSL 2 BASIC20.34■□□□□ 0.85
COL4A3BPQ9Y5P4 TTC22-201ENST00000371274 2149 ntTSL 2 BASIC20.34■□□□□ 0.85
COL4A3BPQ9Y5P4 TBC1D7-205ENST00000379307 1084 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
COL4A3BPQ9Y5P4 PLAC8-202ENST00000411416 786 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
COL4A3BPQ9Y5P4 ACY1-210ENST00000494103 1298 ntTSL 3 BASIC20.34■□□□□ 0.85
COL4A3BPQ9Y5P4 AC106771.1-201ENST00000502209 372 ntTSL 2 BASIC20.34■□□□□ 0.85
COL4A3BPQ9Y5P4 PLXND1-205ENST00000504689 546 ntTSL 3 BASIC20.34■□□□□ 0.85
COL4A3BPQ9Y5P4 LY6E-209ENST00000521003 740 ntAPPRIS P2 TSL 2 BASIC20.34■□□□□ 0.85
COL4A3BPQ9Y5P4 AC004080.2-201ENST00000523331 556 ntTSL 4 BASIC20.34■□□□□ 0.85
COL4A3BPQ9Y5P4 REEP1-209ENST00000541910 969 ntTSL 2 BASIC20.34■□□□□ 0.85
COL4A3BPQ9Y5P4 ACD-215ENST00000620761 1483 ntAPPRIS ALT2 TSL 1 (best) BASIC20.34■□□□□ 0.85
COL4A3BPQ9Y5P4 FAM110D-201ENST00000374268 2858 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
COL4A3BPQ9Y5P4 WDR45-205ENST00000376358 1432 ntTSL 2 BASIC20.34■□□□□ 0.85
COL4A3BPQ9Y5P4 ASCL5-202ENST00000458416 1420 ntAPPRIS P1 BASIC20.34■□□□□ 0.85
Retrieved 100 of 98,524 protein–RNA pairs in 65.8 ms