Protein–RNA interactions for Protein: Q9Y5E6

PCDHB3, Protocadherin beta-3, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHB3Q9Y5E6 FOXD4L1-201ENST00000306507 2491 ntAPPRIS P1 BASIC17.86■□□□□ 0.45
PCDHB3Q9Y5E6 MAN1A1-201ENST00000368468 5014 ntAPPRIS P1 TSL 2 BASIC17.86■□□□□ 0.45
PCDHB3Q9Y5E6 CHTOP-202ENST00000368687 1094 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
PCDHB3Q9Y5E6 HCG4P8-203ENST00000443049 980 ntBASIC17.86■□□□□ 0.45
PCDHB3Q9Y5E6 AC112907.2-201ENST00000448639 330 ntBASIC17.86■□□□□ 0.45
PCDHB3Q9Y5E6 GRP-204ENST00000529320 824 ntAPPRIS ALT2 TSL 1 (best) BASIC17.86■□□□□ 0.45
PCDHB3Q9Y5E6 AL136038.3-201ENST00000561909 1096 ntBASIC17.86■□□□□ 0.45
PCDHB3Q9Y5E6 ATP5D-207ENST00000591660 637 ntAPPRIS P1 TSL 3 BASIC17.86■□□□□ 0.45
PCDHB3Q9Y5E6 SLF2-205ENST00000609386 891 ntAPPRIS ALT2 BASIC17.86■□□□□ 0.45
PCDHB3Q9Y5E6 AC116407.4-201ENST00000623319 1061 ntBASIC17.86■□□□□ 0.45
PCDHB3Q9Y5E6 LINC02536-201ENST00000625799 625 ntTSL 3 BASIC17.86■□□□□ 0.45
PCDHB3Q9Y5E6 CTSB-202ENST00000353047 3875 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
PCDHB3Q9Y5E6 POLI-207ENST00000579434 2705 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
PCDHB3Q9Y5E6 RAB29-205ENST00000446390 1441 ntTSL 2 BASIC17.86■□□□□ 0.45
PCDHB3Q9Y5E6 MRPL3-202ENST00000425847 1457 ntTSL 2 BASIC17.86■□□□□ 0.45
PCDHB3Q9Y5E6 PDLIM3-202ENST00000284770 1766 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
PCDHB3Q9Y5E6 PFN2-203ENST00000452853 1780 ntAPPRIS ALT1 TSL 1 (best) BASIC17.86■□□□□ 0.45
PCDHB3Q9Y5E6 SPERT-202ENST00000378966 1842 ntAPPRIS ALT2 TSL 1 (best) BASIC17.86■□□□□ 0.45
PCDHB3Q9Y5E6 MAGED2-213ENST00000627068 1811 ntAPPRIS ALT2 TSL 5 BASIC17.86■□□□□ 0.45
PCDHB3Q9Y5E6 MAPRE3-201ENST00000233121 1892 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
PCDHB3Q9Y5E6 CPZ-201ENST00000315782 2136 ntAPPRIS P3 TSL 1 (best) BASIC17.86■□□□□ 0.45
PCDHB3Q9Y5E6 CAMKK2-207ENST00000404169 2116 ntAPPRIS P4 TSL 1 (best) BASIC17.86■□□□□ 0.45
PCDHB3Q9Y5E6 ARPIN-202ENST00000460685 2145 ntTSL 2 BASIC17.86■□□□□ 0.45
PCDHB3Q9Y5E6 MINPP1-201ENST00000371994 2183 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
PCDHB3Q9Y5E6 TRPV4-208ENST00000544971 2295 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
PCDHB3Q9Y5E6 BORCS6-201ENST00000389017 2575 ntAPPRIS P1 BASIC17.86■□□□□ 0.45
PCDHB3Q9Y5E6 SCYL1-203ENST00000420247 2583 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
PCDHB3Q9Y5E6 UBE3C-201ENST00000348165 5229 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
PCDHB3Q9Y5E6 TJP3-205ENST00000587686 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC17.85■□□□□ 0.45
PCDHB3Q9Y5E6 BRMS1L-201ENST00000216807 2657 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
PCDHB3Q9Y5E6 SLC39A5-201ENST00000266980 2031 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
PCDHB3Q9Y5E6 NUDT16L1-201ENST00000304301 1349 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
PCDHB3Q9Y5E6 MAFF-201ENST00000338483 2490 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
PCDHB3Q9Y5E6 CD164L2-202ENST00000374027 1457 ntAPPRIS P3 TSL 1 (best) BASIC17.85■□□□□ 0.45
PCDHB3Q9Y5E6 PRRT1-202ENST00000375150 1726 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
PCDHB3Q9Y5E6 C7orf50-203ENST00000397100 1264 ntAPPRIS P2 TSL 3 BASIC17.85■□□□□ 0.45
PCDHB3Q9Y5E6 JAKMIP1-202ENST00000409021 2975 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
PCDHB3Q9Y5E6 NAPRT-202ENST00000426292 1654 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
PCDHB3Q9Y5E6 AC140125.2-201ENST00000502515 1517 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
PCDHB3Q9Y5E6 C5orf30-203ENST00000515669 1573 ntAPPRIS P1 TSL 3 BASIC17.85■□□□□ 0.45
PCDHB3Q9Y5E6 PCDHA2-203ENST00000526136 5254 ntAPPRIS P2 TSL 1 (best) BASIC17.85■□□□□ 0.45
PCDHB3Q9Y5E6 TFCP2-205ENST00000549867 1727 ntTSL 5 BASIC17.85■□□□□ 0.45
PCDHB3Q9Y5E6 ANKRD34C-AS1-203ENST00000559225 528 ntTSL 4 BASIC17.85■□□□□ 0.45
PCDHB3Q9Y5E6 PPP4C-202ENST00000561610 1333 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
PCDHB3Q9Y5E6 AC138207.7-201ENST00000584499 668 ntTSL 5 BASIC17.85■□□□□ 0.45
PCDHB3Q9Y5E6 AC067852.2-201ENST00000590513 2313 ntBASIC17.85■□□□□ 0.45
PCDHB3Q9Y5E6 LINC01785-201ENST00000598042 1112 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
PCDHB3Q9Y5E6 ILKAP-212ENST00000622223 1088 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
PCDHB3Q9Y5E6 UBXN2A-201ENST00000309033 6066 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
PCDHB3Q9Y5E6 BTBD11-201ENST00000280758 5767 ntAPPRIS P3 TSL 5 BASIC17.85■□□□□ 0.45
PCDHB3Q9Y5E6 ZC3H12D-201ENST00000409806 5791 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
PCDHB3Q9Y5E6 LRCH1-201ENST00000311191 4710 ntAPPRIS ALT2 TSL 1 (best) BASIC17.85■□□□□ 0.45
PCDHB3Q9Y5E6 IQSEC1-201ENST00000273221 5279 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
PCDHB3Q9Y5E6 TNPO2-203ENST00000450764 4993 ntAPPRIS ALT1 TSL 1 (best) BASIC17.84■□□□□ 0.45
PCDHB3Q9Y5E6 SPC24-206ENST00000592540 2315 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
PCDHB3Q9Y5E6 SNAI3-AS1-205ENST00000568633 2096 ntBASIC17.84■□□□□ 0.45
PCDHB3Q9Y5E6 ACTG1-201ENST00000331925 1994 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
PCDHB3Q9Y5E6 TCP11-209ENST00000444780 1841 ntAPPRIS ALT2 TSL 2 BASIC17.84■□□□□ 0.45
PCDHB3Q9Y5E6 PDE9A-213ENST00000398236 1776 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
PCDHB3Q9Y5E6 CD1E-205ENST00000368160 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC17.84■□□□□ 0.45
PCDHB3Q9Y5E6 ICA1-208ENST00000407906 1615 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
PCDHB3Q9Y5E6 AC036111.1-201ENST00000533973 1582 ntBASIC17.84■□□□□ 0.45
PCDHB3Q9Y5E6 ZHX3-212ENST00000558993 1528 ntTSL 5 BASIC17.84■□□□□ 0.45
PCDHB3Q9Y5E6 SYT8-202ENST00000381968 1424 ntAPPRIS P2 TSL 5 BASIC17.84■□□□□ 0.45
PCDHB3Q9Y5E6 ELP5-204ENST00000396628 1423 ntAPPRIS P2 TSL 1 (best) BASIC17.84■□□□□ 0.45
PCDHB3Q9Y5E6 DAG1-221ENST00000541308 5676 ntAPPRIS P1 TSL 5 BASIC17.84■□□□□ 0.45
PCDHB3Q9Y5E6 HSD17B10-201ENST00000168216 960 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
PCDHB3Q9Y5E6 FUOM-201ENST00000278025 709 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
PCDHB3Q9Y5E6 AL162457.2-201ENST00000447909 937 ntTSL 3 BASIC17.84■□□□□ 0.45
PCDHB3Q9Y5E6 FIS1-207ENST00000474120 915 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
PCDHB3Q9Y5E6 AC034232.1-201ENST00000506026 1064 ntBASIC17.84■□□□□ 0.45
PCDHB3Q9Y5E6 LY6E-213ENST00000522528 606 ntTSL 3 BASIC17.84■□□□□ 0.45
PCDHB3Q9Y5E6 AC011773.3-202ENST00000549291 790 ntTSL 3 BASIC17.84■□□□□ 0.45
PCDHB3Q9Y5E6 ZNF444P1-201ENST00000559497 298 ntBASIC17.84■□□□□ 0.45
PCDHB3Q9Y5E6 NDUFV2-AS1-203ENST00000608008 779 ntBASIC17.84■□□□□ 0.45
PCDHB3Q9Y5E6 ZNF534-205ENST00000617900 1085 ntTSL 2 BASIC17.84■□□□□ 0.45
PCDHB3Q9Y5E6 AL355987.1-201ENST00000435202 2420 ntAPPRIS P1 TSL 2 BASIC17.84■□□□□ 0.45
PCDHB3Q9Y5E6 B3GNT9-201ENST00000449549 2917 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
PCDHB3Q9Y5E6 GATB-213ENST00000515812 1893 ntTSL 5 BASIC17.84■□□□□ 0.45
PCDHB3Q9Y5E6 TUBGCP3-202ENST00000375669 2723 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
PCDHB3Q9Y5E6 RAP1GDS1-201ENST00000264572 1686 ntTSL 5 BASIC17.83■□□□□ 0.45
PCDHB3Q9Y5E6 ARHGEF28-204ENST00000437974 5792 ntAPPRIS P3 TSL 1 (best) BASIC17.83■□□□□ 0.45
PCDHB3Q9Y5E6 YPEL3-202ENST00000398841 1588 ntTSL 1 (best) BASIC17.83■□□□□ 0.45
PCDHB3Q9Y5E6 HLA-G-205ENST00000428701 1578 ntAPPRIS P2 BASIC17.83■□□□□ 0.45
PCDHB3Q9Y5E6 KDM4B-202ENST00000381759 3058 ntTSL 1 (best) BASIC17.83■□□□□ 0.45
PCDHB3Q9Y5E6 FBXW9-203ENST00000587955 1437 ntTSL 1 (best) BASIC17.83■□□□□ 0.45
PCDHB3Q9Y5E6 POMT2-201ENST00000261534 4876 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
PCDHB3Q9Y5E6 TRIM33-202ENST00000369543 3457 ntAPPRIS ALT2 TSL 1 (best) BASIC17.83■□□□□ 0.45
PCDHB3Q9Y5E6 AC008764.6-201ENST00000595909 2069 ntBASIC17.83■□□□□ 0.45
PCDHB3Q9Y5E6 PLEKHG5-212ENST00000537245 4794 ntAPPRIS ALT2 TSL 2 BASIC17.83■□□□□ 0.45
PCDHB3Q9Y5E6 ALDH3B1-206ENST00000615463 1300 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
PCDHB3Q9Y5E6 PSMG4-209ENST00000473000 4603 ntTSL 2 BASIC17.83■□□□□ 0.44
PCDHB3Q9Y5E6 RARRES1-201ENST00000237696 1952 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
PCDHB3Q9Y5E6 FZD10-201ENST00000229030 3281 ntAPPRIS P1 BASIC17.83■□□□□ 0.44
PCDHB3Q9Y5E6 ARPC4-201ENST00000397261 2582 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
PCDHB3Q9Y5E6 MFHAS1-201ENST00000276282 6414 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
PCDHB3Q9Y5E6 PAQR6-201ENST00000292291 1908 ntAPPRIS P3 TSL 1 (best) BASIC17.83■□□□□ 0.44
PCDHB3Q9Y5E6 FIBIN-201ENST00000318627 1938 ntAPPRIS P1 BASIC17.83■□□□□ 0.44
PCDHB3Q9Y5E6 NPEPL1-204ENST00000525967 1917 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
PCDHB3Q9Y5E6 GPR32-201ENST00000270590 1269 ntAPPRIS P1 BASIC17.83■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 26.2 ms