Protein–RNA interactions for Protein: Q9NNX9

VCX3A, Variable charge X-linked protein 3, humanhuman

Predictions only

Length 186 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCX3AQ9NNX9 MAPRE1-201ENST00000375571 2623 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
VCX3AQ9NNX9 GATA4-206ENST00000528712 2614 ntTSL 2 BASIC17.05■□□□□ 0.32
VCX3AQ9NNX9 SLC1A6-208ENST00000598504 2987 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
VCX3AQ9NNX9 FAM208A-201ENST00000355628 5239 ntAPPRIS ALT2 TSL 1 (best) BASIC17.05■□□□□ 0.32
VCX3AQ9NNX9 PDLIM2-221ENST00000622702 1490 ntTSL 5 BASIC17.05■□□□□ 0.32
VCX3AQ9NNX9 RRBP1-208ENST00000470422 2070 ntTSL 2 BASIC17.05■□□□□ 0.32
VCX3AQ9NNX9 TGFBR2-201ENST00000295754 4621 ntAPPRIS P3 TSL 1 (best) BASIC17.05■□□□□ 0.32
VCX3AQ9NNX9 WIPF1-201ENST00000272746 3028 ntAPPRIS ALT2 TSL 1 (best) BASIC17.05■□□□□ 0.32
VCX3AQ9NNX9 HNRNPLL-212ENST00000608859 3035 ntTSL 5 BASIC17.05■□□□□ 0.32
VCX3AQ9NNX9 AFAP1L2-202ENST00000369271 3964 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
VCX3AQ9NNX9 PCDHB17P-201ENST00000539533 2393 ntBASIC17.04■□□□□ 0.32
VCX3AQ9NNX9 ZNF48-206ENST00000622647 2695 ntTSL 4 BASIC17.04■□□□□ 0.32
VCX3AQ9NNX9 RASAL3-201ENST00000343625 3293 ntAPPRIS P2 TSL 2 BASIC17.04■□□□□ 0.32
VCX3AQ9NNX9 VASP-201ENST00000245932 2305 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
VCX3AQ9NNX9 STX18-205ENST00000505286 1380 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
VCX3AQ9NNX9 CRELD1-201ENST00000326434 1994 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
VCX3AQ9NNX9 TNKS-211ENST00000520408 1964 ntTSL 2 BASIC17.04■□□□□ 0.32
VCX3AQ9NNX9 TTC6-206ENST00000553443 5833 ntAPPRIS P1 TSL 5 BASIC17.04■□□□□ 0.32
VCX3AQ9NNX9 BICD2-202ENST00000375512 4636 ntAPPRIS P3 TSL 1 (best) BASIC17.04■□□□□ 0.32
VCX3AQ9NNX9 CACFD1-202ENST00000316948 2794 ntAPPRIS P3 TSL 1 (best) BASIC17.04■□□□□ 0.32
VCX3AQ9NNX9 GPAT2-201ENST00000359548 2761 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
VCX3AQ9NNX9 ZNF514-202ENST00000411425 2755 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
VCX3AQ9NNX9 KDM5C-205ENST00000404049 5677 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
VCX3AQ9NNX9 LINC00847-201ENST00000501855 1871 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
VCX3AQ9NNX9 TGIF1-207ENST00000407501 1585 ntAPPRIS P1 TSL 3 BASIC17.04■□□□□ 0.32
VCX3AQ9NNX9 TRABD2A-202ENST00000409133 1554 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
VCX3AQ9NNX9 FOXP1-218ENST00000498215 2400 ntAPPRIS P3 TSL 2 BASIC17.04■□□□□ 0.32
VCX3AQ9NNX9 LCK-202ENST00000336890 2117 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
VCX3AQ9NNX9 TRAPPC5-202ENST00000426877 765 ntAPPRIS P1 TSL 2 BASIC17.04■□□□□ 0.32
VCX3AQ9NNX9 NME1-207ENST00000480143 964 ntTSL 2 BASIC17.04■□□□□ 0.32
VCX3AQ9NNX9 LINC01956-201ENST00000557729 695 ntTSL 5 BASIC17.04■□□□□ 0.32
VCX3AQ9NNX9 NRIP1-203ENST00000400202 7671 ntAPPRIS P1 TSL 5 BASIC17.04■□□□□ 0.32
VCX3AQ9NNX9 FLJ13224-201ENST00000313737 1514 ntBASIC17.04■□□□□ 0.32
VCX3AQ9NNX9 FAM53A-205ENST00000472884 2086 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
VCX3AQ9NNX9 WDTC1-202ENST00000361771 4275 ntAPPRIS P3 TSL 1 (best) BASIC17.04■□□□□ 0.32
VCX3AQ9NNX9 SLC2A6-201ENST00000371897 2301 ntTSL 2 BASIC17.04■□□□□ 0.32
VCX3AQ9NNX9 STT3B-201ENST00000295770 4248 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
VCX3AQ9NNX9 NAT6-204ENST00000443094 1464 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
VCX3AQ9NNX9 AC087500.1-202ENST00000571689 1715 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
VCX3AQ9NNX9 AFTPH-202ENST00000238856 4040 ntAPPRIS P3 TSL 1 (best) BASIC17.04■□□□□ 0.32
VCX3AQ9NNX9 LIN54-204ENST00000505397 2742 ntAPPRIS P1 TSL 5 BASIC17.04■□□□□ 0.32
VCX3AQ9NNX9 JPH2-201ENST00000342272 1923 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
VCX3AQ9NNX9 E2F3-201ENST00000346618 4749 ntAPPRIS P3 TSL 1 (best) BASIC17.04■□□□□ 0.32
VCX3AQ9NNX9 VIPR2-201ENST00000262178 3944 ntAPPRIS P2 TSL 1 (best) BASIC17.03■□□□□ 0.32
VCX3AQ9NNX9 SLC27A2-201ENST00000267842 2394 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
VCX3AQ9NNX9 COQ6-201ENST00000334571 2118 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
VCX3AQ9NNX9 MAGI1-202ENST00000402939 4389 ntAPPRIS ALT2 TSL 1 (best) BASIC17.03■□□□□ 0.32
VCX3AQ9NNX9 AC093677.2-201ENST00000600169 1863 ntBASIC17.03■□□□□ 0.32
VCX3AQ9NNX9 MYO19-225ENST00000621344 1640 ntTSL 2 BASIC17.03■□□□□ 0.32
VCX3AQ9NNX9 DNAJA3-201ENST00000262375 2763 ntAPPRIS P3 TSL 1 (best) BASIC17.03■□□□□ 0.32
VCX3AQ9NNX9 RBM6-210ENST00000442092 2260 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
VCX3AQ9NNX9 PCDHA14-201ENST00000506751 2298 ntBASIC17.03■□□□□ 0.32
VCX3AQ9NNX9 C18orf8-208ENST00000590868 2002 ntTSL 2 BASIC17.03■□□□□ 0.32
VCX3AQ9NNX9 CTCF-201ENST00000264010 3939 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
VCX3AQ9NNX9 ALK-201ENST00000389048 6220 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
VCX3AQ9NNX9 TUBA8-201ENST00000316027 1518 ntTSL 2 BASIC17.03■□□□□ 0.32
VCX3AQ9NNX9 FBXO6-201ENST00000376753 1520 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
VCX3AQ9NNX9 APEH-202ENST00000438011 2249 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
VCX3AQ9NNX9 LINC02551-202ENST00000533812 2203 ntTSL 5 BASIC17.03■□□□□ 0.32
VCX3AQ9NNX9 FRMD6-AS1-201ENST00000617151 2229 ntBASIC17.03■□□□□ 0.32
VCX3AQ9NNX9 RPLP0-201ENST00000228306 1257 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
VCX3AQ9NNX9 DNPH1-201ENST00000230431 657 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
VCX3AQ9NNX9 DNAJC4-202ENST00000321685 1288 ntAPPRIS P3 TSL 1 (best) BASIC17.03■□□□□ 0.32
VCX3AQ9NNX9 PHLDA3-201ENST00000367309 896 ntAPPRIS P1 TSL 5 BASIC17.03■□□□□ 0.32
VCX3AQ9NNX9 PEMT-202ENST00000395781 1050 ntTSL 2 BASIC17.03■□□□□ 0.32
VCX3AQ9NNX9 LMCD1-AS1-204ENST00000446281 932 ntTSL 5 BASIC17.03■□□□□ 0.32
VCX3AQ9NNX9 MIR663AHG-233ENST00000609248 830 ntTSL 5 BASIC17.03■□□□□ 0.32
VCX3AQ9NNX9 AC092902.2-206ENST00000625484 846 ntTSL 5 BASIC17.03■□□□□ 0.32
VCX3AQ9NNX9 DNAJC4-212ENST00000628077 938 ntTSL 5 BASIC17.03■□□□□ 0.32
VCX3AQ9NNX9 PLEKHN1-201ENST00000379407 2194 ntAPPRIS ALT2 TSL 1 (best) BASIC17.03■□□□□ 0.32
VCX3AQ9NNX9 MPPE1-211ENST00000588072 4236 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
VCX3AQ9NNX9 FGFR4-207ENST00000502906 2638 ntAPPRIS P4 TSL 1 (best) BASIC17.03■□□□□ 0.32
VCX3AQ9NNX9 MAP3K3-202ENST00000361733 3529 ntAPPRIS P3 TSL 1 (best) BASIC17.03■□□□□ 0.32
VCX3AQ9NNX9 LRP10-201ENST00000359591 6886 ntAPPRIS P2 TSL 1 (best) BASIC17.03■□□□□ 0.32
VCX3AQ9NNX9 GDF5-202ENST00000374372 2572 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
VCX3AQ9NNX9 DIO1-201ENST00000322679 1658 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
VCX3AQ9NNX9 DIO1-217ENST00000617230 1656 ntTSL 5 BASIC17.03■□□□□ 0.32
VCX3AQ9NNX9 ICMT-201ENST00000343813 4771 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
VCX3AQ9NNX9 KCNS1-201ENST00000306117 4538 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
VCX3AQ9NNX9 C16orf89-201ENST00000315997 1872 ntAPPRIS P3 TSL 1 (best) BASIC17.03■□□□□ 0.32
VCX3AQ9NNX9 TACR3-201ENST00000304883 5190 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
VCX3AQ9NNX9 PTPRN2-201ENST00000389413 4723 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
VCX3AQ9NNX9 NR2F1-205ENST00000615873 1427 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
VCX3AQ9NNX9 HCK-202ENST00000375852 2082 ntAPPRIS ALT2 TSL 1 (best) BASIC17.03■□□□□ 0.32
VCX3AQ9NNX9 OTOP2-202ENST00000580223 2086 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
VCX3AQ9NNX9 TBC1D10B-201ENST00000409939 3350 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
VCX3AQ9NNX9 PTK6-202ENST00000542869 2931 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
VCX3AQ9NNX9 GALNT16-204ENST00000553669 1629 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
VCX3AQ9NNX9 ALPPL2-201ENST00000295453 2493 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
VCX3AQ9NNX9 DPY19L3-206ENST00000587077 2456 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
VCX3AQ9NNX9 ROBO1-209ENST00000495273 5600 ntAPPRIS P3 TSL 1 (best) BASIC17.02■□□□□ 0.32
VCX3AQ9NNX9 TMEM91-203ENST00000392002 1389 ntAPPRIS P1 TSL 2 BASIC17.02■□□□□ 0.32
VCX3AQ9NNX9 PRKX-201ENST00000262848 6031 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
VCX3AQ9NNX9 ASAH1-201ENST00000262097 2618 ntAPPRIS P2 TSL 1 (best) BASIC17.02■□□□□ 0.32
VCX3AQ9NNX9 ASXL1-210ENST00000613218 7038 ntAPPRIS ALT2 TSL 5 BASIC17.02■□□□□ 0.32
VCX3AQ9NNX9 NEIL1-221ENST00000569035 1797 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
VCX3AQ9NNX9 WASHC2C-202ENST00000359860 4471 ntAPPRIS ALT2 TSL 5 BASIC17.02■□□□□ 0.32
VCX3AQ9NNX9 PML-211ENST00000564428 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC17.02■□□□□ 0.32
VCX3AQ9NNX9 SLA2-202ENST00000360672 2171 ntTSL 5 BASIC17.02■□□□□ 0.32
VCX3AQ9NNX9 ITGB7-202ENST00000422257 2791 ntAPPRIS P1 TSL 5 BASIC17.02■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 26.9 ms