Protein–RNA interactions for Protein: Q8IXF0

NPAS3, Neuronal PAS domain-containing protein 3, humanhuman

Predictions only

Length 933 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPAS3Q8IXF0 IGHV3-15-201ENST00000390603 437 ntAPPRIS P1 BASIC18.82■□□□□ 0.6
NPAS3Q8IXF0 HCG15-203ENST00000438190 1032 ntTSL 3 BASIC18.82■□□□□ 0.6
NPAS3Q8IXF0 RPL13AP23-201ENST00000480739 586 ntBASIC18.82■□□□□ 0.6
NPAS3Q8IXF0 FIBP-212ENST00000533045 1173 ntTSL 5 BASIC18.82■□□□□ 0.6
NPAS3Q8IXF0 DYNLL1-204ENST00000548214 616 ntTSL 2 BASIC18.82■□□□□ 0.6
NPAS3Q8IXF0 CIRBP-235ENST00000591935 746 ntAPPRIS ALT1 TSL 3 BASIC18.82■□□□□ 0.6
NPAS3Q8IXF0 AC011467.2-201ENST00000598425 242 ntBASIC18.82■□□□□ 0.6
NPAS3Q8IXF0 LINC01607-201ENST00000607172 621 ntTSL 2 BASIC18.82■□□□□ 0.6
NPAS3Q8IXF0 FOXP1-223ENST00000622151 429 ntTSL 3 BASIC18.82■□□□□ 0.6
NPAS3Q8IXF0 PSPC1-206ENST00000619300 2013 ntAPPRIS P1 TSL 5 BASIC18.82■□□□□ 0.6
NPAS3Q8IXF0 FBLN1-201ENST00000262722 2251 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
NPAS3Q8IXF0 SPAG16-204ENST00000413312 2258 ntTSL 5 BASIC18.82■□□□□ 0.6
NPAS3Q8IXF0 IMPDH1-214ENST00000496200 2283 ntTSL 2 BASIC18.82■□□□□ 0.6
NPAS3Q8IXF0 VSTM2A-203ENST00000404951 2521 ntTSL 5 BASIC18.82■□□□□ 0.6
NPAS3Q8IXF0 ADK-206ENST00000541550 2222 ntTSL 2 BASIC18.82■□□□□ 0.6
NPAS3Q8IXF0 MEN1-208ENST00000394374 3155 ntAPPRIS P3 TSL 5 BASIC18.82■□□□□ 0.6
NPAS3Q8IXF0 CDC42EP1-201ENST00000249014 2181 ntAPPRIS P2 TSL 1 (best) BASIC18.82■□□□□ 0.6
NPAS3Q8IXF0 GPR62-201ENST00000322241 2191 ntAPPRIS P1 BASIC18.82■□□□□ 0.6
NPAS3Q8IXF0 AL691447.2-201ENST00000454869 2162 ntTSL 2 BASIC18.82■□□□□ 0.6
NPAS3Q8IXF0 ANXA3-201ENST00000264908 1657 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
NPAS3Q8IXF0 RBFOX1-204ENST00000422070 1684 ntTSL 2 BASIC18.82■□□□□ 0.6
NPAS3Q8IXF0 PDZD3-203ENST00000525131 1882 ntTSL 2 BASIC18.82■□□□□ 0.6
NPAS3Q8IXF0 LINC00602-201ENST00000629776 2065 ntBASIC18.81■□□□□ 0.6
NPAS3Q8IXF0 HMGN1-204ENST00000380749 1383 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
NPAS3Q8IXF0 KDM2A-202ENST00000398645 6511 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
NPAS3Q8IXF0 RCCD1-201ENST00000394258 2689 ntAPPRIS P2 TSL 1 (best) BASIC18.81■□□□□ 0.6
NPAS3Q8IXF0 LRWD1-201ENST00000292616 2215 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
NPAS3Q8IXF0 TRIB3-202ENST00000422053 1533 ntAPPRIS ALT2 TSL 2 BASIC18.81■□□□□ 0.6
NPAS3Q8IXF0 TCAIM-203ENST00000396078 2178 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
NPAS3Q8IXF0 SHROOM1-202ENST00000378676 2352 ntAPPRIS ALT2 TSL 5 BASIC18.81■□□□□ 0.6
NPAS3Q8IXF0 USP39-202ENST00000409025 1946 ntTSL 5 BASIC18.81■□□□□ 0.6
NPAS3Q8IXF0 TRA2B-202ENST00000342294 288 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
NPAS3Q8IXF0 UPK3A-202ENST00000396082 627 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
NPAS3Q8IXF0 AP000688.4-201ENST00000436303 446 ntTSL 3 BASIC18.81■□□□□ 0.6
NPAS3Q8IXF0 GABARAP-204ENST00000571253 837 ntTSL 2 BASIC18.81■□□□□ 0.6
NPAS3Q8IXF0 AC107896.1-201ENST00000593212 548 ntTSL 4 BASIC18.81■□□□□ 0.6
NPAS3Q8IXF0 AC114488.2-214ENST00000609033 813 ntTSL 5 BASIC18.81■□□□□ 0.6
NPAS3Q8IXF0 CHST13-202ENST00000615522 1146 ntTSL 5 BASIC18.81■□□□□ 0.6
NPAS3Q8IXF0 HNF1B-206ENST00000620125 1103 ntTSL 5 BASIC18.81■□□□□ 0.6
NPAS3Q8IXF0 ST8SIA5-202ENST00000536490 1499 ntTSL 2 BASIC18.81■□□□□ 0.6
NPAS3Q8IXF0 LGALS12-201ENST00000255684 1667 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
NPAS3Q8IXF0 TSR1-201ENST00000301364 5188 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
NPAS3Q8IXF0 BHLHE22-201ENST00000321870 3262 ntAPPRIS P1 BASIC18.81■□□□□ 0.6
NPAS3Q8IXF0 AC125634.1-201ENST00000438758 1403 ntBASIC18.81■□□□□ 0.6
NPAS3Q8IXF0 E4F1-201ENST00000301727 2573 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
NPAS3Q8IXF0 DHRS12-201ENST00000218981 1970 ntTSL 2 BASIC18.81■□□□□ 0.6
NPAS3Q8IXF0 INPP5J-203ENST00000401755 1751 ntTSL 2 BASIC18.81■□□□□ 0.6
NPAS3Q8IXF0 PRR14-203ENST00000542965 2316 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
NPAS3Q8IXF0 HOXC10-201ENST00000303460 1936 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
NPAS3Q8IXF0 ERLIN2-202ENST00000335171 1742 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
NPAS3Q8IXF0 CWH43-201ENST00000226432 2472 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
NPAS3Q8IXF0 YAP1-208ENST00000531439 1490 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
NPAS3Q8IXF0 RNF38-202ENST00000350199 5104 ntAPPRIS P1 TSL 5 BASIC18.8■□□□□ 0.6
NPAS3Q8IXF0 AIRN-201ENST00000601203 4374 ntBASIC18.8■□□□□ 0.6
NPAS3Q8IXF0 AMACR-208ENST00000512079 858 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
NPAS3Q8IXF0 MTUS2-205ENST00000542829 1165 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
NPAS3Q8IXF0 AC021739.2-201ENST00000558375 964 ntTSL 5 BASIC18.8■□□□□ 0.6
NPAS3Q8IXF0 LINC01956-202ENST00000584273 612 ntTSL 3 BASIC18.8■□□□□ 0.6
NPAS3Q8IXF0 AC005632.4-201ENST00000613759 431 ntTSL 3 BASIC18.8■□□□□ 0.6
NPAS3Q8IXF0 AC116407.3-201ENST00000623905 1129 ntBASIC18.8■□□□□ 0.6
NPAS3Q8IXF0 ANKMY2-206ENST00000628652 1270 ntTSL 5 BASIC18.8■□□□□ 0.6
NPAS3Q8IXF0 AC060780.1-201ENST00000635600 1782 ntTSL 5 BASIC18.8■□□□□ 0.6
NPAS3Q8IXF0 CCDC34-202ENST00000328697 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
NPAS3Q8IXF0 TRMT2A-203ENST00000404751 2498 ntAPPRIS ALT2 TSL 2 BASIC18.8■□□□□ 0.6
NPAS3Q8IXF0 CLK2-202ENST00000361168 1934 ntAPPRIS P3 TSL 1 (best) BASIC18.8■□□□□ 0.6
NPAS3Q8IXF0 C16orf59-210ENST00000569496 1911 ntAPPRIS ALT2 TSL 5 BASIC18.8■□□□□ 0.6
NPAS3Q8IXF0 HOXA11-201ENST00000006015 2295 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
NPAS3Q8IXF0 FAM129C-201ENST00000332386 2222 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
NPAS3Q8IXF0 COL13A1-205ENST00000398978 3093 ntAPPRIS P4 TSL 5 BASIC18.8■□□□□ 0.6
NPAS3Q8IXF0 MARK1-203ENST00000402574 5273 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
NPAS3Q8IXF0 MFSD1-219ENST00000622669 2361 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
NPAS3Q8IXF0 AC044802.1-201ENST00000501143 2894 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
NPAS3Q8IXF0 ANKRD53-202ENST00000360589 1666 ntAPPRIS ALT2 TSL 2 BASIC18.79■□□□□ 0.6
NPAS3Q8IXF0 CEP78-202ENST00000376597 2618 ntAPPRIS P4 TSL 1 (best) BASIC18.79■□□□□ 0.6
NPAS3Q8IXF0 CDK13-202ENST00000340829 5066 ntAPPRIS ALT1 TSL 1 (best) BASIC18.79■□□□□ 0.6
NPAS3Q8IXF0 TINCR-201ENST00000448587 3733 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
NPAS3Q8IXF0 HTRA4-201ENST00000302495 2095 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
NPAS3Q8IXF0 LAMTOR5-201ENST00000256644 868 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
NPAS3Q8IXF0 RBSN-204ENST00000449050 903 ntTSL 2 BASIC18.79■□□□□ 0.6
NPAS3Q8IXF0 HFE-210ENST00000470149 1123 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
NPAS3Q8IXF0 LAMTOR5-204ENST00000483260 694 ntTSL 2 BASIC18.79■□□□□ 0.6
NPAS3Q8IXF0 AC116021.1-201ENST00000530049 653 ntTSL 3 BASIC18.79■□□□□ 0.6
NPAS3Q8IXF0 AC092865.5-201ENST00000545435 363 ntBASIC18.79■□□□□ 0.6
NPAS3Q8IXF0 PAM16-208ENST00000573553 722 ntTSL 2 BASIC18.79■□□□□ 0.6
NPAS3Q8IXF0 PIN1-206ENST00000587625 878 ntTSL 2 BASIC18.79■□□□□ 0.6
NPAS3Q8IXF0 AC010632.1-201ENST00000590376 572 ntTSL 4 BASIC18.79■□□□□ 0.6
NPAS3Q8IXF0 LAMTOR5-206ENST00000602318 634 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
NPAS3Q8IXF0 ANXA8-208ENST00000611843 2174 ntTSL 2 BASIC18.79■□□□□ 0.6
NPAS3Q8IXF0 BRAF-201ENST00000288602 2480 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
NPAS3Q8IXF0 ZNF281-202ENST00000367352 2933 ntAPPRIS ALT2 TSL 2 BASIC18.79■□□□□ 0.6
NPAS3Q8IXF0 KCNS2-201ENST00000287042 5219 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
NPAS3Q8IXF0 DPF1-203ENST00000414789 1960 ntTSL 2 BASIC18.79■□□□□ 0.6
NPAS3Q8IXF0 TOP1MT-218ENST00000523676 1982 ntTSL 5 BASIC18.79■□□□□ 0.6
NPAS3Q8IXF0 AC008073.3-201ENST00000610442 2281 ntAPPRIS P1 TSL 2 BASIC18.79■□□□□ 0.6
NPAS3Q8IXF0 CHRNA10-201ENST00000250699 1945 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
NPAS3Q8IXF0 C11orf80-214ENST00000532565 1948 ntAPPRIS ALT2 TSL 5 BASIC18.78■□□□□ 0.6
NPAS3Q8IXF0 PTGES2-201ENST00000277462 1614 ntTSL 2 BASIC18.78■□□□□ 0.6
NPAS3Q8IXF0 PVR-204ENST00000406449 1344 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
NPAS3Q8IXF0 PMS2P7-201ENST00000506558 1336 ntBASIC18.78■□□□□ 0.6
NPAS3Q8IXF0 AL499627.1-201ENST00000569373 2188 ntBASIC18.78■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 27.7 ms