Protein–RNA interactions for Protein: Q7Z6J0

SH3RF1, E3 ubiquitin-protein ligase SH3RF1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SH3RF1Q7Z6J0 ANXA3-201ENST00000264908 1657 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
SH3RF1Q7Z6J0 PCDHA1-202ENST00000394633 2204 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
SH3RF1Q7Z6J0 SIX5-201ENST00000317578 3318 ntAPPRIS P2 TSL 1 (best) BASIC20.86■□□□□ 0.93
SH3RF1Q7Z6J0 MIR4300HG-201ENST00000500502 1397 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
SH3RF1Q7Z6J0 DYNLL1-209ENST00000550845 1376 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
SH3RF1Q7Z6J0 C19orf25-207ENST00000588871 2128 ntTSL 5 BASIC20.86■□□□□ 0.93
SH3RF1Q7Z6J0 OSR2-201ENST00000297565 1838 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
SH3RF1Q7Z6J0 C8orf58-207ENST00000615223 1848 ntAPPRIS ALT2 TSL 5 BASIC20.86■□□□□ 0.93
SH3RF1Q7Z6J0 MIR662-201ENST00000384847 95 ntBASIC20.86■□□□□ 0.93
SH3RF1Q7Z6J0 MIR564-202ENST00000385049 94 ntBASIC20.86■□□□□ 0.93
SH3RF1Q7Z6J0 SEC1P-202ENST00000473944 940 ntBASIC20.86■□□□□ 0.93
SH3RF1Q7Z6J0 LINC00595-207ENST00000476909 792 ntTSL 2 BASIC20.86■□□□□ 0.93
SH3RF1Q7Z6J0 AC079848.1-202ENST00000507924 444 ntTSL 3 BASIC20.86■□□□□ 0.93
SH3RF1Q7Z6J0 BMF-207ENST00000559701 630 ntTSL 3 BASIC20.86■□□□□ 0.93
SH3RF1Q7Z6J0 GNAS-AS1-203ENST00000598163 548 ntTSL 4 BASIC20.86■□□□□ 0.93
SH3RF1Q7Z6J0 STARD7-AS1-202ENST00000446816 1527 ntTSL 2 BASIC20.86■□□□□ 0.93
SH3RF1Q7Z6J0 MAPKAPK2-202ENST00000367103 2961 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
SH3RF1Q7Z6J0 RSPO4-201ENST00000217260 2707 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
SH3RF1Q7Z6J0 NRXN2-203ENST00000377551 6373 ntAPPRIS P3 TSL 1 (best) BASIC20.86■□□□□ 0.93
SH3RF1Q7Z6J0 AC022916.1-201ENST00000590478 2658 ntTSL 2 BASIC20.86■□□□□ 0.93
SH3RF1Q7Z6J0 NRBP1-203ENST00000379852 2163 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
SH3RF1Q7Z6J0 WNT5B-203ENST00000537031 1437 ntAPPRIS P1 TSL 2 BASIC20.86■□□□□ 0.93
SH3RF1Q7Z6J0 CHRFAM7A-202ENST00000397827 2794 ntTSL 5 BASIC20.85■□□□□ 0.93
SH3RF1Q7Z6J0 PHF12-201ENST00000268756 2957 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
SH3RF1Q7Z6J0 SLC35E4-201ENST00000343605 2714 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
SH3RF1Q7Z6J0 PLPP4-202ENST00000398250 1521 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
SH3RF1Q7Z6J0 CSNK2A2-201ENST00000262506 1701 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
SH3RF1Q7Z6J0 OSMR-202ENST00000502536 1740 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
SH3RF1Q7Z6J0 AKAP17A-201ENST00000313871 3204 ntAPPRIS P2 TSL 1 (best) BASIC20.85■□□□□ 0.93
SH3RF1Q7Z6J0 BAG3-201ENST00000369085 2571 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
SH3RF1Q7Z6J0 ENSA-205ENST00000361532 792 ntTSL 2 BASIC20.85■□□□□ 0.93
SH3RF1Q7Z6J0 C1orf43-204ENST00000368518 1278 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
SH3RF1Q7Z6J0 C7orf34-201ENST00000409607 766 ntAPPRIS P2 TSL 1 (best) BASIC20.85■□□□□ 0.93
SH3RF1Q7Z6J0 NOP16-205ENST00000509257 1000 ntTSL 2 BASIC20.85■□□□□ 0.93
SH3RF1Q7Z6J0 LINC01711-201ENST00000598340 967 ntBASIC20.85■□□□□ 0.93
SH3RF1Q7Z6J0 RASSF7-205ENST00000454668 1450 ntAPPRIS ALT2 TSL 1 (best) BASIC20.85■□□□□ 0.93
SH3RF1Q7Z6J0 SLC39A3-202ENST00000455372 2940 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
SH3RF1Q7Z6J0 SEC61A2-201ENST00000298428 1893 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
SH3RF1Q7Z6J0 MCCC1-214ENST00000610757 2410 ntTSL 5 BASIC20.85■□□□□ 0.93
SH3RF1Q7Z6J0 FAM213B-201ENST00000378424 2765 ntAPPRIS ALT2 TSL 5 BASIC20.85■□□□□ 0.93
SH3RF1Q7Z6J0 DCST1-204ENST00000423025 2199 ntAPPRIS ALT2 TSL 2 BASIC20.85■□□□□ 0.93
SH3RF1Q7Z6J0 RASSF1-201ENST00000327761 1757 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
SH3RF1Q7Z6J0 PIP4K2C-202ENST00000422156 1558 ntTSL 2 BASIC20.85■□□□□ 0.93
SH3RF1Q7Z6J0 SEMA6D-205ENST00000389425 2318 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
SH3RF1Q7Z6J0 INO80E-207ENST00000563197 2103 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
SH3RF1Q7Z6J0 CTNNBL1-201ENST00000361383 1925 ntAPPRIS P2 TSL 1 (best) BASIC20.84■□□□□ 0.93
SH3RF1Q7Z6J0 GTF2IRD2-207ENST00000625377 1910 ntTSL 5 BASIC20.84■□□□□ 0.93
SH3RF1Q7Z6J0 EIF2B5-201ENST00000273783 2655 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
SH3RF1Q7Z6J0 IFFO1-204ENST00000396840 2677 ntAPPRIS ALT1 TSL 5 BASIC20.84■□□□□ 0.93
SH3RF1Q7Z6J0 STEAP1B-201ENST00000404369 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC20.84■□□□□ 0.93
SH3RF1Q7Z6J0 NCF1B-201ENST00000423083 1516 ntTSL 2 BASIC20.84■□□□□ 0.93
SH3RF1Q7Z6J0 HLA-A-201ENST00000376802 1334 ntBASIC20.84■□□□□ 0.93
SH3RF1Q7Z6J0 LINC00960-201ENST00000463183 1333 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
SH3RF1Q7Z6J0 PPP2R2B-203ENST00000394411 2071 ntAPPRIS P1 TSL 2 BASIC20.84■□□□□ 0.93
SH3RF1Q7Z6J0 TXNRD3-202ENST00000523403 2351 ntAPPRIS ALT2 TSL 2 BASIC20.84■□□□□ 0.93
SH3RF1Q7Z6J0 AL391807.1-203ENST00000604392 2365 ntBASIC20.84■□□□□ 0.93
SH3RF1Q7Z6J0 EXOSC4-201ENST00000316052 887 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
SH3RF1Q7Z6J0 ITM2C-204ENST00000409704 1106 ntTSL 5 BASIC20.84■□□□□ 0.93
SH3RF1Q7Z6J0 AL161452.1-201ENST00000415062 1117 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
SH3RF1Q7Z6J0 KRT16P4-201ENST00000453883 522 ntBASIC20.84■□□□□ 0.93
SH3RF1Q7Z6J0 AL611929.1-201ENST00000457340 449 ntTSL 3 BASIC20.84■□□□□ 0.93
SH3RF1Q7Z6J0 RPL26L1-205ENST00000519974 695 ntAPPRIS P1 TSL 3 BASIC20.84■□□□□ 0.93
SH3RF1Q7Z6J0 PLPP5-214ENST00000531823 875 ntTSL 3 BASIC20.84■□□□□ 0.93
SH3RF1Q7Z6J0 AC079031.1-201ENST00000542627 1035 ntTSL 3 BASIC20.84■□□□□ 0.93
SH3RF1Q7Z6J0 AC012615.1-201ENST00000565797 1299 ntBASIC20.84■□□□□ 0.93
SH3RF1Q7Z6J0 AC120114.3-201ENST00000611923 658 ntBASIC20.84■□□□□ 0.93
SH3RF1Q7Z6J0 AC243773.1-201ENST00000614759 544 ntTSL 5 BASIC20.84■□□□□ 0.93
SH3RF1Q7Z6J0 RNFT2-209ENST00000622220 2176 ntTSL 5 BASIC20.84■□□□□ 0.93
SH3RF1Q7Z6J0 NAP1L5-201ENST00000323061 2321 ntAPPRIS P1 BASIC20.84■□□□□ 0.93
SH3RF1Q7Z6J0 CABP4-202ENST00000438189 1426 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
SH3RF1Q7Z6J0 CCSAP-203ENST00000366687 5089 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
SH3RF1Q7Z6J0 NOC2LP2-201ENST00000407594 1944 ntBASIC20.84■□□□□ 0.93
SH3RF1Q7Z6J0 MYLKP1-201ENST00000509077 1580 ntBASIC20.84■□□□□ 0.93
SH3RF1Q7Z6J0 TOX2-205ENST00000423191 1709 ntTSL 2 BASIC20.84■□□□□ 0.93
SH3RF1Q7Z6J0 RASA4B-201ENST00000306682 2589 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
SH3RF1Q7Z6J0 SMARCC2-203ENST00000394023 4271 ntAPPRIS ALT2 TSL 1 (best) BASIC20.84■□□□□ 0.93
SH3RF1Q7Z6J0 ASPHD2-201ENST00000215906 3357 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
SH3RF1Q7Z6J0 SPART-209ENST00000494062 3018 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
SH3RF1Q7Z6J0 PCCA-202ENST00000376285 2494 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
SH3RF1Q7Z6J0 SMARCC2-201ENST00000267064 4076 ntAPPRIS P4 TSL 1 (best) BASIC20.83■□□□□ 0.93
SH3RF1Q7Z6J0 CD1E-203ENST00000368156 861 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
SH3RF1Q7Z6J0 CD1E-209ENST00000368164 869 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
SH3RF1Q7Z6J0 PRSS42-201ENST00000429665 882 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
SH3RF1Q7Z6J0 AL133343.2-201ENST00000457213 370 ntTSL 3 BASIC20.83■□□□□ 0.93
SH3RF1Q7Z6J0 AL662844.1-201ENST00000546340 181 ntBASIC20.83■□□□□ 0.93
SH3RF1Q7Z6J0 AC243965.1-201ENST00000557595 781 ntTSL 3 BASIC20.83■□□□□ 0.93
SH3RF1Q7Z6J0 AC009084.1-201ENST00000566869 317 ntTSL 5 BASIC20.83■□□□□ 0.93
SH3RF1Q7Z6J0 AL136038.4-201ENST00000603606 1261 ntBASIC20.83■□□□□ 0.93
SH3RF1Q7Z6J0 AL121912.1-201ENST00000603683 238 ntBASIC20.83■□□□□ 0.93
SH3RF1Q7Z6J0 PGLYRP2-202ENST00000340880 2230 ntAPPRIS P2 TSL 1 (best) BASIC20.83■□□□□ 0.93
SH3RF1Q7Z6J0 FBXL15-201ENST00000224862 2362 ntAPPRIS P2 TSL 1 (best) BASIC20.83■□□□□ 0.93
SH3RF1Q7Z6J0 SCARF1-202ENST00000348987 2619 ntTSL 1 (best) BASIC20.83■□□□□ 0.92
SH3RF1Q7Z6J0 SLC37A2-203ENST00000403796 2910 ntAPPRIS ALT1 TSL 2 BASIC20.83■□□□□ 0.92
SH3RF1Q7Z6J0 SNX18-203ENST00000381410 5218 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
SH3RF1Q7Z6J0 ZNF655-203ENST00000357864 1370 ntTSL 2 BASIC20.83■□□□□ 0.92
SH3RF1Q7Z6J0 BAIAP2L2-202ENST00000381669 2146 ntAPPRIS P2 TSL 1 (best) BASIC20.83■□□□□ 0.92
SH3RF1Q7Z6J0 FAM222A-202ENST00000538780 3294 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
SH3RF1Q7Z6J0 RRP7BP-201ENST00000357802 2375 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
SH3RF1Q7Z6J0 TAX1BP3-202ENST00000611779 1302 ntTSL 2 BASIC20.82■□□□□ 0.92
SH3RF1Q7Z6J0 AC135776.1-201ENST00000319817 2481 ntBASIC20.82■□□□□ 0.92
Retrieved 100 of 98,524 protein–RNA pairs in 38.7 ms