Protein–RNA interactions for Protein: Q6A163

KRT39, Keratin, type I cytoskeletal 39, humanhuman

Predictions only

Length 491 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KRT39Q6A163 NR5A1-202ENST00000373588 3104 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
KRT39Q6A163 MEST-201ENST00000223215 2465 ntAPPRIS P4 TSL 1 (best) BASIC19.67■□□□□ 0.74
KRT39Q6A163 AC138028.4-201ENST00000564984 1845 ntBASIC19.67■□□□□ 0.74
KRT39Q6A163 RPS6KA1-204ENST00000374168 3186 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
KRT39Q6A163 CHTF8-203ENST00000448552 2903 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
KRT39Q6A163 RNF121-201ENST00000361756 2625 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
KRT39Q6A163 HAPLN4-201ENST00000291481 3449 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
KRT39Q6A163 ZNF668-202ENST00000394983 2717 ntAPPRIS P1 TSL 5 BASIC19.67■□□□□ 0.74
KRT39Q6A163 PYDC1-201ENST00000302964 813 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
KRT39Q6A163 FAM8A6P-201ENST00000407496 1135 ntBASIC19.67■□□□□ 0.74
KRT39Q6A163 AC131097.3-201ENST00000413820 1228 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
KRT39Q6A163 AC114763.1-202ENST00000414911 867 ntTSL 3 BASIC19.67■□□□□ 0.74
KRT39Q6A163 MALL-203ENST00000427178 1070 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
KRT39Q6A163 DUX4L26-201ENST00000489078 1255 ntBASIC19.67■□□□□ 0.74
KRT39Q6A163 LTBR-211ENST00000543190 785 ntTSL 3 BASIC19.67■□□□□ 0.74
KRT39Q6A163 BVES-AS1-203ENST00000580511 853 ntTSL 5 BASIC19.67■□□□□ 0.74
KRT39Q6A163 AC092902.2-222ENST00000626312 568 ntTSL 5 BASIC19.67■□□□□ 0.74
KRT39Q6A163 ARL5A-201ENST00000295087 5326 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
KRT39Q6A163 ELOC-209ENST00000602840 2780 ntTSL 5 BASIC19.67■□□□□ 0.74
KRT39Q6A163 NSUN5-201ENST00000252594 1672 ntAPPRIS ALT2 TSL 1 (best) BASIC19.67■□□□□ 0.74
KRT39Q6A163 MIDN-206ENST00000591446 3243 ntAPPRIS P2 TSL 1 (best) BASIC19.67■□□□□ 0.74
KRT39Q6A163 LPAR2-201ENST00000407877 1791 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
KRT39Q6A163 MON1B-202ENST00000439557 1759 ntTSL 2 BASIC19.67■□□□□ 0.74
KRT39Q6A163 PDE4A-202ENST00000344979 2579 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
KRT39Q6A163 UBE2Q2-208ENST00000569423 2969 ntTSL 2 BASIC19.67■□□□□ 0.74
KRT39Q6A163 ACSF2-201ENST00000300441 2235 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
KRT39Q6A163 POC1B-GALNT4-201ENST00000547474 2207 ntTSL 2 BASIC19.67■□□□□ 0.74
KRT39Q6A163 SIM2-201ENST00000290399 4442 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
KRT39Q6A163 SP100-208ENST00000427101 1922 ntTSL 2 BASIC19.66■□□□□ 0.74
KRT39Q6A163 PDIA2-202ENST00000404312 1575 ntAPPRIS ALT2 TSL 5 BASIC19.66■□□□□ 0.74
KRT39Q6A163 ACAP3-202ENST00000354700 3896 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
KRT39Q6A163 BTBD11-201ENST00000280758 5767 ntAPPRIS P3 TSL 5 BASIC19.66■□□□□ 0.74
KRT39Q6A163 KCNC4-203ENST00000413138 3018 ntAPPRIS ALT2 TSL 5 BASIC19.66■□□□□ 0.74
KRT39Q6A163 NKX2-1-203ENST00000518149 2583 ntAPPRIS P1 TSL 5 BASIC19.66■□□□□ 0.74
KRT39Q6A163 AC007040.2-201ENST00000606025 4170 ntAPPRIS P1 TSL 5 BASIC19.66■□□□□ 0.74
KRT39Q6A163 ISY1-201ENST00000273541 1704 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
KRT39Q6A163 MECP2-205ENST00000453960 1729 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
KRT39Q6A163 PLEKHG5-206ENST00000377748 5221 ntAPPRIS ALT2 TSL 2 BASIC19.66■□□□□ 0.74
KRT39Q6A163 PAX3-201ENST00000258387 958 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
KRT39Q6A163 C6orf48-206ENST00000375641 602 ntAPPRIS P1 TSL 2 BASIC19.66■□□□□ 0.74
KRT39Q6A163 PLCB1-204ENST00000404098 1260 ntTSL 3 BASIC19.66■□□□□ 0.74
KRT39Q6A163 AC112907.2-201ENST00000448639 330 ntBASIC19.66■□□□□ 0.74
KRT39Q6A163 AC092597.1-201ENST00000487352 616 ntBASIC19.66■□□□□ 0.74
KRT39Q6A163 KRT18P21-201ENST00000515767 1272 ntBASIC19.66■□□□□ 0.74
KRT39Q6A163 ENDOV-202ENST00000517295 908 ntTSL 3 BASIC19.66■□□□□ 0.74
KRT39Q6A163 MAP3K14-AS1-202ENST00000585351 893 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
KRT39Q6A163 AC024563.2-201ENST00000603282 481 ntBASIC19.66■□□□□ 0.74
KRT39Q6A163 BDKRB1-204ENST00000611804 1085 ntAPPRIS P1 BASIC19.66■□□□□ 0.74
KRT39Q6A163 UBE2I-207ENST00000406620 1842 ntAPPRIS P1 TSL 2 BASIC19.66■□□□□ 0.74
KRT39Q6A163 PARP16-202ENST00000444347 2352 ntTSL 2 BASIC19.66■□□□□ 0.74
KRT39Q6A163 TPRA1-204ENST00000450633 1865 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
KRT39Q6A163 WDR45-205ENST00000376358 1432 ntTSL 2 BASIC19.66■□□□□ 0.74
KRT39Q6A163 LAT-204ENST00000395461 1448 ntAPPRIS ALT2 TSL 1 (best) BASIC19.66■□□□□ 0.74
KRT39Q6A163 CD209-210ENST00000601951 1439 ntAPPRIS ALT2 TSL 1 (best) BASIC19.66■□□□□ 0.74
KRT39Q6A163 UBE2QL1-201ENST00000399816 4317 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
KRT39Q6A163 KRT89P-201ENST00000620027 1478 ntBASIC19.66■□□□□ 0.74
KRT39Q6A163 KCTD20-210ENST00000536244 5345 ntTSL 2 BASIC19.66■□□□□ 0.74
KRT39Q6A163 AP001626.1-201ENST00000424890 2854 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
KRT39Q6A163 MYO19-225ENST00000621344 1640 ntTSL 2 BASIC19.65■□□□□ 0.74
KRT39Q6A163 SMARCD3-202ENST00000356800 1669 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
KRT39Q6A163 NOMO1-201ENST00000287667 4355 ntAPPRIS P2 TSL 1 (best) BASIC19.65■□□□□ 0.74
KRT39Q6A163 SLC44A3-201ENST00000271227 2388 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
KRT39Q6A163 NPEPL1-204ENST00000525967 1917 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
KRT39Q6A163 THUMPD2-204ENST00000505747 1970 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
KRT39Q6A163 PXK-206ENST00000463280 2825 ntTSL 2 BASIC19.65■□□□□ 0.74
KRT39Q6A163 CADPS2-201ENST00000313070 6065 ntTSL 5 BASIC19.65■□□□□ 0.74
KRT39Q6A163 SLC23A3-203ENST00000409878 2010 ntAPPRIS P1 TSL 2 BASIC19.65■□□□□ 0.74
KRT39Q6A163 AL031658.1-201ENST00000449519 2013 ntTSL 2 BASIC19.65■□□□□ 0.74
KRT39Q6A163 RGN-204ENST00000457380 2041 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
KRT39Q6A163 COPE-201ENST00000262812 1141 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
KRT39Q6A163 TMEM190-201ENST00000291934 593 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
KRT39Q6A163 COPE-203ENST00000351079 907 ntTSL 2 BASIC19.65■□□□□ 0.74
KRT39Q6A163 AC022616.7-201ENST00000525383 220 ntBASIC19.65■□□□□ 0.74
KRT39Q6A163 IFI27L2-206ENST00000556727 556 ntTSL 3 BASIC19.65■□□□□ 0.74
KRT39Q6A163 AC099518.3-201ENST00000564808 809 ntAPPRIS P5 TSL 4 BASIC19.65■□□□□ 0.74
KRT39Q6A163 FGF14-AS2-201ENST00000606448 1074 ntBASIC19.65■□□□□ 0.74
KRT39Q6A163 ILKAP-212ENST00000622223 1088 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
KRT39Q6A163 KCNMA1-278ENST00000640141 5705 ntAPPRIS ALT2 TSL 5 BASIC19.65■□□□□ 0.74
KRT39Q6A163 CYB561-205ENST00000542042 1302 ntTSL 2 BASIC19.65■□□□□ 0.74
KRT39Q6A163 DNAJA3-203ENST00000431375 2294 ntTSL 2 BASIC19.65■□□□□ 0.74
KRT39Q6A163 C1QTNF1-209ENST00000581774 1368 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
KRT39Q6A163 FLJ13224-201ENST00000313737 1514 ntBASIC19.65■□□□□ 0.74
KRT39Q6A163 APBB1IP-201ENST00000356785 1513 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
KRT39Q6A163 ZNF667-AS1-201ENST00000585445 1521 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
KRT39Q6A163 HS2ST1-202ENST00000370551 1585 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
KRT39Q6A163 KANK3-201ENST00000330915 2787 ntAPPRIS P2 TSL 1 (best) BASIC19.65■□□□□ 0.74
KRT39Q6A163 TMSB4Y-201ENST00000284856 1669 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
KRT39Q6A163 GATA2-203ENST00000487848 1878 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
KRT39Q6A163 HCG11-201ENST00000411553 5696 ntBASIC19.65■□□□□ 0.74
KRT39Q6A163 C12orf65-202ENST00000366329 1901 ntAPPRIS P2 TSL 2 BASIC19.64■□□□□ 0.74
KRT39Q6A163 MFSD2A-203ENST00000420632 1914 ntTSL 2 BASIC19.64■□□□□ 0.74
KRT39Q6A163 POLR1D-220ENST00000637071 1943 ntTSL 5 BASIC19.64■□□□□ 0.74
KRT39Q6A163 ZSWIM5-201ENST00000359600 5819 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
KRT39Q6A163 GLB1-202ENST00000307377 2018 ntTSL 1 (best) BASIC19.64■□□□□ 0.74
KRT39Q6A163 NUDT10-202ENST00000376006 2001 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
KRT39Q6A163 MAEA-201ENST00000264750 2058 ntTSL 2 BASIC19.64■□□□□ 0.74
KRT39Q6A163 SMPD3-211ENST00000568373 2073 ntTSL 1 (best) BASIC19.64■□□□□ 0.74
KRT39Q6A163 ERI1-203ENST00000519292 2107 ntAPPRIS P1 TSL 2 BASIC19.64■□□□□ 0.74
KRT39Q6A163 C16orf58-202ENST00000430477 2471 ntAPPRIS P2 TSL 1 (best) BASIC19.64■□□□□ 0.74
KRT39Q6A163 MID1IP1-201ENST00000336949 2536 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
Retrieved 100 of 98,524 protein–RNA pairs in 26.7 ms