Protein–RNA interactions for Protein: Q3KNS1

PTCHD3, Patched domain-containing protein 3, humanhuman

Predictions only

Length 767 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3Q3KNS1 FAM213B-202ENST00000378425 2665 ntAPPRIS ALT2 TSL 2 BASIC17.83■□□□□ 0.44
PTCHD3Q3KNS1 PPP1R7-202ENST00000272983 1954 ntTSL 2 BASIC17.83■□□□□ 0.44
PTCHD3Q3KNS1 USP32-201ENST00000300896 5171 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
PTCHD3Q3KNS1 PFDN6-206ENST00000463584 1915 ntTSL 3 BASIC17.83■□□□□ 0.44
PTCHD3Q3KNS1 PYDC1-201ENST00000302964 813 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
PTCHD3Q3KNS1 PTGDS-202ENST00000371625 807 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
PTCHD3Q3KNS1 COMTD1-201ENST00000372538 976 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
PTCHD3Q3KNS1 GGT1-205ENST00000403838 1033 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
PTCHD3Q3KNS1 ST6GALNAC4P1-201ENST00000435385 499 ntBASIC17.83■□□□□ 0.44
PTCHD3Q3KNS1 C7orf49-209ENST00000483029 596 ntTSL 2 BASIC17.83■□□□□ 0.44
PTCHD3Q3KNS1 LCN10-205ENST00000497771 723 ntAPPRIS P2 TSL 1 (best) BASIC17.83■□□□□ 0.44
PTCHD3Q3KNS1 AC009065.1-201ENST00000564055 1225 ntBASIC17.83■□□□□ 0.44
PTCHD3Q3KNS1 BCL2L12-208ENST00000600947 633 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
PTCHD3Q3KNS1 DNAJB6-218ENST00000634080 1005 ntTSL 2 BASIC17.83■□□□□ 0.44
PTCHD3Q3KNS1 ANKRD36-207ENST00000639293 1168 ntAPPRIS ALT2 TSL 5 BASIC17.83■□□□□ 0.44
PTCHD3Q3KNS1 HCG11-201ENST00000411553 5696 ntBASIC17.83■□□□□ 0.44
PTCHD3Q3KNS1 EIF4ENIF1-202ENST00000344710 3115 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
PTCHD3Q3KNS1 IRAK3-202ENST00000457197 1853 ntTSL 2 BASIC17.83■□□□□ 0.44
PTCHD3Q3KNS1 GUCY1A2-201ENST00000282249 3047 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
PTCHD3Q3KNS1 DACT2-201ENST00000366795 2942 ntAPPRIS P3 TSL 2 BASIC17.83■□□□□ 0.44
PTCHD3Q3KNS1 GGT3P-201ENST00000412448 2340 ntTSL 2 BASIC17.83■□□□□ 0.44
PTCHD3Q3KNS1 RAP1GDS1-201ENST00000264572 1686 ntTSL 5 BASIC17.83■□□□□ 0.44
PTCHD3Q3KNS1 ENOPH1-202ENST00000505846 1689 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
PTCHD3Q3KNS1 MED9-201ENST00000268711 2228 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
PTCHD3Q3KNS1 CD276-201ENST00000318424 2738 ntTSL 5 BASIC17.83■□□□□ 0.44
PTCHD3Q3KNS1 PARP15-202ENST00000464300 2156 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
PTCHD3Q3KNS1 SEC14L2-215ENST00000617837 2632 ntTSL 2 BASIC17.83■□□□□ 0.44
PTCHD3Q3KNS1 PRRT2-212ENST00000636619 2065 ntTSL 5 BASIC17.83■□□□□ 0.44
PTCHD3Q3KNS1 AGER-205ENST00000375069 1538 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
PTCHD3Q3KNS1 GABBR1-204ENST00000377016 4299 ntTSL 5 BASIC17.82■□□□□ 0.44
PTCHD3Q3KNS1 FLYWCH1P1-201ENST00000460917 1874 ntBASIC17.82■□□□□ 0.44
PTCHD3Q3KNS1 RAB11FIP2-201ENST00000355624 6061 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
PTCHD3Q3KNS1 C2CD2L-205ENST00000528586 2320 ntTSL 2 BASIC17.82■□□□□ 0.44
PTCHD3Q3KNS1 SAMD11-212ENST00000617307 2314 ntAPPRIS ALT2 TSL 5 BASIC17.82■□□□□ 0.44
PTCHD3Q3KNS1 CRELD2-201ENST00000328268 1357 ntAPPRIS P3 TSL 1 (best) BASIC17.82■□□□□ 0.44
PTCHD3Q3KNS1 PPP2R2C-209ENST00000515571 1832 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
PTCHD3Q3KNS1 DCST1-204ENST00000423025 2199 ntAPPRIS ALT2 TSL 2 BASIC17.82■□□□□ 0.44
PTCHD3Q3KNS1 TBC1D7-201ENST00000343141 1027 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
PTCHD3Q3KNS1 YPEL3-201ENST00000398838 935 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
PTCHD3Q3KNS1 ISOC2-202ENST00000425675 998 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
PTCHD3Q3KNS1 MALL-203ENST00000427178 1070 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
PTCHD3Q3KNS1 AL162457.2-201ENST00000447909 937 ntTSL 3 BASIC17.82■□□□□ 0.44
PTCHD3Q3KNS1 NT5C2-211ENST00000470299 249 ntTSL 5 BASIC17.82■□□□□ 0.44
PTCHD3Q3KNS1 AC019068.1-202ENST00000483218 768 ntTSL 3 BASIC17.82■□□□□ 0.44
PTCHD3Q3KNS1 NBPF14-202ENST00000593495 1082 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
PTCHD3Q3KNS1 AC091076.1-201ENST00000610741 619 ntBASIC17.82■□□□□ 0.44
PTCHD3Q3KNS1 mascRNA-menRNA.2-201ENST00000616984 58 ntBASIC17.82■□□□□ 0.44
PTCHD3Q3KNS1 TTLL12-201ENST00000216129 3385 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
PTCHD3Q3KNS1 NGLY1-207ENST00000428257 2534 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
PTCHD3Q3KNS1 FSCN2-201ENST00000334850 1551 ntTSL 5 BASIC17.82■□□□□ 0.44
PTCHD3Q3KNS1 CCDC3-201ENST00000378825 2731 ntAPPRIS P3 TSL 1 (best) BASIC17.82■□□□□ 0.44
PTCHD3Q3KNS1 CDX4-201ENST00000373514 1515 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
PTCHD3Q3KNS1 POR-209ENST00000439269 1858 ntTSL 2 BASIC17.82■□□□□ 0.44
PTCHD3Q3KNS1 PTPRJ-207ENST00000613246 7851 ntAPPRIS ALT2 TSL 5 BASIC17.82■□□□□ 0.44
PTCHD3Q3KNS1 RNFT2-209ENST00000622220 2176 ntTSL 5 BASIC17.81■□□□□ 0.44
PTCHD3Q3KNS1 FIGNL2-201ENST00000564840 4693 ntAPPRIS P1 TSL 5 BASIC17.81■□□□□ 0.44
PTCHD3Q3KNS1 IDUA-210ENST00000514224 2130 ntTSL 2 BASIC17.81■□□□□ 0.44
PTCHD3Q3KNS1 ANKRD10-201ENST00000267339 2495 ntAPPRIS P1 TSL 2 BASIC17.81■□□□□ 0.44
PTCHD3Q3KNS1 PCCA-202ENST00000376285 2494 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
PTCHD3Q3KNS1 CGRRF1-201ENST00000216420 2057 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
PTCHD3Q3KNS1 NOP14-204ENST00000502735 2723 ntAPPRIS ALT2 TSL 5 BASIC17.81■□□□□ 0.44
PTCHD3Q3KNS1 GTF2IP1-210ENST00000622829 3605 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
PTCHD3Q3KNS1 LINC00535-201ENST00000501400 1914 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
PTCHD3Q3KNS1 UPK3BP1-201ENST00000428678 509 ntBASIC17.81■□□□□ 0.44
PTCHD3Q3KNS1 MFGE8-203ENST00000542878 1172 ntTSL 2 BASIC17.81■□□□□ 0.44
PTCHD3Q3KNS1 AC132938.3-201ENST00000579095 357 ntTSL 2 BASIC17.81■□□□□ 0.44
PTCHD3Q3KNS1 FAM104A-205ENST00000581110 512 ntTSL 2 BASIC17.81■□□□□ 0.44
PTCHD3Q3KNS1 ZNF575-205ENST00000601282 1086 ntAPPRIS P1 TSL 2 BASIC17.81■□□□□ 0.44
PTCHD3Q3KNS1 RNASET2-213ENST00000611959 1124 ntTSL 5 BASIC17.81■□□□□ 0.44
PTCHD3Q3KNS1 C1QTNF8-202ENST00000621771 897 ntTSL 5 BASIC17.81■□□□□ 0.44
PTCHD3Q3KNS1 AC064853.5-201ENST00000641976 258 ntAPPRIS P1 BASIC17.81■□□□□ 0.44
PTCHD3Q3KNS1 NOC2LP1-202ENST00000452600 2235 ntBASIC17.81■□□□□ 0.44
PTCHD3Q3KNS1 SLC35F5-201ENST00000245680 4412 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
PTCHD3Q3KNS1 YPEL3-202ENST00000398841 1588 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
PTCHD3Q3KNS1 PSMD8-207ENST00000592035 1581 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
PTCHD3Q3KNS1 ASCC2-202ENST00000397771 2823 ntAPPRIS P1 TSL 5 BASIC17.81■□□□□ 0.44
PTCHD3Q3KNS1 GPANK1-204ENST00000375900 1814 ntAPPRIS P1 TSL 2 BASIC17.81■□□□□ 0.44
PTCHD3Q3KNS1 PLCH2-205ENST00000449969 5450 ntTSL 5 BASIC17.81■□□□□ 0.44
PTCHD3Q3KNS1 VPS37B-201ENST00000267202 3028 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
PTCHD3Q3KNS1 AATK-203ENST00000417379 5081 ntAPPRIS ALT2 TSL 1 (best) BASIC17.81■□□□□ 0.44
PTCHD3Q3KNS1 STMN3-202ENST00000540534 2351 ntTSL 2 BASIC17.81■□□□□ 0.44
PTCHD3Q3KNS1 PRDM5-201ENST00000264808 5330 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
PTCHD3Q3KNS1 SPAG4-201ENST00000374273 1453 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
PTCHD3Q3KNS1 ADCY6-206ENST00000550422 5877 ntTSL 2 BASIC17.81■□□□□ 0.44
PTCHD3Q3KNS1 RAB29-205ENST00000446390 1441 ntTSL 2 BASIC17.81■□□□□ 0.44
PTCHD3Q3KNS1 DDX42-202ENST00000389924 3939 ntAPPRIS P1 TSL 5 BASIC17.8■□□□□ 0.44
PTCHD3Q3KNS1 SPPL2C-201ENST00000329196 2238 ntAPPRIS P1 BASIC17.8■□□□□ 0.44
PTCHD3Q3KNS1 ZDHHC20-201ENST00000320220 1351 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
PTCHD3Q3KNS1 DHRS4L2-201ENST00000335125 1370 ntAPPRIS P2 TSL 1 (best) BASIC17.8■□□□□ 0.44
PTCHD3Q3KNS1 FAM50B-201ENST00000380272 1628 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
PTCHD3Q3KNS1 TM2D2-201ENST00000397070 1631 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
PTCHD3Q3KNS1 FBXO44-201ENST00000251546 1896 ntTSL 2 BASIC17.8■□□□□ 0.44
PTCHD3Q3KNS1 IGLON5-201ENST00000270642 2606 ntAPPRIS P1 TSL 5 BASIC17.8■□□□□ 0.44
PTCHD3Q3KNS1 TTLL9-205ENST00000375938 2623 ntAPPRIS P2 TSL 2 BASIC17.8■□□□□ 0.44
PTCHD3Q3KNS1 CCNJL-203ENST00000393977 3320 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
PTCHD3Q3KNS1 GUCA1B-201ENST00000230361 1113 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
PTCHD3Q3KNS1 FAM86B2-202ENST00000309608 806 ntTSL 3 BASIC17.8■□□□□ 0.44
PTCHD3Q3KNS1 TSPAN14-202ENST00000341863 1037 ntTSL 5 BASIC17.8■□□□□ 0.44
PTCHD3Q3KNS1 CNTD2-203ENST00000513948 787 ntAPPRIS ALT2 TSL 2 BASIC17.8■□□□□ 0.44
PTCHD3Q3KNS1 DRAP1-205ENST00000527119 581 ntTSL 5 BASIC17.8■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 67.9 ms