Protein–RNA interactions for Protein: P78423

CX3CL1, Fractalkine, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CX3CL1P78423 AC073592.3-201ENST00000625118 1834 ntBASIC14.7□□□□□ -0.06
CX3CL1P78423 TAL1-201ENST00000294339 5001 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
CX3CL1P78423 FAM182B-201ENST00000376403 1681 ntAPPRIS P5 TSL 1 (best) BASIC14.7□□□□□ -0.06
CX3CL1P78423 KRAS-203ENST00000556131 1696 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
CX3CL1P78423 AC140125.2-201ENST00000502515 1517 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
CX3CL1P78423 PRRT1-201ENST00000211413 1909 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
CX3CL1P78423 FAM111A-204ENST00000528737 6189 ntAPPRIS P1 TSL 2 BASIC14.7□□□□□ -0.06
CX3CL1P78423 KIFC3-201ENST00000379655 3427 ntAPPRIS P3 TSL 1 (best) BASIC14.7□□□□□ -0.06
CX3CL1P78423 MCU-201ENST00000357157 2874 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
CX3CL1P78423 QPRT-202ENST00000395384 2343 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
CX3CL1P78423 TRIM63-201ENST00000374272 1770 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
CX3CL1P78423 HYOU1-212ENST00000532519 2162 ntTSL 5 BASIC14.7□□□□□ -0.06
CX3CL1P78423 NFATC1-210ENST00000587635 2195 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
CX3CL1P78423 F11R-202ENST00000368026 4835 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
CX3CL1P78423 SEC61A2-201ENST00000298428 1893 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
CX3CL1P78423 TCF4-201ENST00000354452 3482 ntAPPRIS ALT1 TSL 5 BASIC14.69□□□□□ -0.06
CX3CL1P78423 PTPDC1-202ENST00000375360 4517 ntAPPRIS ALT2 TSL 1 (best) BASIC14.69□□□□□ -0.06
CX3CL1P78423 MROH1-202ENST00000423230 1712 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
CX3CL1P78423 CD19-206ENST00000567541 1707 ntAPPRIS ALT2 TSL 1 (best) BASIC14.69□□□□□ -0.06
CX3CL1P78423 BIRC7-202ENST00000342412 1302 ntAPPRIS ALT2 TSL 1 (best) BASIC14.69□□□□□ -0.06
CX3CL1P78423 ANKS3-230ENST00000614075 2387 ntAPPRIS P1 TSL 5 BASIC14.69□□□□□ -0.06
CX3CL1P78423 SARAF-214ENST00000545648 1976 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
CX3CL1P78423 ECE1-203ENST00000374893 2484 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
CX3CL1P78423 TRIM73-205ENST00000450434 1425 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
CX3CL1P78423 KRT8P50-201ENST00000562022 1438 ntBASIC14.69□□□□□ -0.06
CX3CL1P78423 CORO6-212ENST00000584969 1416 ntAPPRIS ALT1 TSL 5 BASIC14.69□□□□□ -0.06
CX3CL1P78423 RABEP2-202ENST00000358201 2821 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
CX3CL1P78423 TUBA4A-201ENST00000248437 2162 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
CX3CL1P78423 PRORSD1P-202ENST00000563365 2154 ntBASIC14.69□□□□□ -0.06
CX3CL1P78423 EXOC3L2-201ENST00000252482 1230 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
CX3CL1P78423 UPK3B-201ENST00000257632 1296 ntAPPRIS P5 TSL 2 BASIC14.69□□□□□ -0.06
CX3CL1P78423 ECEL1P3-201ENST00000427961 737 ntBASIC14.69□□□□□ -0.06
CX3CL1P78423 LIN28AP1-201ENST00000429574 405 ntBASIC14.69□□□□□ -0.06
CX3CL1P78423 TMEM220-AS1-201ENST00000579114 575 ntTSL 4 BASIC14.69□□□□□ -0.06
CX3CL1P78423 NT5C-210ENST00000582160 860 ntTSL 2 BASIC14.69□□□□□ -0.06
CX3CL1P78423 PITPNB-211ENST00000634017 1017 ntAPPRIS ALT1 TSL 2 BASIC14.69□□□□□ -0.06
CX3CL1P78423 CYP51A1P1-201ENST00000492267 1507 ntBASIC14.69□□□□□ -0.06
CX3CL1P78423 GAS7-210ENST00000579158 1528 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
CX3CL1P78423 PNKP-224ENST00000631020 1545 ntTSL 5 BASIC14.69□□□□□ -0.06
CX3CL1P78423 MUTYH-202ENST00000355498 1776 ntAPPRIS ALT2 TSL 1 (best) BASIC14.69□□□□□ -0.06
CX3CL1P78423 LIN28B-AS1-203ENST00000636682 1797 ntTSL 3 BASIC14.69□□□□□ -0.06
CX3CL1P78423 FPGS-201ENST00000373225 2278 ntTSL 2 BASIC14.69□□□□□ -0.06
CX3CL1P78423 ATRIP-202ENST00000346691 2509 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
CX3CL1P78423 TMC6-202ENST00000322914 2786 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
CX3CL1P78423 CDH24-201ENST00000267383 2873 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
CX3CL1P78423 PDE9A-206ENST00000380328 1875 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
CX3CL1P78423 FAM20A-205ENST00000592554 2955 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
CX3CL1P78423 EMC8-201ENST00000253457 1962 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
CX3CL1P78423 OSMR-202ENST00000502536 1740 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
CX3CL1P78423 ENDOV-225ENST00000522751 1475 ntTSL 5 BASIC14.69□□□□□ -0.06
CX3CL1P78423 EPB41L3-207ENST00000545076 3190 ntAPPRIS ALT2 TSL 2 BASIC14.69□□□□□ -0.06
CX3CL1P78423 FDXR-214ENST00000581530 1827 ntAPPRIS P3 TSL 1 (best) BASIC14.69□□□□□ -0.06
CX3CL1P78423 C5orf30-203ENST00000515669 1573 ntAPPRIS P1 TSL 3 BASIC14.68□□□□□ -0.06
CX3CL1P78423 ZCCHC17-205ENST00000615916 1652 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
CX3CL1P78423 MAPT-205ENST00000351559 5811 ntAPPRIS ALT2 TSL 1 (best) BASIC14.68□□□□□ -0.06
CX3CL1P78423 EGFL6-202ENST00000380602 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC14.68□□□□□ -0.06
CX3CL1P78423 EGFL7-204ENST00000406555 1529 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
CX3CL1P78423 SLC26A11-212ENST00000572725 1862 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
CX3CL1P78423 ADAM23-201ENST00000264377 6330 ntAPPRIS P2 TSL 1 (best) BASIC14.68□□□□□ -0.06
CX3CL1P78423 MATN4-203ENST00000372754 2200 ntAPPRIS ALT2 TSL 5 BASIC14.68□□□□□ -0.06
CX3CL1P78423 SF1-203ENST00000377387 2947 ntAPPRIS ALT2 TSL 1 (best) BASIC14.68□□□□□ -0.06
CX3CL1P78423 SNAP23-201ENST00000249647 2687 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
CX3CL1P78423 EIF2B5-201ENST00000273783 2655 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
CX3CL1P78423 GYG2P1-201ENST00000357871 623 ntTSL 3 BASIC14.68□□□□□ -0.06
CX3CL1P78423 Telomerase-vert.1-201ENST00000363312 438 ntBASIC14.68□□□□□ -0.06
CX3CL1P78423 GAD2-202ENST00000376248 680 ntTSL 5 BASIC14.68□□□□□ -0.06
CX3CL1P78423 MED4-202ENST00000378586 931 ntAPPRIS ALT2 TSL 2 BASIC14.68□□□□□ -0.06
CX3CL1P78423 TSPY8-202ENST00000383000 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC14.68□□□□□ -0.06
CX3CL1P78423 TSPY2-202ENST00000383042 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC14.68□□□□□ -0.06
CX3CL1P78423 ICAM1-202ENST00000423829 1296 ntTSL 2 BASIC14.68□□□□□ -0.06
CX3CL1P78423 TSPY3-201ENST00000424594 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC14.68□□□□□ -0.06
CX3CL1P78423 GRAMD4P1-201ENST00000435181 1110 ntBASIC14.68□□□□□ -0.06
CX3CL1P78423 TSPY10-202ENST00000444056 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC14.68□□□□□ -0.06
CX3CL1P78423 ATP5G1P1-201ENST00000448724 379 ntBASIC14.68□□□□□ -0.06
CX3CL1P78423 AC008825.1-201ENST00000504398 452 ntTSL 3 BASIC14.68□□□□□ -0.06
CX3CL1P78423 SDR39U1-202ENST00000538105 1041 ntTSL 2 BASIC14.68□□□□□ -0.06
CX3CL1P78423 GCHFR-202ENST00000558467 785 ntTSL 2 BASIC14.68□□□□□ -0.06
CX3CL1P78423 CMTM3-210ENST00000565666 769 ntTSL 3 BASIC14.68□□□□□ -0.06
CX3CL1P78423 AQP4-AS1-204ENST00000582605 525 ntTSL 4 BASIC14.68□□□□□ -0.06
CX3CL1P78423 NUDT16L1-203ENST00000586252 922 ntTSL 3 BASIC14.68□□□□□ -0.06
CX3CL1P78423 LINC01023-201ENST00000606054 436 ntBASIC14.68□□□□□ -0.06
CX3CL1P78423 AC009477.2-201ENST00000635976 171 ntAPPRIS P1 BASIC14.68□□□□□ -0.06
CX3CL1P78423 NINL-201ENST00000278886 4969 ntAPPRIS P3 TSL 1 (best) BASIC14.68□□□□□ -0.06
CX3CL1P78423 MCOLN2-201ENST00000284027 1729 ntAPPRIS P1 TSL 5 BASIC14.68□□□□□ -0.06
CX3CL1P78423 FAM208A-209ENST00000493960 5600 ntAPPRIS P2 TSL 5 BASIC14.68□□□□□ -0.06
CX3CL1P78423 RHOB-201ENST00000272233 2372 ntAPPRIS P1 BASIC14.68□□□□□ -0.06
CX3CL1P78423 ATPAF1-214ENST00000576409 4158 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
CX3CL1P78423 EDNRA-206ENST00000511804 1569 ntTSL 2 BASIC14.68□□□□□ -0.06
CX3CL1P78423 PTDSS1-202ENST00000517309 5177 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
CX3CL1P78423 DENND6B-201ENST00000413817 4939 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
CX3CL1P78423 PHF1-201ENST00000374512 2224 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
CX3CL1P78423 CLN8-211ENST00000636934 1790 ntTSL 5 BASIC14.68□□□□□ -0.06
CX3CL1P78423 POLI-207ENST00000579434 2705 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
CX3CL1P78423 STRADB-202ENST00000392249 2190 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
CX3CL1P78423 IFFO1-202ENST00000356896 2680 ntTSL 5 BASIC14.67□□□□□ -0.06
CX3CL1P78423 NDN-201ENST00000331837 1931 ntAPPRIS P1 BASIC14.67□□□□□ -0.06
CX3CL1P78423 CTSD-212ENST00000637815 2003 ntAPPRIS ALT2 TSL 5 BASIC14.67□□□□□ -0.06
CX3CL1P78423 PRDM8-203ENST00000504452 3706 ntAPPRIS P1 TSL 5 BASIC14.67□□□□□ -0.06
CX3CL1P78423 COL4A2-201ENST00000360467 6281 ntAPPRIS P1 TSL 5 BASIC14.67□□□□□ -0.06
CX3CL1P78423 TMEM160-201ENST00000253047 663 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
Retrieved 100 of 98,524 protein–RNA pairs in 61.5 ms