Protein–RNA interactions for Protein: P41235

HNF4A, Hepatocyte nuclear factor 4-alpha, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HNF4AP41235 AMDHD2-203ENST00000413459 2049 ntTSL 2 BASIC17.69■□□□□ 0.42
HNF4AP41235 DHRS4L2-201ENST00000335125 1370 ntAPPRIS P2 TSL 1 (best) BASIC17.69■□□□□ 0.42
HNF4AP41235 EDEM1-204ENST00000445686 1363 ntTSL 2 BASIC17.69■□□□□ 0.42
HNF4AP41235 EIPR1-201ENST00000382125 1766 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
HNF4AP41235 RASA4B-201ENST00000306682 2589 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
HNF4AP41235 NCF1B-201ENST00000423083 1516 ntTSL 2 BASIC17.69■□□□□ 0.42
HNF4AP41235 DIAPH1-201ENST00000253811 5789 ntAPPRIS ALT2 TSL 5 BASIC17.69■□□□□ 0.42
HNF4AP41235 DIAPH1-202ENST00000389054 5795 ntAPPRIS P4 TSL 5 BASIC17.69■□□□□ 0.42
HNF4AP41235 DIAPH1-204ENST00000398557 5789 ntAPPRIS ALT2 TSL 5 BASIC17.69■□□□□ 0.42
HNF4AP41235 SSX2IP-210ENST00000605755 1933 ntTSL 2 BASIC17.69■□□□□ 0.42
HNF4AP41235 TBC1D20-201ENST00000354200 4466 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
HNF4AP41235 IL15-201ENST00000296545 2472 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
HNF4AP41235 SLC35G2-202ENST00000446465 2060 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
HNF4AP41235 AZU1-201ENST00000233997 908 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
HNF4AP41235 ICAM4-201ENST00000340992 1176 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
HNF4AP41235 CAPN10-203ENST00000352879 862 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
HNF4AP41235 GAD2-202ENST00000376248 680 ntTSL 5 BASIC17.69■□□□□ 0.42
HNF4AP41235 AC007563.2-201ENST00000447289 552 ntTSL 5 BASIC17.69■□□□□ 0.42
HNF4AP41235 FOSL1-203ENST00000531493 1200 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
HNF4AP41235 C14orf144-201ENST00000553757 537 ntTSL 4 BASIC17.69■□□□□ 0.42
HNF4AP41235 CRNDE-210ENST00000560912 459 ntTSL 5 BASIC17.69■□□□□ 0.42
HNF4AP41235 P4HB-223ENST00000576390 439 ntTSL 4 BASIC17.69■□□□□ 0.42
HNF4AP41235 PTGIR-204ENST00000596260 1009 ntTSL 2 BASIC17.69■□□□□ 0.42
HNF4AP41235 AL138966.2-201ENST00000621997 464 ntBASIC17.69■□□□□ 0.42
HNF4AP41235 BAZ1B-201ENST00000339594 6102 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
HNF4AP41235 PAQR4-202ENST00000318782 2793 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
HNF4AP41235 URI1-202ENST00000392271 3444 ntAPPRIS P3 TSL 1 (best) BASIC17.69■□□□□ 0.42
HNF4AP41235 PPM1G-201ENST00000344034 2311 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
HNF4AP41235 ICA1-208ENST00000407906 1615 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
HNF4AP41235 SPPL2C-201ENST00000329196 2238 ntAPPRIS P1 BASIC17.68■□□□□ 0.42
HNF4AP41235 EGFL6-202ENST00000380602 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
HNF4AP41235 DIAPH2-205ENST00000373061 4983 ntAPPRIS ALT2 TSL 5 BASIC17.68■□□□□ 0.42
HNF4AP41235 PTPA-206ENST00000358994 2664 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
HNF4AP41235 PKP3-201ENST00000331563 2809 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
HNF4AP41235 DDX51-202ENST00000397333 4718 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
HNF4AP41235 WDSUB1-203ENST00000392796 1812 ntAPPRIS P1 TSL 2 BASIC17.68■□□□□ 0.42
HNF4AP41235 GPATCH3-201ENST00000361720 2123 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
HNF4AP41235 TTC3-203ENST00000399010 2115 ntTSL 5 BASIC17.68■□□□□ 0.42
HNF4AP41235 CHTOP-201ENST00000368686 2250 ntTSL 2 BASIC17.68■□□□□ 0.42
HNF4AP41235 MGLL-204ENST00000434178 4941 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
HNF4AP41235 GALNT14-202ENST00000349752 2733 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
HNF4AP41235 LEMD2-214ENST00000614475 2883 ntAPPRIS P1 TSL 5 BASIC17.68■□□□□ 0.42
HNF4AP41235 ZNF419-201ENST00000221735 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
HNF4AP41235 OCIAD2-201ENST00000273860 636 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
HNF4AP41235 SCGB3A1-201ENST00000292641 521 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
HNF4AP41235 GTPBP2-202ENST00000307126 2933 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
HNF4AP41235 FGF8-201ENST00000320185 799 ntAPPRIS P4 TSL 1 (best) BASIC17.68■□□□□ 0.42
HNF4AP41235 CHRFAM7A-202ENST00000397827 2794 ntTSL 5 BASIC17.68■□□□□ 0.42
HNF4AP41235 AP000523.1-201ENST00000398242 1049 ntBASIC17.68■□□□□ 0.42
HNF4AP41235 EHMT1-211ENST00000482340 691 ntTSL 5 BASIC17.68■□□□□ 0.42
HNF4AP41235 PDCD6-206ENST00000507528 1088 ntAPPRIS ALT1 TSL 1 (best) BASIC17.68■□□□□ 0.42
HNF4AP41235 KRT18P21-201ENST00000515767 1272 ntBASIC17.68■□□□□ 0.42
HNF4AP41235 TK2-213ENST00000563369 882 ntTSL 5 BASIC17.68■□□□□ 0.42
HNF4AP41235 KLK7-206ENST00000597707 1054 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
HNF4AP41235 AC008687.8-201ENST00000599795 1748 ntAPPRIS P1 TSL 2 BASIC17.68■□□□□ 0.42
HNF4AP41235 AC010240.3-201ENST00000607688 395 ntBASIC17.68■□□□□ 0.42
HNF4AP41235 OCIAD2-210ENST00000620187 697 ntTSL 3 BASIC17.68■□□□□ 0.42
HNF4AP41235 AL023973.1-201ENST00000624619 620 ntBASIC17.68■□□□□ 0.42
HNF4AP41235 BANP-223ENST00000538234 2372 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
HNF4AP41235 PKD1P1-201ENST00000458669 6805 ntBASIC17.68■□□□□ 0.42
HNF4AP41235 ACSF2-201ENST00000300441 2235 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
HNF4AP41235 COL27A1-201ENST00000356083 7790 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
HNF4AP41235 MYOZ3-203ENST00000517768 1451 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
HNF4AP41235 MARK2-209ENST00000509502 2862 ntAPPRIS ALT2 TSL 2 BASIC17.68■□□□□ 0.42
HNF4AP41235 RSPO4-201ENST00000217260 2707 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
HNF4AP41235 TYMS-201ENST00000323224 1327 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
HNF4AP41235 LRRC25-201ENST00000339007 2415 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
HNF4AP41235 ASXL1-202ENST00000375687 7031 ntAPPRIS P2 TSL 5 BASIC17.68■□□□□ 0.42
HNF4AP41235 CTSB-202ENST00000353047 3875 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
HNF4AP41235 SYT15-202ENST00000374323 6428 ntTSL 2 BASIC17.68■□□□□ 0.42
HNF4AP41235 RAP1GDS1-201ENST00000264572 1686 ntTSL 5 BASIC17.67■□□□□ 0.42
HNF4AP41235 SNX11-201ENST00000359238 2315 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
HNF4AP41235 SAMD11-212ENST00000617307 2314 ntAPPRIS ALT2 TSL 5 BASIC17.67■□□□□ 0.42
HNF4AP41235 ASL-204ENST00000395331 1538 ntTSL 5 BASIC17.67■□□□□ 0.42
HNF4AP41235 BICRA-201ENST00000396720 5739 ntAPPRIS P2 TSL 5 BASIC17.67■□□□□ 0.42
HNF4AP41235 EIF2B5-201ENST00000273783 2655 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
HNF4AP41235 ADORA1-202ENST00000337894 2919 ntAPPRIS P1 TSL 2 BASIC17.67■□□□□ 0.42
HNF4AP41235 SLC39A3-202ENST00000455372 2940 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
HNF4AP41235 JPH2-201ENST00000342272 1923 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
HNF4AP41235 CD7-201ENST00000312648 1281 ntAPPRIS P2 TSL 1 (best) BASIC17.67■□□□□ 0.42
HNF4AP41235 NDUFA13-201ENST00000428459 576 ntTSL 2 BASIC17.67■□□□□ 0.42
HNF4AP41235 NDUFV2-207ENST00000497577 868 ntTSL 2 BASIC17.67■□□□□ 0.42
HNF4AP41235 MTHFS-202ENST00000559722 948 ntTSL 2 BASIC17.67■□□□□ 0.42
HNF4AP41235 AC140113.3-201ENST00000605663 199 ntBASIC17.67■□□□□ 0.42
HNF4AP41235 RNF187-203ENST00000639044 708 ntAPPRIS P2 TSL 1 (best) BASIC17.67■□□□□ 0.42
HNF4AP41235 SMAD4-201ENST00000342988 8769 ntAPPRIS P1 TSL 5 BASIC17.67■□□□□ 0.42
HNF4AP41235 AC007743.1-203ENST00000447423 1623 ntTSL 2 BASIC17.67■□□□□ 0.42
HNF4AP41235 CASKIN2-205ENST00000581870 1612 ntTSL 2 BASIC17.67■□□□□ 0.42
HNF4AP41235 NAP1L5-201ENST00000323061 2321 ntAPPRIS P1 BASIC17.67■□□□□ 0.42
HNF4AP41235 KRT6A-201ENST00000330722 2310 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
HNF4AP41235 PNMA6E-201ENST00000445091 2192 ntAPPRIS P1 TSL 2 BASIC17.67■□□□□ 0.42
HNF4AP41235 H1FNT-201ENST00000335017 1300 ntAPPRIS P1 BASIC17.67■□□□□ 0.42
HNF4AP41235 SGSM2-201ENST00000268989 4863 ntAPPRIS P3 TSL 1 (best) BASIC17.67■□□□□ 0.42
HNF4AP41235 FBXO44-201ENST00000251546 1896 ntTSL 2 BASIC17.67■□□□□ 0.42
HNF4AP41235 HAUS8-202ENST00000448593 1545 ntAPPRIS ALT2 TSL 5 BASIC17.67■□□□□ 0.42
HNF4AP41235 MRAS-204ENST00000464896 1534 ntTSL 2 BASIC17.67■□□□□ 0.42
HNF4AP41235 KCNC4-204ENST00000438661 2953 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
HNF4AP41235 C6orf132-201ENST00000341865 6210 ntAPPRIS P2 TSL 5 BASIC17.67■□□□□ 0.42
HNF4AP41235 TAX1BP3-201ENST00000225525 1377 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
HNF4AP41235 PCCA-202ENST00000376285 2494 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 37.7 ms