Protein–RNA interactions for Protein: P22223

CDH3, Cadherin-3, humanhuman

Predictions only

Length 829 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3P22223 NUAK1-201ENST00000261402 6828 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
CDH3P22223 TRIM7-205ENST00000422067 1954 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
CDH3P22223 UNG-202ENST00000336865 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC17.86■□□□□ 0.45
CDH3P22223 ICA1-201ENST00000265577 2309 ntAPPRIS ALT1 TSL 5 BASIC17.86■□□□□ 0.45
CDH3P22223 LTBP4-203ENST00000308370 4948 ntAPPRIS P4 TSL 1 (best) BASIC17.86■□□□□ 0.45
CDH3P22223 IGLL1-201ENST00000249053 716 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
CDH3P22223 MRPL24-202ENST00000368211 883 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
CDH3P22223 PCED1CP-201ENST00000419887 785 ntBASIC17.86■□□□□ 0.45
CDH3P22223 HELT-202ENST00000505610 846 ntAPPRIS ALT1 TSL 1 (best) BASIC17.86■□□□□ 0.45
CDH3P22223 FAM86EP-206ENST00000510506 987 ntBASIC17.86■□□□□ 0.45
CDH3P22223 LY6E-213ENST00000522528 606 ntTSL 3 BASIC17.86■□□□□ 0.45
CDH3P22223 AC010240.3-201ENST00000607688 395 ntBASIC17.86■□□□□ 0.45
CDH3P22223 AP000550.4-202ENST00000639755 178 ntBASIC17.86■□□□□ 0.45
CDH3P22223 CPT2-207ENST00000636867 2643 ntTSL 5 BASIC17.86■□□□□ 0.45
CDH3P22223 IFFO1-204ENST00000396840 2677 ntAPPRIS ALT1 TSL 5 BASIC17.86■□□□□ 0.45
CDH3P22223 KCNH1-214ENST00000640566 1365 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
CDH3P22223 TMC6-202ENST00000322914 2786 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
CDH3P22223 FGFR1-206ENST00000397091 5702 ntAPPRIS ALT1 TSL 1 (best) BASIC17.86■□□□□ 0.45
CDH3P22223 NFKB2-201ENST00000189444 3011 ntAPPRIS ALT1 TSL 1 (best) BASIC17.86■□□□□ 0.45
CDH3P22223 MRAS-204ENST00000464896 1534 ntTSL 2 BASIC17.86■□□□□ 0.45
CDH3P22223 ZNF655-202ENST00000320583 1601 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
CDH3P22223 RNF167-205ENST00000571816 1728 ntAPPRIS P3 TSL 5 BASIC17.86■□□□□ 0.45
CDH3P22223 PLCG1-202ENST00000373271 7395 ntAPPRIS ALT1 TSL 1 (best) BASIC17.86■□□□□ 0.45
CDH3P22223 CALHM2-201ENST00000260743 1859 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
CDH3P22223 RNF135-201ENST00000324689 1905 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
CDH3P22223 COPS7A-204ENST00000534947 2034 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
CDH3P22223 CCT7-215ENST00000539919 2031 ntTSL 2 BASIC17.86■□□□□ 0.45
CDH3P22223 GRM2-204ENST00000442933 2064 ntTSL 5 BASIC17.86■□□□□ 0.45
CDH3P22223 PLEKHA2-206ENST00000521746 2127 ntTSL 5 BASIC17.86■□□□□ 0.45
CDH3P22223 ZNF394-201ENST00000337673 2179 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
CDH3P22223 ERCC2-203ENST00000391944 2334 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
CDH3P22223 HBEGF-201ENST00000230990 2386 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
CDH3P22223 ETNK2-202ENST00000367201 2431 ntAPPRIS ALT2 TSL 2 BASIC17.86■□□□□ 0.45
CDH3P22223 DAG1-220ENST00000539901 5665 ntAPPRIS P1 TSL 5 BASIC17.85■□□□□ 0.45
CDH3P22223 RFTN1-201ENST00000334133 2982 ntAPPRIS P2 TSL 1 (best) BASIC17.85■□□□□ 0.45
CDH3P22223 SMARCC2-201ENST00000267064 4076 ntAPPRIS P4 TSL 1 (best) BASIC17.85■□□□□ 0.45
CDH3P22223 IGSF9B-206ENST00000533871 5050 ntAPPRIS P2 TSL 5 BASIC17.85■□□□□ 0.45
CDH3P22223 HOXB1-201ENST00000239174 2020 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
CDH3P22223 TNFSF9-201ENST00000245817 1665 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
CDH3P22223 FBLN1-201ENST00000262722 2251 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
CDH3P22223 RNF113B-201ENST00000267291 1376 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
CDH3P22223 BSCL2-201ENST00000278893 1364 ntAPPRIS ALT2 TSL 2 BASIC17.85■□□□□ 0.45
CDH3P22223 AP1AR-202ENST00000309703 2337 ntAPPRIS ALT1 TSL 1 (best) BASIC17.85■□□□□ 0.45
CDH3P22223 TYMSOS-201ENST00000323813 844 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
CDH3P22223 PCED1A-201ENST00000356872 1706 ntTSL 2 BASIC17.85■□□□□ 0.45
CDH3P22223 BORCS6-201ENST00000389017 2575 ntAPPRIS P1 BASIC17.85■□□□□ 0.45
CDH3P22223 AANAT-202ENST00000392492 1005 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
CDH3P22223 SLC5A10-203ENST00000395645 2069 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
CDH3P22223 MTMR9LP-203ENST00000426597 1545 ntBASIC17.85■□□□□ 0.45
CDH3P22223 AC092597.1-201ENST00000487352 616 ntBASIC17.85■□□□□ 0.45
CDH3P22223 ACVR1B-205ENST00000541224 1791 ntTSL 2 BASIC17.85■□□□□ 0.45
CDH3P22223 GUCA1A-205ENST00000541991 1921 ntTSL 5 BASIC17.85■□□□□ 0.45
CDH3P22223 C14orf144-201ENST00000553757 537 ntTSL 4 BASIC17.85■□□□□ 0.45
CDH3P22223 C1QTNF1-209ENST00000581774 1368 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
CDH3P22223 NFYC-AS1-201ENST00000606277 1687 ntBASIC17.85■□□□□ 0.45
CDH3P22223 INTS11-249ENST00000618806 1523 ntTSL 2 BASIC17.85■□□□□ 0.45
CDH3P22223 HYMAI.1-201ENST00000620949 238 ntBASIC17.85■□□□□ 0.45
CDH3P22223 TRA2A-212ENST00000621813 1931 ntAPPRIS ALT2 TSL 2 BASIC17.85■□□□□ 0.45
CDH3P22223 PRDM14-201ENST00000276594 2344 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
CDH3P22223 FXYD6-211ENST00000539526 2132 ntAPPRIS P2 TSL 1 (best) BASIC17.84■□□□□ 0.45
CDH3P22223 ANKRD65-201ENST00000427211 1976 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
CDH3P22223 AC013268.5-201ENST00000454928 1959 ntTSL 2 BASIC17.84■□□□□ 0.45
CDH3P22223 GCOM1-202ENST00000380569 1846 ntAPPRIS P3 TSL 2 BASIC17.84■□□□□ 0.45
CDH3P22223 GTF2H4-201ENST00000259895 1735 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
CDH3P22223 EDNRA-206ENST00000511804 1569 ntTSL 2 BASIC17.84■□□□□ 0.45
CDH3P22223 TMEM106C-202ENST00000429772 1515 ntAPPRIS P1 TSL 2 BASIC17.84■□□□□ 0.45
CDH3P22223 CCDC157-201ENST00000338306 3001 ntAPPRIS P3 TSL 5 BASIC17.84■□□□□ 0.45
CDH3P22223 CHRFAM7A-202ENST00000397827 2794 ntTSL 5 BASIC17.84■□□□□ 0.45
CDH3P22223 IER3-202ENST00000376377 1350 ntBASIC17.84■□□□□ 0.45
CDH3P22223 PDE8A-202ENST00000339708 2663 ntAPPRIS ALT2 TSL 1 (best) BASIC17.84■□□□□ 0.45
CDH3P22223 MICU3-201ENST00000318063 3992 ntAPPRIS P2 TSL 1 (best) BASIC17.84■□□□□ 0.45
CDH3P22223 HBZP1-201ENST00000354915 429 ntBASIC17.84■□□□□ 0.45
CDH3P22223 AC140504.1-202ENST00000568222 652 ntTSL 5 BASIC17.84■□□□□ 0.45
CDH3P22223 ZNF575-205ENST00000601282 1086 ntAPPRIS P1 TSL 2 BASIC17.84■□□□□ 0.45
CDH3P22223 IFNL4-202ENST00000616270 1132 ntAPPRIS ALT2 TSL 1 (best) BASIC17.84■□□□□ 0.45
CDH3P22223 ILKAP-212ENST00000622223 1088 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
CDH3P22223 AC092902.2-222ENST00000626312 568 ntTSL 5 BASIC17.84■□□□□ 0.45
CDH3P22223 CLN6-214ENST00000636314 442 ntTSL 3 BASIC17.84■□□□□ 0.45
CDH3P22223 KCNK3-201ENST00000302909 6162 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
CDH3P22223 SLCO6A1-201ENST00000379807 2437 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
CDH3P22223 EGFR-202ENST00000342916 2239 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
CDH3P22223 NLE1-203ENST00000586869 5286 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
CDH3P22223 CPEB2-202ENST00000345451 2013 ntAPPRIS ALT2 TSL 1 (best) BASIC17.84■□□□□ 0.45
CDH3P22223 GUCY1A2-201ENST00000282249 3047 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
CDH3P22223 SARAF-214ENST00000545648 1976 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
CDH3P22223 PSAP-205ENST00000610929 1969 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
CDH3P22223 OPN5-204ENST00000489301 1931 ntAPPRIS ALT2 TSL 5 BASIC17.84■□□□□ 0.45
CDH3P22223 NR1H2-210ENST00000598168 1915 ntAPPRIS ALT2 TSL 5 BASIC17.84■□□□□ 0.45
CDH3P22223 NR4A2-204ENST00000409572 2878 ntAPPRIS P1 TSL 5 BASIC17.84■□□□□ 0.45
CDH3P22223 STXBP2-202ENST00000414284 1859 ntAPPRIS ALT1 TSL 1 (best) BASIC17.84■□□□□ 0.45
CDH3P22223 PALM-201ENST00000264560 2755 ntAPPRIS ALT2 TSL 4 BASIC17.84■□□□□ 0.45
CDH3P22223 ANKMY1-209ENST00000405523 1827 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
CDH3P22223 ZNF623-203ENST00000526926 2612 ntAPPRIS ALT2 TSL 2 BASIC17.84■□□□□ 0.45
CDH3P22223 AGO3-202ENST00000324350 1726 ntTSL 2 BASIC17.84■□□□□ 0.45
CDH3P22223 CAB39-202ENST00000409788 1626 ntAPPRIS P1 TSL 2 BASIC17.83■□□□□ 0.45
CDH3P22223 AL365232.1-201ENST00000423730 1636 ntAPPRIS P1 TSL 5 BASIC17.83■□□□□ 0.45
CDH3P22223 MFSD1-201ENST00000264266 1594 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
CDH3P22223 COMP-202ENST00000425807 2292 ntTSL 2 BASIC17.83■□□□□ 0.45
CDH3P22223 IL17RC-215ENST00000455057 2244 ntAPPRIS ALT2 TSL 1 (best) BASIC17.83■□□□□ 0.45
CDH3P22223 AC135050.7-201ENST00000624508 2218 ntBASIC17.83■□□□□ 0.45
Retrieved 100 of 98,524 protein–RNA pairs in 43.6 ms