Protein–RNA interactions for Protein: P02458

COL2A1, Collagen alpha-1(II) chain, humanhuman

Predicted RBP Predictions only

Length 1,487 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL2A1P02458 KRT18P58-201ENST00000527480 1120 ntBASIC21.19■□□□□ 0.98
COL2A1P02458 MTUS2-205ENST00000542829 1165 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
COL2A1P02458 AC126763.1-201ENST00000552015 2118 ntBASIC21.19■□□□□ 0.98
COL2A1P02458 AC010522.1-205ENST00000598031 606 ntAPPRIS P1 TSL 3 BASIC21.19■□□□□ 0.98
COL2A1P02458 PDP1-208ENST00000520728 2554 ntAPPRIS P3 TSL 1 (best) BASIC21.19■□□□□ 0.98
COL2A1P02458 C11orf95-202ENST00000433688 5716 ntAPPRIS P1 TSL 5 BASIC21.19■□□□□ 0.98
COL2A1P02458 RBPMS-203ENST00000339877 1341 ntAPPRIS ALT1 TSL 1 (best) BASIC21.19■□□□□ 0.98
COL2A1P02458 MMP24-201ENST00000246186 4414 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
COL2A1P02458 SLC4A3-203ENST00000358055 4454 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
COL2A1P02458 SYT15-201ENST00000374321 1369 ntAPPRIS P4 TSL 2 BASIC21.18■□□□□ 0.98
COL2A1P02458 CSK-202ENST00000439220 1900 ntAPPRIS P1 TSL 2 BASIC21.18■□□□□ 0.98
COL2A1P02458 PDXK-219ENST00000621478 1967 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
COL2A1P02458 ZNF114-206ENST00000600687 1742 ntAPPRIS P1 TSL 5 BASIC21.18■□□□□ 0.98
COL2A1P02458 PKMYT1-203ENST00000431515 2308 ntTSL 2 BASIC21.18■□□□□ 0.98
COL2A1P02458 MAGEA3-203ENST00000598245 1762 ntAPPRIS P1 TSL 2 BASIC21.18■□□□□ 0.98
COL2A1P02458 MAGEA6-204ENST00000616035 1762 ntAPPRIS P1 TSL 5 BASIC21.18■□□□□ 0.98
COL2A1P02458 SH3BP5-203ENST00000408919 1880 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
COL2A1P02458 TM2D1-201ENST00000294613 1250 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
COL2A1P02458 ISCA2-201ENST00000298818 851 ntTSL 5 BASIC21.18■□□□□ 0.98
COL2A1P02458 TM2D1-204ENST00000371180 1248 ntTSL 5 BASIC21.18■□□□□ 0.98
COL2A1P02458 DMKN-206ENST00000418261 1257 ntAPPRIS ALT2 TSL 1 (best) BASIC21.18■□□□□ 0.98
COL2A1P02458 AC139887.2-202ENST00000507446 534 ntTSL 4 BASIC21.18■□□□□ 0.98
COL2A1P02458 DUTP2-201ENST00000519164 463 ntBASIC21.18■□□□□ 0.98
COL2A1P02458 AC243965.1-201ENST00000557595 781 ntTSL 3 BASIC21.18■□□□□ 0.98
COL2A1P02458 HEXA-210ENST00000567213 1000 ntTSL 3 BASIC21.18■□□□□ 0.98
COL2A1P02458 AC008105.3-202ENST00000585471 1077 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
COL2A1P02458 TM2D1-212ENST00000606498 969 ntAPPRIS P1 TSL 5 BASIC21.18■□□□□ 0.98
COL2A1P02458 AC117500.6-201ENST00000624871 588 ntBASIC21.18■□□□□ 0.98
COL2A1P02458 ZIC3-202ENST00000370606 1968 ntTSL 5 BASIC21.18■□□□□ 0.98
COL2A1P02458 GTPBP8-203ENST00000383678 1360 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
COL2A1P02458 RPL13P5-202ENST00000412023 1438 ntTSL 2 BASIC21.18■□□□□ 0.98
COL2A1P02458 DMRT3-201ENST00000190165 2183 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
COL2A1P02458 THOP1-205ENST00000586677 1872 ntTSL 2 BASIC21.17■□□□□ 0.98
COL2A1P02458 PPP1R7-202ENST00000272983 1954 ntTSL 2 BASIC21.17■□□□□ 0.98
COL2A1P02458 AOC3-207ENST00000617500 2392 ntTSL 4 BASIC21.17■□□□□ 0.98
COL2A1P02458 CAMKK1-202ENST00000348335 3563 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
COL2A1P02458 UBE2J2-204ENST00000400929 1057 ntTSL 3 BASIC21.17■□□□□ 0.98
COL2A1P02458 ZFAND2B-207ENST00000409412 569 ntTSL 2 BASIC21.17■□□□□ 0.98
COL2A1P02458 RAB17-203ENST00000409576 466 ntTSL 3 BASIC21.17■□□□□ 0.98
COL2A1P02458 SRP19-202ENST00000445150 833 ntTSL 2 BASIC21.17■□□□□ 0.98
COL2A1P02458 KLK12-203ENST00000525263 1077 ntAPPRIS ALT2 TSL 1 (best) BASIC21.17■□□□□ 0.98
COL2A1P02458 AC012615.5-201ENST00000592720 581 ntTSL 4 BASIC21.17■□□□□ 0.98
COL2A1P02458 AC139530.3-201ENST00000620344 690 ntBASIC21.17■□□□□ 0.98
COL2A1P02458 IQSEC2-210ENST00000639161 936 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
COL2A1P02458 SMIM10L2B-201ENST00000433425 2737 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
COL2A1P02458 ZNF12-201ENST00000342651 2921 ntAPPRIS ALT2 TSL 2 BASIC21.17■□□□□ 0.98
COL2A1P02458 CYP2D7-208ENST00000614967 1504 ntTSL 5 BASIC21.17■□□□□ 0.98
COL2A1P02458 HES1-201ENST00000232424 1578 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
COL2A1P02458 AC010460.3-201ENST00000511359 1579 ntBASIC21.17■□□□□ 0.98
COL2A1P02458 AL355315.1-201ENST00000370649 1848 ntAPPRIS P1 TSL 2 BASIC21.17■□□□□ 0.98
COL2A1P02458 GPANK1-204ENST00000375900 1814 ntAPPRIS P1 TSL 2 BASIC21.17■□□□□ 0.98
COL2A1P02458 CACNB3-202ENST00000536187 1872 ntTSL 2 BASIC21.17■□□□□ 0.98
COL2A1P02458 DUOXA1-201ENST00000267803 1996 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
COL2A1P02458 ANO8-201ENST00000159087 4152 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
COL2A1P02458 RPS12-201ENST00000230050 631 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
COL2A1P02458 ODC1-201ENST00000234111 2653 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
COL2A1P02458 TRMT44-205ENST00000513449 1666 ntAPPRIS ALT2 TSL 1 (best) BASIC21.16■□□□□ 0.98
COL2A1P02458 C12orf76-202ENST00000546627 461 ntTSL 4 BASIC21.16■□□□□ 0.98
COL2A1P02458 PSMA6-216ENST00000627895 484 ntTSL 5 BASIC21.16■□□□□ 0.98
COL2A1P02458 PHGDH-209ENST00000641074 1780 ntBASIC21.16■□□□□ 0.98
COL2A1P02458 FMNL2-201ENST00000288670 5575 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
COL2A1P02458 NYX-202ENST00000378220 2297 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
COL2A1P02458 SIKE1-201ENST00000060969 2190 ntAPPRIS P3 TSL 1 (best) BASIC21.16■□□□□ 0.98
COL2A1P02458 POLD3-203ENST00000527458 2122 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
COL2A1P02458 NRN1-201ENST00000244766 1624 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
COL2A1P02458 CCDC88C-203ENST00000389856 1641 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
COL2A1P02458 AC079776.2-201ENST00000641154 1609 ntBASIC21.15■□□□□ 0.98
COL2A1P02458 IFNL4-204ENST00000634967 1493 ntAPPRIS ALT2 TSL 1 (best) BASIC21.15■□□□□ 0.98
COL2A1P02458 SLC6A11-202ENST00000454147 2794 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
COL2A1P02458 FOXP3-201ENST00000376197 1326 ntTSL 2 BASIC21.15■□□□□ 0.98
COL2A1P02458 GOSR2-201ENST00000225567 1245 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
COL2A1P02458 RPA2-202ENST00000373909 1162 ntTSL 3 BASIC21.15■□□□□ 0.98
COL2A1P02458 AP001107.6-201ENST00000526655 516 ntTSL 3 BASIC21.15■□□□□ 0.98
COL2A1P02458 AC069287.3-201ENST00000527297 589 ntTSL 5 BASIC21.15■□□□□ 0.98
COL2A1P02458 CD63-204ENST00000546939 779 ntTSL 3 BASIC21.15■□□□□ 0.98
COL2A1P02458 AC133919.2-201ENST00000565965 589 ntTSL 4 BASIC21.15■□□□□ 0.98
COL2A1P02458 AC127496.4-201ENST00000571591 549 ntTSL 4 BASIC21.15■□□□□ 0.98
COL2A1P02458 GPX4-212ENST00000616066 924 ntAPPRIS ALT1 TSL 5 BASIC21.15■□□□□ 0.98
COL2A1P02458 MED16-213ENST00000616387 1078 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
COL2A1P02458 LCE1E-203ENST00000619588 267 ntAPPRIS ALT2 TSL 5 BASIC21.15■□□□□ 0.98
COL2A1P02458 AC008735.5-201ENST00000623544 497 ntBASIC21.15■□□□□ 0.98
COL2A1P02458 PRODH-215ENST00000610940 2405 ntAPPRIS P3 TSL 1 (best) BASIC21.15■□□□□ 0.98
COL2A1P02458 ATIC-205ENST00000435675 2275 ntTSL 2 BASIC21.15■□□□□ 0.98
COL2A1P02458 HSD3B7-202ENST00000297679 2172 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
COL2A1P02458 C11orf58-201ENST00000228136 2049 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
COL2A1P02458 DNAAF4-202ENST00000348518 1897 ntAPPRIS P1 TSL 5 BASIC21.15■□□□□ 0.98
COL2A1P02458 MEN1-208ENST00000394374 3155 ntAPPRIS P3 TSL 5 BASIC21.15■□□□□ 0.98
COL2A1P02458 SPAG16-204ENST00000413312 2258 ntTSL 5 BASIC21.15■□□□□ 0.98
COL2A1P02458 AP001476.1-201ENST00000451618 2198 ntTSL 2 BASIC21.15■□□□□ 0.98
COL2A1P02458 CDK18-217ENST00000506784 2143 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
COL2A1P02458 NEIL2-202ENST00000403422 2016 ntTSL 2 BASIC21.14■□□□□ 0.98
COL2A1P02458 USP12-201ENST00000282344 4511 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
COL2A1P02458 RPS2P28-201ENST00000314255 741 ntBASIC21.14■□□□□ 0.98
COL2A1P02458 ADIPOR1-202ENST00000367254 1116 ntTSL 1 (best) BASIC21.14■□□□□ 0.98
COL2A1P02458 MRPS18A-201ENST00000372116 785 ntTSL 2 BASIC21.14■□□□□ 0.98
COL2A1P02458 CSF3-203ENST00000394148 622 ntTSL 3 BASIC21.14■□□□□ 0.98
COL2A1P02458 CLDN14-205ENST00000399139 1231 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
COL2A1P02458 RPS2P1-201ENST00000434010 821 ntBASIC21.14■□□□□ 0.98
COL2A1P02458 ANKRD13D-218ENST00000515828 1111 ntTSL 1 (best) BASIC21.14■□□□□ 0.98
COL2A1P02458 OR7E14P-202ENST00000530490 1290 ntBASIC21.14■□□□□ 0.98
Retrieved 100 of 98,524 protein–RNA pairs in 80.8 ms