Protein–RNA interactions for Protein: O95484

CLDN9, Claudin-9, humanhuman

Predictions only

Length 217 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN9O95484 NUDT16L1-201ENST00000304301 1349 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
CLDN9O95484 SDC2-202ENST00000518385 1583 ntTSL 5 BASIC17.65■□□□□ 0.42
CLDN9O95484 SLC35G2-202ENST00000446465 2060 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
CLDN9O95484 MZF1-206ENST00000599369 2587 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
CLDN9O95484 TYRO3-201ENST00000263798 8207 ntAPPRIS P3 TSL 1 (best) BASIC17.65■□□□□ 0.42
CLDN9O95484 FAM213B-205ENST00000444521 2827 ntAPPRIS ALT2 TSL 2 BASIC17.65■□□□□ 0.42
CLDN9O95484 SOGA3-203ENST00000525778 4077 ntAPPRIS P1 TSL 5 BASIC17.65■□□□□ 0.42
CLDN9O95484 ANKRD13B-209ENST00000614878 2670 ntAPPRIS P1 TSL 5 BASIC17.65■□□□□ 0.42
CLDN9O95484 LETM1P2-201ENST00000597330 2178 ntBASIC17.64■□□□□ 0.42
CLDN9O95484 PLBD2-201ENST00000280800 4800 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.42
CLDN9O95484 AJUBA-202ENST00000361265 2569 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
CLDN9O95484 IL17RC-206ENST00000416074 2342 ntAPPRIS ALT2 TSL 1 (best) BASIC17.64■□□□□ 0.41
CLDN9O95484 ENTPD2-202ENST00000355097 2095 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
CLDN9O95484 AC120049.1-201ENST00000592638 2065 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
CLDN9O95484 SPDYE2-201ENST00000341656 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC17.64■□□□□ 0.41
CLDN9O95484 RABL2A-202ENST00000393165 1118 ntAPPRIS ALT2 TSL 1 (best) BASIC17.64■□□□□ 0.41
CLDN9O95484 COL11A2-204ENST00000395194 1194 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
CLDN9O95484 ROMO1-205ENST00000397416 288 ntAPPRIS P1 TSL 3 BASIC17.64■□□□□ 0.41
CLDN9O95484 RNF144A-AS1-205ENST00000439208 757 ntTSL 3 BASIC17.64■□□□□ 0.41
CLDN9O95484 SPDYE2B-202ENST00000455020 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC17.64■□□□□ 0.41
CLDN9O95484 SEC1P-202ENST00000473944 940 ntBASIC17.64■□□□□ 0.41
CLDN9O95484 DCTN3-209ENST00000477738 713 ntTSL 3 BASIC17.64■□□□□ 0.41
CLDN9O95484 LINC01024-205ENST00000521563 939 ntTSL 3 BASIC17.64■□□□□ 0.41
CLDN9O95484 ANK1-211ENST00000522231 1060 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
CLDN9O95484 ANK1-212ENST00000522543 1160 ntTSL 2 BASIC17.64■□□□□ 0.41
CLDN9O95484 MFGE8-203ENST00000542878 1172 ntTSL 2 BASIC17.64■□□□□ 0.41
CLDN9O95484 AC015712.4-203ENST00000559673 630 ntTSL 3 BASIC17.64■□□□□ 0.41
CLDN9O95484 SLC9A3R2-208ENST00000566198 1199 ntTSL 2 BASIC17.64■□□□□ 0.41
CLDN9O95484 NEK4P2-201ENST00000580004 1012 ntBASIC17.64■□□□□ 0.41
CLDN9O95484 AC024243.1-201ENST00000609234 778 ntBASIC17.64■□□□□ 0.41
CLDN9O95484 CLN6-221ENST00000637494 765 ntTSL 5 BASIC17.64■□□□□ 0.41
CLDN9O95484 MOAP1-201ENST00000298894 2441 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
CLDN9O95484 PANX1-201ENST00000227638 2769 ntAPPRIS P2 TSL 1 (best) BASIC17.64■□□□□ 0.41
CLDN9O95484 IRF3-203ENST00000377139 1613 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
CLDN9O95484 AC093010.1-201ENST00000473625 1624 ntBASIC17.64■□□□□ 0.41
CLDN9O95484 CERCAM-202ENST00000372842 5201 ntAPPRIS ALT2 TSL 5 BASIC17.64■□□□□ 0.41
CLDN9O95484 KIAA1522-202ENST00000373480 5294 ntAPPRIS ALT2 TSL 1 (best) BASIC17.64■□□□□ 0.41
CLDN9O95484 KIAA1522-203ENST00000373481 5293 ntAPPRIS ALT2 TSL 2 BASIC17.64■□□□□ 0.41
CLDN9O95484 THUMPD2-204ENST00000505747 1970 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
CLDN9O95484 C21orf59-201ENST00000290155 1692 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
CLDN9O95484 TAX1BP3-201ENST00000225525 1377 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
CLDN9O95484 LINC01568-207ENST00000641790 1380 ntBASIC17.64■□□□□ 0.41
CLDN9O95484 REEP4-201ENST00000306306 1710 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
CLDN9O95484 ALDH4A1-201ENST00000290597 2124 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
CLDN9O95484 DAPK2-205ENST00000558069 1473 ntTSL 5 BASIC17.63■□□□□ 0.41
CLDN9O95484 ACSM2B-208ENST00000565322 1834 ntTSL 2 BASIC17.63■□□□□ 0.41
CLDN9O95484 BOD1L2-201ENST00000585477 3239 ntAPPRIS P1 BASIC17.63■□□□□ 0.41
CLDN9O95484 AL024508.2-201ENST00000607749 1894 ntBASIC17.63■□□□□ 0.41
CLDN9O95484 CHTF8-203ENST00000448552 2903 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
CLDN9O95484 AP000997.3-201ENST00000623333 2250 ntBASIC17.63■□□□□ 0.41
CLDN9O95484 SKIDA1-202ENST00000449193 6598 ntAPPRIS P2 TSL 3 BASIC17.63■□□□□ 0.41
CLDN9O95484 PLD3-205ENST00000409419 1966 ntAPPRIS P1 TSL 5 BASIC17.63■□□□□ 0.41
CLDN9O95484 ICA1-208ENST00000407906 1615 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
CLDN9O95484 CASKIN2-205ENST00000581870 1612 ntTSL 2 BASIC17.63■□□□□ 0.41
CLDN9O95484 PTP4A3-202ENST00000349124 2710 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
CLDN9O95484 DGCR6L-201ENST00000248879 1154 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
CLDN9O95484 FAM212A-201ENST00000333323 1040 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
CLDN9O95484 KIRREL3-AS3-201ENST00000404882 831 ntBASIC17.63■□□□□ 0.41
CLDN9O95484 HYAL3-203ENST00000415204 959 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
CLDN9O95484 AL390719.1-201ENST00000427998 977 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
CLDN9O95484 C7orf49-209ENST00000483029 596 ntTSL 2 BASIC17.63■□□□□ 0.41
CLDN9O95484 DNAJB6-218ENST00000634080 1005 ntTSL 2 BASIC17.63■□□□□ 0.41
CLDN9O95484 RAP1GDS1-201ENST00000264572 1686 ntTSL 5 BASIC17.63■□□□□ 0.41
CLDN9O95484 RNFT2-204ENST00000407967 2415 ntTSL 5 BASIC17.63■□□□□ 0.41
CLDN9O95484 SMPD1-201ENST00000342245 2452 ntAPPRIS ALT1 TSL 1 (best) BASIC17.63■□□□□ 0.41
CLDN9O95484 TMEM128-201ENST00000254742 1737 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
CLDN9O95484 GTF2H4-201ENST00000259895 1735 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
CLDN9O95484 PTPA-223ENST00000452489 2526 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
CLDN9O95484 ZNF746-202ENST00000458143 3797 ntAPPRIS ALT2 TSL 2 BASIC17.63■□□□□ 0.41
CLDN9O95484 MYBPH-201ENST00000255416 1805 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
CLDN9O95484 ZNF446-207ENST00000610298 1869 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
CLDN9O95484 NDUFA10-214ENST00000620965 1489 ntAPPRIS ALT1 TSL 5 BASIC17.63■□□□□ 0.41
CLDN9O95484 HIC1-202ENST00000399849 3156 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
CLDN9O95484 RGMB-AS1-201ENST00000498871 1903 ntTSL 2 BASIC17.62■□□□□ 0.41
CLDN9O95484 HR-201ENST00000312841 5351 ntTSL 5 BASIC17.62■□□□□ 0.41
CLDN9O95484 FBXW11-202ENST00000296933 4539 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
CLDN9O95484 MATN4-205ENST00000537548 1991 ntAPPRIS ALT2 TSL 5 BASIC17.62■□□□□ 0.41
CLDN9O95484 ITGA6-201ENST00000264107 5618 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
CLDN9O95484 WIPI1-202ENST00000546360 1575 ntTSL 2 BASIC17.62■□□□□ 0.41
CLDN9O95484 DUS1L-201ENST00000306796 2068 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
CLDN9O95484 MAPKAP1-205ENST00000373503 3045 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
CLDN9O95484 NR4A1-203ENST00000394824 2639 ntAPPRIS P1 TSL 5 BASIC17.62■□□□□ 0.41
CLDN9O95484 B3GALT5-206ENST00000615480 2617 ntAPPRIS P1 TSL 2 BASIC17.62■□□□□ 0.41
CLDN9O95484 OPRD1-201ENST00000234961 9345 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
CLDN9O95484 FZD1-201ENST00000287934 6963 ntAPPRIS P1 BASIC17.62■□□□□ 0.41
CLDN9O95484 FAM222A-201ENST00000358906 2731 ntAPPRIS P1 TSL 5 BASIC17.62■□□□□ 0.41
CLDN9O95484 NCOA6-207ENST00000616167 3271 ntAPPRIS ALT2 TSL 5 BASIC17.62■□□□□ 0.41
CLDN9O95484 PPT2-247ENST00000375143 1754 ntAPPRIS ALT2 TSL 5 BASIC17.62■□□□□ 0.41
CLDN9O95484 MPC2-201ENST00000271373 798 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
CLDN9O95484 LRRC23-202ENST00000323702 1208 ntAPPRIS ALT2 TSL 1 (best) BASIC17.62■□□□□ 0.41
CLDN9O95484 Telomerase-vert.1-201ENST00000363312 438 ntBASIC17.62■□□□□ 0.41
CLDN9O95484 S100A16-203ENST00000368705 956 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
CLDN9O95484 TMEM88B-201ENST00000378821 492 ntAPPRIS P1 TSL 2 BASIC17.62■□□□□ 0.41
CLDN9O95484 MNT-208ENST00000575394 606 ntTSL 4 BASIC17.62■□□□□ 0.41
CLDN9O95484 SYNGR4-204ENST00000601610 859 ntTSL 3 BASIC17.62■□□□□ 0.41
CLDN9O95484 KLHL33-202ENST00000636854 2394 ntAPPRIS P1 TSL 5 BASIC17.62■□□□□ 0.41
CLDN9O95484 KRT18P22-201ENST00000402024 1347 ntBASIC17.62■□□□□ 0.41
CLDN9O95484 NEK2-205ENST00000540251 1318 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
CLDN9O95484 MID1IP1-202ENST00000378474 1889 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
CLDN9O95484 AP005717.1-201ENST00000500705 1899 ntTSL 5 BASIC17.62■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 33 ms