Protein–RNA interactions for Protein: O95025

SEMA3D, Semaphorin-3D, humanhuman

Predictions only

Length 777 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SEMA3DO95025 NOTCH3-201ENST00000263388 8666 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
SEMA3DO95025 SLC5A10-204ENST00000395647 2140 ntTSL 2 BASIC17.47■□□□□ 0.39
SEMA3DO95025 AC107464.1-203ENST00000468356 2120 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
SEMA3DO95025 LINC00535-201ENST00000501400 1914 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
SEMA3DO95025 CDX4-201ENST00000373514 1515 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
SEMA3DO95025 GMDS-208ENST00000530927 1440 ntAPPRIS ALT2 TSL 1 (best) BASIC17.47■□□□□ 0.39
SEMA3DO95025 PJA1-202ENST00000374571 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC17.46■□□□□ 0.39
SEMA3DO95025 FBXL15-201ENST00000224862 2362 ntAPPRIS P2 TSL 1 (best) BASIC17.46■□□□□ 0.39
SEMA3DO95025 SAR1B-208ENST00000507419 2287 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
SEMA3DO95025 ADGRG2-202ENST00000354791 4494 ntTSL 5 BASIC17.46■□□□□ 0.39
SEMA3DO95025 FBXO44-201ENST00000251546 1896 ntTSL 2 BASIC17.46■□□□□ 0.39
SEMA3DO95025 ZBTB33-201ENST00000326624 5211 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
SEMA3DO95025 ZBTB16-201ENST00000335953 2523 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
SEMA3DO95025 FAM135A-205ENST00000418814 6415 ntTSL 5 BASIC17.46■□□□□ 0.39
SEMA3DO95025 ACD-215ENST00000620761 1483 ntAPPRIS ALT2 TSL 1 (best) BASIC17.46■□□□□ 0.39
SEMA3DO95025 STK25-203ENST00000403346 2210 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
SEMA3DO95025 POMZP3-201ENST00000275569 1259 ntTSL 2 BASIC17.46■□□□□ 0.39
SEMA3DO95025 CR769775.1-204ENST00000439760 747 ntTSL 5 BASIC17.46■□□□□ 0.39
SEMA3DO95025 MAP3K13-213ENST00000454237 526 ntTSL 3 BASIC17.46■□□□□ 0.39
SEMA3DO95025 AL365295.1-202ENST00000456100 562 ntTSL 4 BASIC17.46■□□□□ 0.39
SEMA3DO95025 RPL29-204ENST00000479017 670 ntAPPRIS P1 TSL 3 BASIC17.46■□□□□ 0.39
SEMA3DO95025 AC098829.1-201ENST00000502344 630 ntTSL 3 BASIC17.46■□□□□ 0.39
SEMA3DO95025 PLXND1-205ENST00000504689 546 ntTSL 3 BASIC17.46■□□□□ 0.39
SEMA3DO95025 AL132780.2-201ENST00000557615 1021 ntTSL 3 BASIC17.46■□□□□ 0.39
SEMA3DO95025 KAZN-208ENST00000636203 6874 ntTSL 5 BASIC17.46■□□□□ 0.39
SEMA3DO95025 UBR3-203ENST00000418381 7951 ntAPPRIS P1 TSL 5 BASIC17.46■□□□□ 0.39
SEMA3DO95025 DDHD1-201ENST00000323669 5503 ntTSL 2 BASIC17.46■□□□□ 0.39
SEMA3DO95025 CCDC88C-203ENST00000389856 1641 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
SEMA3DO95025 BEGAIN-211ENST00000637646 2911 ntTSL 5 BASIC17.46■□□□□ 0.39
SEMA3DO95025 L3HYPDH-201ENST00000247194 1527 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
SEMA3DO95025 LINC00634-201ENST00000381348 1510 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
SEMA3DO95025 NR4A1-203ENST00000394824 2639 ntAPPRIS P1 TSL 5 BASIC17.46■□□□□ 0.39
SEMA3DO95025 KLHDC4-227ENST00000622456 1422 ntTSL 5 BASIC17.46■□□□□ 0.39
SEMA3DO95025 PPP1R7-202ENST00000272983 1954 ntTSL 2 BASIC17.46■□□□□ 0.39
SEMA3DO95025 CUTC-202ENST00000370476 1346 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.38
SEMA3DO95025 TBX18-202ENST00000369663 6245 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
SEMA3DO95025 SPPL2C-201ENST00000329196 2238 ntAPPRIS P1 BASIC17.45■□□□□ 0.38
SEMA3DO95025 ETS1-208ENST00000535549 4594 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
SEMA3DO95025 GAREM2-201ENST00000401533 4161 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
SEMA3DO95025 TBC1D10C-201ENST00000312390 1497 ntTSL 5 BASIC17.45■□□□□ 0.38
SEMA3DO95025 WDSUB1-203ENST00000392796 1812 ntAPPRIS P1 TSL 2 BASIC17.45■□□□□ 0.38
SEMA3DO95025 ACVRL1-202ENST00000419526 1356 ntTSL 2 BASIC17.45■□□□□ 0.38
SEMA3DO95025 GCSH-208ENST00000639169 2537 ntTSL 2 BASIC17.45■□□□□ 0.38
SEMA3DO95025 ZNF668-208ENST00000538906 2865 ntAPPRIS P1 TSL 2 BASIC17.45■□□□□ 0.38
SEMA3DO95025 AZU1-201ENST00000233997 908 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
SEMA3DO95025 OCIAD2-201ENST00000273860 636 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
SEMA3DO95025 TSPO2-202ENST00000373161 958 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
SEMA3DO95025 MUC1-212ENST00000457295 1161 ntAPPRIS ALT2 TSL 2 BASIC17.45■□□□□ 0.38
SEMA3DO95025 TSPO2-203ENST00000470917 699 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
SEMA3DO95025 TMUB1-205ENST00000482202 899 ntAPPRIS P1 TSL 3 BASIC17.45■□□□□ 0.38
SEMA3DO95025 OCIAD2-210ENST00000620187 697 ntTSL 3 BASIC17.45■□□□□ 0.38
SEMA3DO95025 COL18A1-202ENST00000355480 5924 ntAPPRIS P3 TSL 1 (best) BASIC17.45■□□□□ 0.38
SEMA3DO95025 MAPKAP1-205ENST00000373503 3045 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
SEMA3DO95025 TOR2A-205ENST00000463577 2211 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
SEMA3DO95025 IRAK3-202ENST00000457197 1853 ntTSL 2 BASIC17.45■□□□□ 0.38
SEMA3DO95025 INTS10-201ENST00000397977 2804 ntAPPRIS P1 TSL 2 BASIC17.45■□□□□ 0.38
SEMA3DO95025 EFCAB14-201ENST00000371933 5767 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
SEMA3DO95025 TPD52L1-202ENST00000368388 2147 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
SEMA3DO95025 PHGDH-209ENST00000641074 1780 ntBASIC17.45■□□□□ 0.38
SEMA3DO95025 RRP7BP-201ENST00000357802 2375 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
SEMA3DO95025 HEG1-201ENST00000311127 9156 ntAPPRIS P1 TSL 5 BASIC17.45■□□□□ 0.38
SEMA3DO95025 ATPAF1-214ENST00000576409 4158 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
SEMA3DO95025 ULK3-220ENST00000569437 2611 ntAPPRIS ALT1 TSL 1 (best) BASIC17.45■□□□□ 0.38
SEMA3DO95025 PMAIP1-202ENST00000316660 1948 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
SEMA3DO95025 TDRP-201ENST00000324079 3395 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
SEMA3DO95025 FAM53A-207ENST00000489363 2776 ntTSL 2 BASIC17.45■□□□□ 0.38
SEMA3DO95025 MALT1-202ENST00000348428 9368 ntAPPRIS P4 TSL 1 (best) BASIC17.44■□□□□ 0.38
SEMA3DO95025 FGFR3-202ENST00000340107 4293 ntAPPRIS ALT2 TSL 5 BASIC17.44■□□□□ 0.38
SEMA3DO95025 CORO6-210ENST00000580212 2345 ntTSL 5 BASIC17.44■□□□□ 0.38
SEMA3DO95025 HPCA-201ENST00000373467 1468 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
SEMA3DO95025 DAPK2-205ENST00000558069 1473 ntTSL 5 BASIC17.44■□□□□ 0.38
SEMA3DO95025 RAB4A-201ENST00000366690 2966 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
SEMA3DO95025 AL024508.2-201ENST00000607749 1894 ntBASIC17.44■□□□□ 0.38
SEMA3DO95025 ROMO1-205ENST00000397416 288 ntAPPRIS P1 TSL 3 BASIC17.44■□□□□ 0.38
SEMA3DO95025 KIRREL3-AS3-201ENST00000404882 831 ntBASIC17.44■□□□□ 0.38
SEMA3DO95025 AC074183.1-201ENST00000439105 782 ntTSL 5 BASIC17.44■□□□□ 0.38
SEMA3DO95025 HOXD8-203ENST00000450510 1268 ntAPPRIS ALT2 TSL 1 (best) BASIC17.44■□□□□ 0.38
SEMA3DO95025 NDUFV2-207ENST00000497577 868 ntTSL 2 BASIC17.44■□□□□ 0.38
SEMA3DO95025 LINC01385-201ENST00000512310 780 ntTSL 4 BASIC17.44■□□□□ 0.38
SEMA3DO95025 REEP1-207ENST00000535845 1196 ntTSL 2 BASIC17.44■□□□□ 0.38
SEMA3DO95025 REEP1-209ENST00000541910 969 ntTSL 2 BASIC17.44■□□□□ 0.38
SEMA3DO95025 ANP32AP1-202ENST00000560832 1074 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
SEMA3DO95025 AC002094.1-201ENST00000591482 1050 ntTSL 2 BASIC17.44■□□□□ 0.38
SEMA3DO95025 AC008687.5-201ENST00000593746 558 ntBASIC17.44■□□□□ 0.38
SEMA3DO95025 AC064834.1-201ENST00000606986 503 ntTSL 3 BASIC17.44■□□□□ 0.38
SEMA3DO95025 AC133561.5-201ENST00000635547 218 ntBASIC17.44■□□□□ 0.38
SEMA3DO95025 T-201ENST00000296946 2436 ntAPPRIS P1 TSL 5 BASIC17.44■□□□□ 0.38
SEMA3DO95025 KDM1A-202ENST00000400181 3059 ntAPPRIS ALT2 TSL 1 (best) BASIC17.44■□□□□ 0.38
SEMA3DO95025 CLASRP-203ENST00000391953 1941 ntTSL 2 BASIC17.44■□□□□ 0.38
SEMA3DO95025 NPEPL1-204ENST00000525967 1917 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
SEMA3DO95025 PNLDC1-207ENST00000610273 1940 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
SEMA3DO95025 GABBR1-204ENST00000377016 4299 ntTSL 5 BASIC17.44■□□□□ 0.38
SEMA3DO95025 TNFAIP2-201ENST00000333007 4175 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
SEMA3DO95025 CIZ1-226ENST00000629610 2855 ntAPPRIS ALT2 TSL 2 BASIC17.44■□□□□ 0.38
SEMA3DO95025 SHKBP1-201ENST00000291842 2363 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
SEMA3DO95025 HAGHL-203ENST00000389703 1347 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
SEMA3DO95025 MECP2-205ENST00000453960 1729 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
SEMA3DO95025 BMS1P4-202ENST00000584747 1716 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
SEMA3DO95025 GPATCH3-201ENST00000361720 2123 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
SEMA3DO95025 STK10-201ENST00000176763 6060 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 35 ms