Protein–RNA interactions for Protein: O60260

PRKN, E3 ubiquitin-protein ligase parkin, humanhuman

Predicted RBP Predictions only

Length 465 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKNO60260 SHKBP1-201ENST00000291842 2363 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
PRKNO60260 AC135776.1-201ENST00000319817 2481 ntBASIC16.96■□□□□ 0.31
PRKNO60260 DDX42-202ENST00000389924 3939 ntAPPRIS P1 TSL 5 BASIC16.96■□□□□ 0.31
PRKNO60260 ULK3-220ENST00000569437 2611 ntAPPRIS ALT1 TSL 1 (best) BASIC16.96■□□□□ 0.3
PRKNO60260 ZBTB8A-201ENST00000316459 1943 ntTSL 1 (best) BASIC16.96■□□□□ 0.3
PRKNO60260 TBC1D3I-202ENST00000618620 1900 ntTSL 1 (best) BASIC16.96■□□□□ 0.3
PRKNO60260 SLC39A7-201ENST00000374675 2153 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
PRKNO60260 ZNF213-201ENST00000396878 3313 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
PRKNO60260 AL024508.2-201ENST00000607749 1894 ntBASIC16.95■□□□□ 0.3
PRKNO60260 LARGE2-202ENST00000401752 2516 ntAPPRIS P3 TSL 1 (best) BASIC16.95■□□□□ 0.3
PRKNO60260 CHID1-203ENST00000436108 1477 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
PRKNO60260 MMD2-202ENST00000404774 2415 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
PRKNO60260 RAX2-201ENST00000555633 2414 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
PRKNO60260 HSD17B10-201ENST00000168216 960 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
PRKNO60260 AGPAT3-201ENST00000291572 5546 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
PRKNO60260 ZNF575-201ENST00000314228 1298 ntAPPRIS P1 TSL 2 BASIC16.95■□□□□ 0.3
PRKNO60260 ATP6V0C-201ENST00000330398 1175 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
PRKNO60260 LRRC27-203ENST00000368613 2113 ntAPPRIS P3 TSL 1 (best) BASIC16.95■□□□□ 0.3
PRKNO60260 GGT1-208ENST00000404920 657 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
PRKNO60260 KRT18P48-201ENST00000434763 852 ntBASIC16.95■□□□□ 0.3
PRKNO60260 GGTLC2-203ENST00000480559 657 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
PRKNO60260 FNDC5-205ENST00000496770 837 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
PRKNO60260 AC106771.1-201ENST00000502209 372 ntTSL 2 BASIC16.95■□□□□ 0.3
PRKNO60260 LINC02106-201ENST00000506534 606 ntTSL 2 BASIC16.95■□□□□ 0.3
PRKNO60260 CSRP1-214ENST00000531916 890 ntTSL 5 BASIC16.95■□□□□ 0.3
PRKNO60260 GALNT2-201ENST00000366672 4454 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
PRKNO60260 CBS-203ENST00000398158 2453 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
PRKNO60260 CBSL-206ENST00000624406 2453 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
PRKNO60260 CTSB-202ENST00000353047 3875 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
PRKNO60260 RGS3-202ENST00000342620 1714 ntTSL 5 BASIC16.95■□□□□ 0.3
PRKNO60260 ARHGAP9-202ENST00000393797 2912 ntAPPRIS ALT2 TSL 1 (best) BASIC16.95■□□□□ 0.3
PRKNO60260 PCDH1-201ENST00000287008 4793 ntAPPRIS P3 TSL 5 BASIC16.95■□□□□ 0.3
PRKNO60260 CCDC17-209ENST00000528266 2181 ntAPPRIS P3 TSL 2 BASIC16.95■□□□□ 0.3
PRKNO60260 GRIN3B-201ENST00000234389 3281 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
PRKNO60260 TTLL9-205ENST00000375938 2623 ntAPPRIS P2 TSL 2 BASIC16.95■□□□□ 0.3
PRKNO60260 KRT6A-201ENST00000330722 2310 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
PRKNO60260 ANKS3-201ENST00000304283 2662 ntAPPRIS P1 TSL 2 BASIC16.94■□□□□ 0.3
PRKNO60260 KRT13-201ENST00000246635 1699 ntAPPRIS P4 TSL 1 (best) BASIC16.94■□□□□ 0.3
PRKNO60260 GTF2H4-202ENST00000376316 1673 ntAPPRIS P1 TSL 5 BASIC16.94■□□□□ 0.3
PRKNO60260 CAMKK2-207ENST00000404169 2116 ntAPPRIS P4 TSL 1 (best) BASIC16.94■□□□□ 0.3
PRKNO60260 GPSM2-201ENST00000264126 3032 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
PRKNO60260 NOMO2-201ENST00000330537 4352 ntAPPRIS ALT2 TSL 5 BASIC16.94■□□□□ 0.3
PRKNO60260 PDIA2-202ENST00000404312 1575 ntAPPRIS ALT2 TSL 5 BASIC16.94■□□□□ 0.3
PRKNO60260 CLK1-205ENST00000434813 2026 ntTSL 2 BASIC16.94■□□□□ 0.3
PRKNO60260 PLA2G2F-201ENST00000375102 2723 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
PRKNO60260 NIFK-201ENST00000285814 1734 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
PRKNO60260 HAAO-201ENST00000294973 1265 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
PRKNO60260 MED30-201ENST00000297347 985 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
PRKNO60260 PLAC8-202ENST00000411416 786 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
PRKNO60260 PLPP5-202ENST00000422581 853 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
PRKNO60260 CBR1-203ENST00000439427 1024 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
PRKNO60260 DMKN-212ENST00000443640 842 ntAPPRIS ALT2 TSL 5 BASIC16.94■□□□□ 0.3
PRKNO60260 AP003733.1-201ENST00000491725 852 ntBASIC16.94■□□□□ 0.3
PRKNO60260 AC051649.1-201ENST00000509204 330 ntTSL 3 BASIC16.94■□□□□ 0.3
PRKNO60260 FAM53C-211ENST00000513056 923 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
PRKNO60260 AC005332.3-201ENST00000589904 676 ntBASIC16.94■□□□□ 0.3
PRKNO60260 TMEM114-203ENST00000620492 945 ntAPPRIS P1 TSL 2 BASIC16.94■□□□□ 0.3
PRKNO60260 Z83836.1-201ENST00000624605 1642 ntBASIC16.94■□□□□ 0.3
PRKNO60260 FBXO44-201ENST00000251546 1896 ntTSL 2 BASIC16.94■□□□□ 0.3
PRKNO60260 KRT24-201ENST00000264651 1881 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
PRKNO60260 HAUS8-202ENST00000448593 1545 ntAPPRIS ALT2 TSL 5 BASIC16.94■□□□□ 0.3
PRKNO60260 SLC9A6-201ENST00000370695 4725 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
PRKNO60260 NPR3-204ENST00000434067 2715 ntTSL 5 BASIC16.94■□□□□ 0.3
PRKNO60260 AC118553.2-202ENST00000638792 2729 ntAPPRIS ALT2 TSL 5 BASIC16.94■□□□□ 0.3
PRKNO60260 UNKL-202ENST00000301712 1431 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
PRKNO60260 SOD2-206ENST00000452684 2045 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
PRKNO60260 ACSL6-205ENST00000379246 2622 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
PRKNO60260 ZNF131-206ENST00000505606 3209 ntAPPRIS P1 TSL 5 BASIC16.94■□□□□ 0.3
PRKNO60260 ZNRF2-201ENST00000323037 3460 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
PRKNO60260 TRIM36-202ENST00000379617 1322 ntTSL 2 BASIC16.94■□□□□ 0.3
PRKNO60260 BAG5-201ENST00000299204 4848 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
PRKNO60260 ADORA2A-214ENST00000611543 2412 ntAPPRIS P1 TSL 5 BASIC16.94■□□□□ 0.3
PRKNO60260 IFFO1-204ENST00000396840 2677 ntAPPRIS ALT1 TSL 5 BASIC16.93■□□□□ 0.3
PRKNO60260 TLE3-226ENST00000627388 5742 ntAPPRIS ALT1 TSL 5 BASIC16.93■□□□□ 0.3
PRKNO60260 FOXI1-201ENST00000306268 1990 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
PRKNO60260 CBX2-202ENST00000310942 4644 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
PRKNO60260 CLEC4G-201ENST00000328853 1360 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
PRKNO60260 PTPRN2-204ENST00000404321 1374 ntTSL 5 BASIC16.93■□□□□ 0.3
PRKNO60260 PSMG4-209ENST00000473000 4603 ntTSL 2 BASIC16.93■□□□□ 0.3
PRKNO60260 AC016734.2-201ENST00000624325 1377 ntBASIC16.93■□□□□ 0.3
PRKNO60260 PANX1-201ENST00000227638 2769 ntAPPRIS P2 TSL 1 (best) BASIC16.93■□□□□ 0.3
PRKNO60260 SLC47A2-201ENST00000325411 2258 ntAPPRIS P3 TSL 1 (best) BASIC16.93■□□□□ 0.3
PRKNO60260 PRODH-205ENST00000420436 2034 ntAPPRIS ALT2 TSL 2 BASIC16.93■□□□□ 0.3
PRKNO60260 GXYLT1-202ENST00000398675 7497 ntAPPRIS P4 TSL 1 (best) BASIC16.93■□□□□ 0.3
PRKNO60260 SLC22A18-203ENST00000380574 1755 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
PRKNO60260 MRPL20-201ENST00000344843 721 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
PRKNO60260 TBPL1-203ENST00000367871 808 ntTSL 2 BASIC16.93■□□□□ 0.3
PRKNO60260 DUSP15-203ENST00000375966 1077 ntTSL 3 BASIC16.93■□□□□ 0.3
PRKNO60260 DUSP15-204ENST00000398083 1212 ntTSL 5 BASIC16.93■□□□□ 0.3
PRKNO60260 AC020558.2-201ENST00000582325 795 ntTSL 3 BASIC16.93■□□□□ 0.3
PRKNO60260 MIR2117HG-201ENST00000588060 506 ntTSL 4 BASIC16.93■□□□□ 0.3
PRKNO60260 LINC01785-201ENST00000598042 1112 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
PRKNO60260 AC069148.1-201ENST00000608741 768 ntBASIC16.93■□□□□ 0.3
PRKNO60260 KCNE1B-204ENST00000623803 811 ntAPPRIS P2 TSL 1 (best) BASIC16.93■□□□□ 0.3
PRKNO60260 SPACA6-213ENST00000637797 1073 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
PRKNO60260 NECAB1-201ENST00000417640 5289 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
PRKNO60260 CNIH3-201ENST00000272133 2558 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
PRKNO60260 MIDN-206ENST00000591446 3243 ntAPPRIS P2 TSL 1 (best) BASIC16.93■□□□□ 0.3
PRKNO60260 ABHD13-201ENST00000375898 5338 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
PRKNO60260 CAMK2B-203ENST00000347193 1577 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 42.4 ms