Protein–RNA interactions for Protein: O15457

MSH4, MutS protein homolog 4, humanhuman

Predictions only

Length 936 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH4O15457 ICA1-206ENST00000402384 2458 ntAPPRIS P3 TSL 2 BASIC20.42■□□□□ 0.86
MSH4O15457 GNG5-202ENST00000370645 790 ntAPPRIS P1 TSL 2 BASIC20.42■□□□□ 0.86
MSH4O15457 MOBP-204ENST00000420739 940 ntAPPRIS P4 TSL 5 BASIC20.42■□□□□ 0.86
MSH4O15457 NDUFB9-202ENST00000517367 636 ntTSL 3 BASIC20.42■□□□□ 0.86
MSH4O15457 SELENOH-204ENST00000534355 818 ntAPPRIS P2 TSL 1 (best) BASIC20.42■□□□□ 0.86
MSH4O15457 VASH1-204ENST00000554743 1096 ntTSL 3 BASIC20.42■□□□□ 0.86
MSH4O15457 NUTF2-205ENST00000568396 1179 ntAPPRIS P1 TSL 3 BASIC20.42■□□□□ 0.86
MSH4O15457 METRN-205ENST00000568415 612 ntAPPRIS ALT2 TSL 3 BASIC20.42■□□□□ 0.86
MSH4O15457 IL11-204ENST00000590625 1028 ntTSL 2 BASIC20.42■□□□□ 0.86
MSH4O15457 EML2-AS1-203ENST00000623430 886 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
MSH4O15457 OGFOD2-212ENST00000538755 1949 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
MSH4O15457 TSR1-201ENST00000301364 5188 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
MSH4O15457 TTLL9-205ENST00000375938 2623 ntAPPRIS P2 TSL 2 BASIC20.41■□□□□ 0.86
MSH4O15457 PTGES-201ENST00000340607 1774 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
MSH4O15457 RNH1-201ENST00000354420 1894 ntAPPRIS P1 TSL 5 BASIC20.41■□□□□ 0.86
MSH4O15457 NPFFR2-201ENST00000308744 1922 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
MSH4O15457 MSC-201ENST00000325509 2023 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
MSH4O15457 NDRG2-208ENST00000397851 2022 ntAPPRIS P4 TSL 2 BASIC20.41■□□□□ 0.86
MSH4O15457 TRAPPC3-202ENST00000373162 1056 ntTSL 2 BASIC20.41■□□□□ 0.86
MSH4O15457 CXorf40A-202ENST00000393985 1148 ntAPPRIS P3 TSL 1 (best) BASIC20.41■□□□□ 0.86
MSH4O15457 AC068472.1-201ENST00000474589 881 ntBASIC20.41■□□□□ 0.86
MSH4O15457 AP1S2-206ENST00000545766 576 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
MSH4O15457 CIB2-208ENST00000560618 804 ntTSL 2 BASIC20.41■□□□□ 0.86
MSH4O15457 RTBDN-213ENST00000592204 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC20.41■□□□□ 0.86
MSH4O15457 TMIGD2-202ENST00000595645 1212 ntAPPRIS ALT2 TSL 1 (best) BASIC20.41■□□□□ 0.86
MSH4O15457 AC009154.2-201ENST00000621177 724 ntBASIC20.41■□□□□ 0.86
MSH4O15457 SETD3-209ENST00000630307 1281 ntTSL 5 BASIC20.41■□□□□ 0.86
MSH4O15457 NDUFA10-202ENST00000307300 1313 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
MSH4O15457 TAX1BP3-202ENST00000611779 1302 ntTSL 2 BASIC20.41■□□□□ 0.86
MSH4O15457 PCSK5-202ENST00000376767 2845 ntTSL 2 BASIC20.41■□□□□ 0.86
MSH4O15457 CDK10-208ENST00000505473 1424 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
MSH4O15457 MAZ-212ENST00000568282 1593 ntTSL 5 BASIC20.41■□□□□ 0.86
MSH4O15457 DAP3-214ENST00000471642 1671 ntTSL 5 BASIC20.41■□□□□ 0.86
MSH4O15457 FLYWCH1P1-201ENST00000460917 1874 ntBASIC20.41■□□□□ 0.86
MSH4O15457 SAMD14-203ENST00000503131 1938 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
MSH4O15457 PCBP3-206ENST00000400314 2202 ntAPPRIS P2 TSL 5 BASIC20.41■□□□□ 0.86
MSH4O15457 ACADVL-205ENST00000543245 2227 ntTSL 2 BASIC20.41■□□□□ 0.86
MSH4O15457 ZNF446-203ENST00000594369 2238 ntAPPRIS P2 TSL 1 (best) BASIC20.41■□□□□ 0.86
MSH4O15457 ARHGAP11A-208ENST00000567348 2422 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
MSH4O15457 NRXN1-202ENST00000342183 3315 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
MSH4O15457 ORC5-201ENST00000297431 1958 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
MSH4O15457 FAM90A1-201ENST00000307435 2342 ntAPPRIS P1 TSL 2 BASIC20.4■□□□□ 0.86
MSH4O15457 OR10H5-201ENST00000308940 1132 ntAPPRIS P1 BASIC20.4■□□□□ 0.86
MSH4O15457 ISCU-201ENST00000311893 994 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
MSH4O15457 TPD52L1-202ENST00000368388 2147 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
MSH4O15457 PNCK-203ENST00000370145 1455 ntTSL 2 BASIC20.4■□□□□ 0.86
MSH4O15457 TTC22-201ENST00000371274 2149 ntTSL 2 BASIC20.4■□□□□ 0.86
MSH4O15457 DLK2-203ENST00000372488 1590 ntAPPRIS P3 TSL 1 (best) BASIC20.4■□□□□ 0.86
MSH4O15457 ROMO1-204ENST00000374078 498 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
MSH4O15457 PHF2-202ENST00000375376 3045 ntTSL 5 BASIC20.4■□□□□ 0.86
MSH4O15457 COBL-202ENST00000395540 2332 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
MSH4O15457 TM2D2-201ENST00000397070 1631 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
MSH4O15457 DECR2-202ENST00000424398 1012 ntTSL 5 BASIC20.4■□□□□ 0.86
MSH4O15457 LINC01315-202ENST00000424852 1142 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
MSH4O15457 LINC01700-201ENST00000433952 1598 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
MSH4O15457 KRT18P65-201ENST00000439811 1286 ntBASIC20.4■□□□□ 0.86
MSH4O15457 PCBP4-210ENST00000471622 1784 ntTSL 5 BASIC20.4■□□□□ 0.86
MSH4O15457 SMIM29-206ENST00000476320 1297 ntAPPRIS P1 TSL 2 BASIC20.4■□□□□ 0.86
MSH4O15457 AC091607.1-201ENST00000490318 1060 ntBASIC20.4■□□□□ 0.86
MSH4O15457 AC113382.1-201ENST00000500267 1253 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
MSH4O15457 GABRB2-206ENST00000520240 2030 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
MSH4O15457 COX6C-204ENST00000520271 571 ntAPPRIS P1 TSL 2 BASIC20.4■□□□□ 0.86
MSH4O15457 C6orf141-206ENST00000529246 1450 ntAPPRIS P1 BASIC20.4■□□□□ 0.86
MSH4O15457 C1QTNF1-205ENST00000578229 1294 ntTSL 4 BASIC20.4■□□□□ 0.86
MSH4O15457 GNAS-AS1-203ENST00000598163 548 ntTSL 4 BASIC20.4■□□□□ 0.86
MSH4O15457 KISS1R-203ENST00000606939 964 ntTSL 5 BASIC20.4■□□□□ 0.86
MSH4O15457 ANKS3-230ENST00000614075 2387 ntAPPRIS P1 TSL 5 BASIC20.4■□□□□ 0.86
MSH4O15457 ANKRD20A8P-203ENST00000641373 517 ntBASIC20.4■□□□□ 0.86
MSH4O15457 KCNMA1-293ENST00000640969 5789 ntAPPRIS ALT2 TSL 5 BASIC20.4■□□□□ 0.86
MSH4O15457 LUC7L2-210ENST00000619796 2783 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
MSH4O15457 ACSL6-205ENST00000379246 2622 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
MSH4O15457 EI24-201ENST00000278903 2455 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
MSH4O15457 SLC47A2-201ENST00000325411 2258 ntAPPRIS P3 TSL 1 (best) BASIC20.39■□□□□ 0.86
MSH4O15457 TMED3-201ENST00000299705 1475 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
MSH4O15457 AP003356.1-202ENST00000517910 2770 ntTSL 2 BASIC20.39■□□□□ 0.85
MSH4O15457 ACVRL1-202ENST00000419526 1356 ntTSL 2 BASIC20.39■□□□□ 0.85
MSH4O15457 FAM239B-201ENST00000381106 1099 ntTSL 2 BASIC20.39■□□□□ 0.85
MSH4O15457 ENO1-AS1-201ENST00000442636 456 ntTSL 2 BASIC20.39■□□□□ 0.85
MSH4O15457 AC234772.2-201ENST00000456532 375 ntTSL 3 BASIC20.39■□□□□ 0.85
MSH4O15457 TOB2P1-201ENST00000469761 992 ntBASIC20.39■□□□□ 0.85
MSH4O15457 KRT18P56-201ENST00000507275 550 ntBASIC20.39■□□□□ 0.85
MSH4O15457 PDCD6-207ENST00000509581 1156 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
MSH4O15457 GPHA2-202ENST00000532246 466 ntTSL 3 BASIC20.39■□□□□ 0.85
MSH4O15457 ANKRD29-202ENST00000585908 846 ntTSL 2 BASIC20.39■□□□□ 0.85
MSH4O15457 AL353801.3-201ENST00000609898 542 ntBASIC20.39■□□□□ 0.85
MSH4O15457 MID1IP1-201ENST00000336949 2536 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
MSH4O15457 GGNBP2-210ENST00000611219 2315 ntTSL 2 BASIC20.39■□□□□ 0.85
MSH4O15457 CXXC1-202ENST00000412036 2280 ntAPPRIS ALT1 TSL 1 (best) BASIC20.39■□□□□ 0.85
MSH4O15457 NFIX-202ENST00000360105 5459 ntTSL 5 BASIC20.39■□□□□ 0.85
MSH4O15457 C11orf58-201ENST00000228136 2049 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
MSH4O15457 CHTF8-203ENST00000448552 2903 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
MSH4O15457 LPAR2-201ENST00000407877 1791 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
MSH4O15457 TBC1D9-201ENST00000442267 5306 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
MSH4O15457 B4GALT4-202ENST00000393765 2459 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
MSH4O15457 MAFF-206ENST00000538320 2458 ntAPPRIS P1 TSL 4 BASIC20.38■□□□□ 0.85
MSH4O15457 CCDC88C-203ENST00000389856 1641 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
MSH4O15457 USF2-202ENST00000343550 1523 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
MSH4O15457 STARD7-AS1-202ENST00000446816 1527 ntTSL 2 BASIC20.38■□□□□ 0.85
MSH4O15457 SLC5A10-203ENST00000395645 2069 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
MSH4O15457 DTNBP1-203ENST00000355917 1359 ntTSL 5 BASIC20.38■□□□□ 0.85
Retrieved 100 of 98,524 protein–RNA pairs in 24.2 ms