Protein–RNA interactions for Protein: A6NC98

CCDC88B, Coiled-coil domain-containing protein 88B, humanhuman

Predictions only

Length 1,476 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88BA6NC98 MORN1-203ENST00000378531 1798 ntAPPRIS P3 TSL 2 BASIC31.43■■■□□ 2.62
CCDC88BA6NC98 TSTD1-203ENST00000368024 457 ntTSL 2 BASIC31.43■■■□□ 2.62
CCDC88BA6NC98 MRPS16-201ENST00000372940 866 ntTSL 2 BASIC31.43■■■□□ 2.62
CCDC88BA6NC98 PMS2P2-201ENST00000425039 1128 ntBASIC31.43■■■□□ 2.62
CCDC88BA6NC98 CRCP-205ENST00000431089 942 ntTSL 2 BASIC31.43■■■□□ 2.62
CCDC88BA6NC98 AC234772.2-201ENST00000456532 375 ntTSL 3 BASIC31.43■■■□□ 2.62
CCDC88BA6NC98 AC112482.1-201ENST00000492080 688 ntBASIC31.43■■■□□ 2.62
CCDC88BA6NC98 PP7080-203ENST00000510604 859 ntTSL 1 (best) BASIC31.43■■■□□ 2.62
CCDC88BA6NC98 MVB12A-211ENST00000529939 1091 ntTSL 3 BASIC31.43■■■□□ 2.62
CCDC88BA6NC98 ABO-202ENST00000538324 1147 ntAPPRIS P5 TSL 5 BASIC31.43■■■□□ 2.62
CCDC88BA6NC98 H2AFJ-203ENST00000544848 644 ntAPPRIS P1 BASIC31.43■■■□□ 2.62
CCDC88BA6NC98 ETFA-208ENST00000559602 792 ntTSL 3 BASIC31.43■■■□□ 2.62
CCDC88BA6NC98 ACYP2-209ENST00000607452 831 ntTSL 2 BASIC31.43■■■□□ 2.62
CCDC88BA6NC98 AD001527.2-201ENST00000622994 785 ntBASIC31.43■■■□□ 2.62
CCDC88BA6NC98 NRN1-201ENST00000244766 1624 ntAPPRIS P1 TSL 1 (best) BASIC31.43■■■□□ 2.62
CCDC88BA6NC98 MBD1-216ENST00000587605 1945 ntTSL 2 BASIC31.43■■■□□ 2.62
CCDC88BA6NC98 TRMT44-205ENST00000513449 1666 ntAPPRIS ALT2 TSL 1 (best) BASIC31.43■■■□□ 2.62
CCDC88BA6NC98 PRRG3-205ENST00000538575 1303 ntAPPRIS P1 TSL 5 BASIC31.42■■■□□ 2.62
CCDC88BA6NC98 LY6E-207ENST00000520466 1419 ntAPPRIS P2 TSL 2 BASIC31.42■■■□□ 2.62
CCDC88BA6NC98 SH3BP5-203ENST00000408919 1880 ntTSL 1 (best) BASIC31.42■■■□□ 2.62
CCDC88BA6NC98 MRGPRF-201ENST00000309099 2295 ntAPPRIS P1 TSL 1 (best) BASIC31.42■■■□□ 2.62
CCDC88BA6NC98 PMP22-202ENST00000395936 816 ntTSL 3 BASIC31.42■■■□□ 2.62
CCDC88BA6NC98 MCF2L-AS1-201ENST00000446789 712 ntTSL 3 BASIC31.42■■■□□ 2.62
CCDC88BA6NC98 ANKRD13D-218ENST00000515828 1111 ntTSL 1 (best) BASIC31.42■■■□□ 2.62
CCDC88BA6NC98 RGS11-203ENST00000359740 1371 ntTSL 1 (best) BASIC31.42■■■□□ 2.62
CCDC88BA6NC98 ATG2A-203ENST00000421419 1481 ntTSL 1 (best) BASIC31.42■■■□□ 2.62
CCDC88BA6NC98 PSMD8-207ENST00000592035 1581 ntTSL 1 (best) BASIC31.42■■■□□ 2.62
CCDC88BA6NC98 NRN1-204ENST00000622188 1795 ntTSL 2 BASIC31.42■■■□□ 2.62
CCDC88BA6NC98 CDC42EP1-201ENST00000249014 2181 ntAPPRIS P2 TSL 1 (best) BASIC31.42■■■□□ 2.62
CCDC88BA6NC98 IDH3G-202ENST00000370092 1712 ntTSL 5 BASIC31.42■■■□□ 2.62
CCDC88BA6NC98 WWOX-203ENST00000406884 1701 ntTSL 1 (best) BASIC31.42■■■□□ 2.62
CCDC88BA6NC98 PYCR1-217ENST00000629768 1740 ntTSL 5 BASIC31.42■■■□□ 2.62
CCDC88BA6NC98 ASMTL-201ENST00000381317 2027 ntAPPRIS P3 TSL 1 (best) BASIC31.41■■■□□ 2.62
CCDC88BA6NC98 DLG3-203ENST00000374360 5905 ntAPPRIS P2 TSL 1 (best) BASIC31.41■■■□□ 2.62
CCDC88BA6NC98 LINC01011-201ENST00000445000 2811 ntTSL 2 BASIC31.41■■■□□ 2.62
CCDC88BA6NC98 SMN1-201ENST00000351205 900 ntAPPRIS P3 TSL 1 (best) BASIC31.41■■■□□ 2.62
CCDC88BA6NC98 FCN1-201ENST00000371806 1286 ntAPPRIS P1 TSL 1 (best) BASIC31.41■■■□□ 2.62
CCDC88BA6NC98 INIP-202ENST00000374236 874 ntTSL 2 BASIC31.41■■■□□ 2.62
CCDC88BA6NC98 SMN2-201ENST00000380741 900 ntAPPRIS P4 TSL 1 (best) BASIC31.41■■■□□ 2.62
CCDC88BA6NC98 AC096633.1-201ENST00000422446 749 ntBASIC31.41■■■□□ 2.62
CCDC88BA6NC98 RFX3-AS1-201ENST00000423112 552 ntTSL 3 BASIC31.41■■■□□ 2.62
CCDC88BA6NC98 DHDH-204ENST00000523250 634 ntTSL 5 BASIC31.41■■■□□ 2.62
CCDC88BA6NC98 SDCCAG3P1-201ENST00000589292 1150 ntBASIC31.41■■■□□ 2.62
CCDC88BA6NC98 SMN2-216ENST00000638794 846 ntAPPRIS ALT2 TSL 5 BASIC31.41■■■□□ 2.62
CCDC88BA6NC98 FNDC8-201ENST00000158009 1388 ntAPPRIS P1 TSL 1 (best) BASIC31.41■■■□□ 2.62
CCDC88BA6NC98 FIP1L1-207ENST00000507922 1335 ntTSL 1 (best) BASIC31.41■■■□□ 2.62
CCDC88BA6NC98 AC097374.2-201ENST00000618617 1306 ntBASIC31.41■■■□□ 2.62
CCDC88BA6NC98 ATP1B1-201ENST00000367815 1883 ntAPPRIS P1 TSL 1 (best) BASIC31.41■■■□□ 2.62
CCDC88BA6NC98 GGN-201ENST00000334928 2239 ntAPPRIS P1 TSL 1 (best) BASIC31.4■■■□□ 2.62
CCDC88BA6NC98 PIH1D1-201ENST00000262265 1192 ntAPPRIS P1 TSL 1 (best) BASIC31.4■■■□□ 2.62
CCDC88BA6NC98 SEC11C-205ENST00000588875 718 ntTSL 2 BASIC31.4■■■□□ 2.62
CCDC88BA6NC98 SUSD1-204ENST00000374270 3124 ntAPPRIS P3 TSL 1 (best) BASIC31.4■■■□□ 2.62
CCDC88BA6NC98 RARRES1-201ENST00000237696 1952 ntAPPRIS P1 TSL 1 (best) BASIC31.4■■■□□ 2.62
CCDC88BA6NC98 ARSE-201ENST00000381134 1853 ntAPPRIS P1 TSL 1 (best) BASIC31.4■■■□□ 2.62
CCDC88BA6NC98 GDPD1-201ENST00000284116 1821 ntAPPRIS P1 TSL 1 (best) BASIC31.4■■■□□ 2.62
CCDC88BA6NC98 SRSF2-205ENST00000508921 1390 ntTSL 2 BASIC31.4■■■□□ 2.62
CCDC88BA6NC98 ANO7L1-203ENST00000602586 1720 ntBASIC31.4■■■□□ 2.62
CCDC88BA6NC98 PDCD10-201ENST00000392750 2067 ntAPPRIS P1 TSL 1 (best) BASIC31.4■■■□□ 2.62
CCDC88BA6NC98 PIGU-202ENST00000374820 1248 ntAPPRIS ALT2 TSL 1 (best) BASIC31.4■■■□□ 2.62
CCDC88BA6NC98 GLIPR1L1-202ENST00000378695 885 ntAPPRIS ALT2 TSL 1 (best) BASIC31.4■■■□□ 2.62
CCDC88BA6NC98 SRP19-202ENST00000445150 833 ntTSL 2 BASIC31.4■■■□□ 2.62
CCDC88BA6NC98 AC004967.1-201ENST00000453589 447 ntBASIC31.4■■■□□ 2.62
CCDC88BA6NC98 LINGO1-AS2-201ENST00000557799 663 ntTSL 1 (best) BASIC31.4■■■□□ 2.62
CCDC88BA6NC98 AL022328.4-201ENST00000608025 1001 ntTSL 2 BASIC31.4■■■□□ 2.62
CCDC88BA6NC98 TCTN1-223ENST00000550703 2149 ntTSL 2 BASIC31.39■■■□□ 2.62
CCDC88BA6NC98 ZIC4-212ENST00000484399 1774 ntAPPRIS P1 TSL 2 BASIC31.39■■■□□ 2.62
CCDC88BA6NC98 SIGLEC16-201ENST00000599858 1437 ntBASIC31.39■■■□□ 2.62
CCDC88BA6NC98 NARFL-201ENST00000251588 2112 ntAPPRIS P1 TSL 1 (best) BASIC31.39■■■□□ 2.62
CCDC88BA6NC98 DBNL-213ENST00000452943 1513 ntTSL 2 BASIC31.39■■■□□ 2.62
CCDC88BA6NC98 PLA2G12A-202ENST00000502283 1189 ntAPPRIS ALT2 TSL 1 (best) BASIC31.39■■■□□ 2.62
CCDC88BA6NC98 LCE1E-203ENST00000619588 267 ntAPPRIS ALT2 TSL 5 BASIC31.39■■■□□ 2.62
CCDC88BA6NC98 AP003717.1-202ENST00000537019 1412 ntTSL 5 BASIC31.39■■■□□ 2.61
CCDC88BA6NC98 REEP2-201ENST00000254901 2099 ntAPPRIS P3 TSL 1 (best) BASIC31.39■■■□□ 2.61
CCDC88BA6NC98 CTNNBL1-204ENST00000405275 2076 ntTSL 5 BASIC31.39■■■□□ 2.61
CCDC88BA6NC98 TCTA-201ENST00000273590 2146 ntAPPRIS P1 TSL 1 (best) BASIC31.38■■■□□ 2.61
CCDC88BA6NC98 NAGPA-AS1-202ENST00000632058 2265 ntTSL 2 BASIC31.38■■■□□ 2.61
CCDC88BA6NC98 HLA-A-203ENST00000376809 1611 ntAPPRIS P1 BASIC31.38■■■□□ 2.61
CCDC88BA6NC98 GIPR-201ENST00000263281 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC31.38■■■□□ 2.61
CCDC88BA6NC98 P2RY6-204ENST00000393592 1515 ntAPPRIS P1 TSL 1 (best) BASIC31.38■■■□□ 2.61
CCDC88BA6NC98 AL096828.1-201ENST00000423020 542 ntTSL 4 BASIC31.38■■■□□ 2.61
CCDC88BA6NC98 NDUFA6-202ENST00000498737 1256 ntTSL 1 (best) BASIC31.38■■■□□ 2.61
CCDC88BA6NC98 LINC02123-201ENST00000514869 885 ntTSL 1 (best) BASIC31.38■■■□□ 2.61
CCDC88BA6NC98 MRNIP-205ENST00000518235 1244 ntAPPRIS ALT2 TSL 2 BASIC31.38■■■□□ 2.61
CCDC88BA6NC98 ERI1-203ENST00000519292 2107 ntAPPRIS P1 TSL 2 BASIC31.38■■■□□ 2.61
CCDC88BA6NC98 LHX5-AS1-201ENST00000551357 522 ntTSL 2 BASIC31.38■■■□□ 2.61
CCDC88BA6NC98 AC010522.1-205ENST00000598031 606 ntAPPRIS P1 TSL 3 BASIC31.38■■■□□ 2.61
CCDC88BA6NC98 NDUFA6-203ENST00000602404 1080 ntAPPRIS P1 TSL 1 (best) BASIC31.38■■■□□ 2.61
CCDC88BA6NC98 CR381653.1-203ENST00000625153 577 ntTSL 5 BASIC31.38■■■□□ 2.61
CCDC88BA6NC98 SERPINE2-206ENST00000447280 1716 ntTSL 2 BASIC31.38■■■□□ 2.61
CCDC88BA6NC98 ALKBH3-201ENST00000302708 1474 ntAPPRIS P1 TSL 1 (best) BASIC31.37■■■□□ 2.61
CCDC88BA6NC98 AC004832.3-202ENST00000439838 1470 ntAPPRIS P1 TSL 2 BASIC31.37■■■□□ 2.61
CCDC88BA6NC98 LCE1B-201ENST00000360090 1139 ntAPPRIS P1 BASIC31.37■■■□□ 2.61
CCDC88BA6NC98 CST3-201ENST00000376925 873 ntAPPRIS P1 TSL 1 (best) BASIC31.37■■■□□ 2.61
CCDC88BA6NC98 CD9-202ENST00000382515 1229 ntTSL 5 BASIC31.37■■■□□ 2.61
CCDC88BA6NC98 ZNF295-AS1-202ENST00000429739 783 ntTSL 1 (best) BASIC31.37■■■□□ 2.61
CCDC88BA6NC98 RPS27L-204ENST00000455271 923 ntTSL 1 (best) BASIC31.37■■■□□ 2.61
CCDC88BA6NC98 RNA5SP416-201ENST00000516838 111 ntBASIC31.37■■■□□ 2.61
CCDC88BA6NC98 CROCCP3-203ENST00000589964 255 ntTSL 3 BASIC31.37■■■□□ 2.61
CCDC88BA6NC98 TEX22-201ENST00000451127 2571 ntAPPRIS P1 TSL 2 BASIC31.37■■■□□ 2.61
CCDC88BA6NC98 LINC02138-201ENST00000378340 1326 ntTSL 2 BASIC31.37■■■□□ 2.61
Retrieved 100 of 98,524 protein–RNA pairs in 98.2 ms