Protein–RNA interactions for Protein: Q9ULL8

SHROOM4, Protein Shroom4, humanhuman

Predictions only

Length 1,493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4Q9ULL8 HSD17B8-203ENST00000374662 990 ntAPPRIS P1 TSL 1 (best) BASIC34.54■■■■□ 3.12
SHROOM4Q9ULL8 KIRREL3-AS3-201ENST00000404882 831 ntBASIC34.54■■■■□ 3.12
SHROOM4Q9ULL8 MRPL52-210ENST00000555345 895 ntTSL 2 BASIC34.54■■■■□ 3.12
SHROOM4Q9ULL8 RPS15-207ENST00000591032 550 ntTSL 3 BASIC34.54■■■■□ 3.12
SHROOM4Q9ULL8 CMTM4-201ENST00000330687 3414 ntTSL 1 (best) BASIC34.54■■■■□ 3.12
SHROOM4Q9ULL8 FGFR2-204ENST00000356226 3547 ntTSL 1 (best) BASIC34.54■■■■□ 3.12
SHROOM4Q9ULL8 GLB1-202ENST00000307377 2018 ntTSL 1 (best) BASIC34.54■■■■□ 3.12
SHROOM4Q9ULL8 FXYD6-211ENST00000539526 2132 ntAPPRIS P2 TSL 1 (best) BASIC34.54■■■■□ 3.12
SHROOM4Q9ULL8 LPCAT3-201ENST00000261407 2268 ntAPPRIS P1 TSL 1 (best) BASIC34.54■■■■□ 3.12
SHROOM4Q9ULL8 IGFBP3-210ENST00000613132 2412 ntTSL 5 BASIC34.54■■■■□ 3.12
SHROOM4Q9ULL8 SLC22A18-203ENST00000380574 1755 ntAPPRIS P1 TSL 1 (best) BASIC34.54■■■■□ 3.12
SHROOM4Q9ULL8 CCNA1-202ENST00000440264 1758 ntAPPRIS P1 TSL 2 BASIC34.54■■■■□ 3.12
SHROOM4Q9ULL8 RMND5B-201ENST00000313386 1929 ntAPPRIS P1 TSL 1 (best) BASIC34.54■■■■□ 3.12
SHROOM4Q9ULL8 METRNL-203ENST00000571814 1900 ntTSL 1 (best) BASIC34.54■■■■□ 3.12
SHROOM4Q9ULL8 PARD3-213ENST00000545260 5740 ntAPPRIS ALT2 TSL 1 (best) BASIC34.53■■■■□ 3.12
SHROOM4Q9ULL8 MAGEA6-201ENST00000329342 1740 ntAPPRIS P1 TSL 1 (best) BASIC34.53■■■■□ 3.12
SHROOM4Q9ULL8 MAGEA3-201ENST00000370278 1724 ntAPPRIS P1 TSL 1 (best) BASIC34.53■■■■□ 3.12
SHROOM4Q9ULL8 SPCS2-207ENST00000530257 612 ntTSL 3 BASIC34.53■■■■□ 3.12
SHROOM4Q9ULL8 ANKRD20A8P-203ENST00000641373 517 ntBASIC34.53■■■■□ 3.12
SHROOM4Q9ULL8 RBFOX1-204ENST00000422070 1684 ntTSL 2 BASIC34.53■■■■□ 3.12
SHROOM4Q9ULL8 MGAT3-201ENST00000341184 5062 ntAPPRIS P1 TSL 1 (best) BASIC34.53■■■■□ 3.12
SHROOM4Q9ULL8 AC013268.5-201ENST00000454928 1959 ntTSL 2 BASIC34.53■■■■□ 3.12
SHROOM4Q9ULL8 CD209-210ENST00000601951 1439 ntAPPRIS ALT2 TSL 1 (best) BASIC34.53■■■■□ 3.12
SHROOM4Q9ULL8 ILF3-217ENST00000589998 2622 ntTSL 2 BASIC34.52■■■■□ 3.12
SHROOM4Q9ULL8 C18orf32-201ENST00000318240 1128 ntAPPRIS P1 TSL 1 (best) BASIC34.52■■■■□ 3.12
SHROOM4Q9ULL8 METTL21A-202ENST00000406927 1103 ntAPPRIS P1 TSL 1 (best) BASIC34.52■■■■□ 3.12
SHROOM4Q9ULL8 RNF144A-AS1-205ENST00000439208 757 ntTSL 3 BASIC34.52■■■■□ 3.12
SHROOM4Q9ULL8 KIAA0930-215ENST00000496226 589 ntTSL 5 BASIC34.52■■■■□ 3.12
SHROOM4Q9ULL8 RBM14-RBM4-203ENST00000500635 829 ntTSL 2 BASIC34.52■■■■□ 3.12
SHROOM4Q9ULL8 NEURL4-202ENST00000399464 5200 ntAPPRIS P4 TSL 1 (best) BASIC34.52■■■■□ 3.12
SHROOM4Q9ULL8 USP21-201ENST00000289865 2195 ntAPPRIS P1 TSL 1 (best) BASIC34.52■■■■□ 3.12
SHROOM4Q9ULL8 CSF3-206ENST00000577675 1360 ntTSL 1 (best) BASIC34.52■■■■□ 3.12
SHROOM4Q9ULL8 CPEB2-202ENST00000345451 2013 ntAPPRIS ALT2 TSL 1 (best) BASIC34.52■■■■□ 3.12
SHROOM4Q9ULL8 CEP78-202ENST00000376597 2618 ntAPPRIS P4 TSL 1 (best) BASIC34.52■■■■□ 3.12
SHROOM4Q9ULL8 FAM99B-201ENST00000382166 1067 ntTSL 5 BASIC34.52■■■■□ 3.12
SHROOM4Q9ULL8 PMP22-202ENST00000395936 816 ntTSL 3 BASIC34.52■■■■□ 3.12
SHROOM4Q9ULL8 UPK3A-202ENST00000396082 627 ntAPPRIS ALT2 TSL 1 (best) BASIC34.52■■■■□ 3.12
SHROOM4Q9ULL8 AC136604.3-201ENST00000508188 429 ntTSL 3 BASIC34.52■■■■□ 3.12
SHROOM4Q9ULL8 AC026336.2-201ENST00000563922 763 ntTSL 2 BASIC34.52■■■■□ 3.12
SHROOM4Q9ULL8 AC016590.1-204ENST00000586442 813 ntTSL 5 BASIC34.52■■■■□ 3.12
SHROOM4Q9ULL8 TRAPPC12-202ENST00000382110 2483 ntAPPRIS P2 TSL 2 BASIC34.52■■■■□ 3.12
SHROOM4Q9ULL8 FAM129C-201ENST00000332386 2222 ntAPPRIS ALT2 TSL 1 (best) BASIC34.51■■■■□ 3.12
SHROOM4Q9ULL8 PPP1R3F-201ENST00000055335 3421 ntAPPRIS P1 TSL 2 BASIC34.51■■■■□ 3.12
SHROOM4Q9ULL8 FAM237A-203ENST00000543490 1376 ntAPPRIS P1 TSL 5 BASIC34.51■■■■□ 3.12
SHROOM4Q9ULL8 P2RY6-201ENST00000349767 1700 ntAPPRIS P1 TSL 2 BASIC34.51■■■■□ 3.12
SHROOM4Q9ULL8 HTRA4-201ENST00000302495 2095 ntAPPRIS P1 TSL 1 (best) BASIC34.51■■■■□ 3.12
SHROOM4Q9ULL8 ENDOV-225ENST00000522751 1475 ntTSL 5 BASIC34.51■■■■□ 3.12
SHROOM4Q9ULL8 RUNX3-202ENST00000338888 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC34.51■■■■□ 3.12
SHROOM4Q9ULL8 MSC-201ENST00000325509 2023 ntAPPRIS P1 TSL 1 (best) BASIC34.51■■■■□ 3.12
SHROOM4Q9ULL8 HSP90B1-210ENST00000614327 1338 ntTSL 1 (best) BASIC34.51■■■■□ 3.12
SHROOM4Q9ULL8 FOXC1-201ENST00000380874 3926 ntAPPRIS P1 BASIC34.51■■■■□ 3.11
SHROOM4Q9ULL8 KCNMA1-252ENST00000639120 2308 ntTSL 5 BASIC34.51■■■■□ 3.11
SHROOM4Q9ULL8 AOC3-204ENST00000591562 2522 ntTSL 2 BASIC34.51■■■■□ 3.11
SHROOM4Q9ULL8 GSTO1-202ENST00000369713 972 ntAPPRIS P1 TSL 1 (best) BASIC34.51■■■■□ 3.11
SHROOM4Q9ULL8 POM121L12-201ENST00000408890 1283 ntAPPRIS P1 BASIC34.51■■■■□ 3.11
SHROOM4Q9ULL8 AC002347.1-201ENST00000569543 541 ntBASIC34.51■■■■□ 3.11
SHROOM4Q9ULL8 RTBDN-213ENST00000592204 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC34.51■■■■□ 3.11
SHROOM4Q9ULL8 TRIM61-201ENST00000329314 1582 ntAPPRIS P1 TSL 1 (best) BASIC34.51■■■■□ 3.11
SHROOM4Q9ULL8 TYMS-203ENST00000323274 1662 ntAPPRIS P1 TSL 1 (best) BASIC34.5■■■■□ 3.11
SHROOM4Q9ULL8 TMEM216-201ENST00000334888 1306 ntAPPRIS ALT2 TSL 2 BASIC34.5■■■■□ 3.11
SHROOM4Q9ULL8 PRSS36-202ENST00000418068 2446 ntTSL 2 BASIC34.5■■■■□ 3.11
SHROOM4Q9ULL8 KRTCAP2-201ENST00000295682 552 ntAPPRIS P1 TSL 1 (best) BASIC34.5■■■■□ 3.11
SHROOM4Q9ULL8 NDUFAF2-201ENST00000296597 719 ntAPPRIS P1 TSL 1 (best) BASIC34.5■■■■□ 3.11
SHROOM4Q9ULL8 SMN1-201ENST00000351205 900 ntAPPRIS P3 TSL 1 (best) BASIC34.5■■■■□ 3.11
SHROOM4Q9ULL8 LCE1B-201ENST00000360090 1139 ntAPPRIS P1 BASIC34.5■■■■□ 3.11
SHROOM4Q9ULL8 TEX30-206ENST00000376032 1165 ntAPPRIS P1 TSL 1 (best) BASIC34.5■■■■□ 3.11
SHROOM4Q9ULL8 SMN2-201ENST00000380741 900 ntAPPRIS P4 TSL 1 (best) BASIC34.5■■■■□ 3.11
SHROOM4Q9ULL8 ROMO1-205ENST00000397416 288 ntAPPRIS P1 TSL 3 BASIC34.5■■■■□ 3.11
SHROOM4Q9ULL8 SHF-202ENST00000458022 1163 ntAPPRIS ALT2 TSL 2 BASIC34.5■■■■□ 3.11
SHROOM4Q9ULL8 SMN2-216ENST00000638794 846 ntAPPRIS ALT2 TSL 5 BASIC34.5■■■■□ 3.11
SHROOM4Q9ULL8 CRTAC1-203ENST00000370597 2890 ntTSL 1 (best) BASIC34.5■■■■□ 3.11
SHROOM4Q9ULL8 CADPS-203ENST00000383710 5471 ntAPPRIS ALT2 TSL 1 (best) BASIC34.5■■■■□ 3.11
SHROOM4Q9ULL8 WHAMM-201ENST00000286760 5101 ntAPPRIS P1 TSL 1 (best) BASIC34.5■■■■□ 3.11
SHROOM4Q9ULL8 C19orf25-203ENST00000585675 1837 ntAPPRIS P1 TSL 1 (best) BASIC34.49■■■■□ 3.11
SHROOM4Q9ULL8 PTN-201ENST00000348225 1614 ntAPPRIS P1 TSL 1 (best) BASIC34.49■■■■□ 3.11
SHROOM4Q9ULL8 HPCA-201ENST00000373467 1468 ntAPPRIS P1 TSL 1 (best) BASIC34.49■■■■□ 3.11
SHROOM4Q9ULL8 DPM3-203ENST00000368400 409 ntAPPRIS P1 TSL 1 (best) BASIC34.49■■■■□ 3.11
SHROOM4Q9ULL8 KRT18P3-201ENST00000451602 1288 ntBASIC34.49■■■■□ 3.11
SHROOM4Q9ULL8 SDHAP2-201ENST00000455183 2001 ntBASIC34.49■■■■□ 3.11
SHROOM4Q9ULL8 CORO1B-202ENST00000393893 1931 ntAPPRIS P1 TSL 5 BASIC34.49■■■■□ 3.11
SHROOM4Q9ULL8 ANKMY1-209ENST00000405523 1827 ntTSL 1 (best) BASIC34.49■■■■□ 3.11
SHROOM4Q9ULL8 TEAD4-201ENST00000358409 1637 ntTSL 1 (best) BASIC34.49■■■■□ 3.11
SHROOM4Q9ULL8 ZIM2-208ENST00000629319 2253 ntAPPRIS P1 TSL 5 BASIC34.49■■■■□ 3.11
SHROOM4Q9ULL8 LURAP1-201ENST00000371980 1854 ntAPPRIS P1 TSL 1 (best) BASIC34.49■■■■□ 3.11
SHROOM4Q9ULL8 TRABD2A-202ENST00000409133 1554 ntTSL 1 (best) BASIC34.48■■■■□ 3.11
SHROOM4Q9ULL8 WDR18-204ENST00000587001 1465 ntTSL 5 BASIC34.48■■■■□ 3.11
SHROOM4Q9ULL8 SUFU-201ENST00000369899 1839 ntTSL 1 (best) BASIC34.48■■■■□ 3.11
SHROOM4Q9ULL8 YTHDC2-207ENST00000515883 2629 ntTSL 1 (best) BASIC34.48■■■■□ 3.11
SHROOM4Q9ULL8 AQP8-201ENST00000219660 1359 ntAPPRIS P1 TSL 1 (best) BASIC34.48■■■■□ 3.11
SHROOM4Q9ULL8 SLC27A3-214ENST00000624995 2413 ntAPPRIS P2 TSL 1 (best) BASIC34.48■■■■□ 3.11
SHROOM4Q9ULL8 PF4-201ENST00000296029 604 ntAPPRIS P1 TSL 1 (best) BASIC34.48■■■■□ 3.11
SHROOM4Q9ULL8 AC132008.2-207ENST00000454517 770 ntBASIC34.48■■■■□ 3.11
SHROOM4Q9ULL8 HS6ST1P1-201ENST00000481504 1234 ntBASIC34.48■■■■□ 3.11
SHROOM4Q9ULL8 LAT-209ENST00000564277 921 ntAPPRIS ALT2 TSL 5 BASIC34.48■■■■□ 3.11
SHROOM4Q9ULL8 COQ7-208ENST00000568985 714 ntAPPRIS P3 TSL 2 BASIC34.48■■■■□ 3.11
SHROOM4Q9ULL8 DHRSX-201ENST00000334651 2571 ntAPPRIS P1 TSL 1 (best) BASIC34.48■■■■□ 3.11
SHROOM4Q9ULL8 UTP18-201ENST00000225298 1894 ntAPPRIS P1 TSL 1 (best) BASIC34.48■■■■□ 3.11
SHROOM4Q9ULL8 HNRNPDL-210ENST00000630827 1318 ntAPPRIS ALT2 TSL 5 BASIC34.48■■■■□ 3.11
SHROOM4Q9ULL8 KLF6-204ENST00000469435 2169 ntTSL 1 (best) BASIC34.48■■■■□ 3.11
SHROOM4Q9ULL8 ERLIN2-202ENST00000335171 1742 ntTSL 1 (best) BASIC34.48■■■■□ 3.11
Retrieved 100 of 98,524 protein–RNA pairs in 39.8 ms