Protein–RNA interactions for Protein: Q9ULB4

CDH9, Cadherin-9, humanhuman

Predictions only

Length 789 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH9Q9ULB4 LINC01315-202ENST00000424852 1142 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
CDH9Q9ULB4 AC246785.2-201ENST00000432512 513 ntBASIC19.23■□□□□ 0.67
CDH9Q9ULB4 AC234772.2-201ENST00000456532 375 ntTSL 3 BASIC19.23■□□□□ 0.67
CDH9Q9ULB4 VENTXP7-201ENST00000475503 772 ntBASIC19.23■□□□□ 0.67
CDH9Q9ULB4 LINC02199-203ENST00000510229 496 ntTSL 3 BASIC19.23■□□□□ 0.67
CDH9Q9ULB4 TFF3-204ENST00000518498 1109 ntAPPRIS P2 TSL 1 (best) BASIC19.23■□□□□ 0.67
CDH9Q9ULB4 ERI1-203ENST00000519292 2107 ntAPPRIS P1 TSL 2 BASIC19.23■□□□□ 0.67
CDH9Q9ULB4 LINC02237-202ENST00000521904 477 ntTSL 3 BASIC19.23■□□□□ 0.67
CDH9Q9ULB4 TOLLIP-AS1-201ENST00000530897 939 ntBASIC19.23■□□□□ 0.67
CDH9Q9ULB4 AC125616.1-201ENST00000540369 1015 ntTSL 3 BASIC19.23■□□□□ 0.67
CDH9Q9ULB4 AC079385.1-201ENST00000551505 570 ntTSL 4 BASIC19.23■□□□□ 0.67
CDH9Q9ULB4 AC012615.1-201ENST00000565797 1299 ntBASIC19.23■□□□□ 0.67
CDH9Q9ULB4 AC011840.4-201ENST00000578471 627 ntBASIC19.23■□□□□ 0.67
CDH9Q9ULB4 Z69720.1-201ENST00000601483 472 ntBASIC19.23■□□□□ 0.67
CDH9Q9ULB4 REXO2-220ENST00000611665 1158 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
CDH9Q9ULB4 Metazoa_SRP.104-201ENST00000622099 280 ntBASIC19.23■□□□□ 0.67
CDH9Q9ULB4 USF2-202ENST00000343550 1523 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
CDH9Q9ULB4 SDC1-203ENST00000403076 1523 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
CDH9Q9ULB4 PPM1B-201ENST00000282412 2606 ntAPPRIS P4 TSL 1 (best) BASIC19.23■□□□□ 0.67
CDH9Q9ULB4 P3H4-201ENST00000355468 2791 ntAPPRIS P2 TSL 2 BASIC19.23■□□□□ 0.67
CDH9Q9ULB4 FASTK-202ENST00000353841 1402 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
CDH9Q9ULB4 MAFG-201ENST00000357736 5040 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
CDH9Q9ULB4 NR1H2-210ENST00000598168 1915 ntAPPRIS ALT2 TSL 5 BASIC19.23■□□□□ 0.67
CDH9Q9ULB4 TMEM109-201ENST00000227525 2413 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
CDH9Q9ULB4 MARK2-208ENST00000508192 2924 ntAPPRIS P3 TSL 5 BASIC19.23■□□□□ 0.67
CDH9Q9ULB4 DGKI-202ENST00000424189 4163 ntAPPRIS ALT2 TSL 5 BASIC19.23■□□□□ 0.67
CDH9Q9ULB4 NFIB-208ENST00000397581 3318 ntTSL 5 BASIC19.23■□□□□ 0.67
CDH9Q9ULB4 GRM2-204ENST00000442933 2064 ntTSL 5 BASIC19.23■□□□□ 0.67
CDH9Q9ULB4 SENP6-201ENST00000327284 2700 ntTSL 2 BASIC19.23■□□□□ 0.67
CDH9Q9ULB4 TOR2A-205ENST00000463577 2211 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
CDH9Q9ULB4 TOP1MT-218ENST00000523676 1982 ntTSL 5 BASIC19.23■□□□□ 0.67
CDH9Q9ULB4 FAM198A-202ENST00000430121 3121 ntAPPRIS P2 TSL 5 BASIC19.23■□□□□ 0.67
CDH9Q9ULB4 SMARCC2-203ENST00000394023 4271 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
CDH9Q9ULB4 STARD3-201ENST00000336308 2132 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
CDH9Q9ULB4 POLD3-203ENST00000527458 2122 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
CDH9Q9ULB4 IFIH1-202ENST00000421365 1617 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
CDH9Q9ULB4 HCLS1-201ENST00000314583 2000 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
CDH9Q9ULB4 ABHD14B-204ENST00000461108 1397 ntTSL 2 BASIC19.22■□□□□ 0.67
CDH9Q9ULB4 FAM228B-210ENST00000615575 1357 ntAPPRIS P3 TSL 5 BASIC19.22■□□□□ 0.67
CDH9Q9ULB4 SERPINA4-201ENST00000298841 1784 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
CDH9Q9ULB4 DKK1-201ENST00000373970 1790 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
CDH9Q9ULB4 ZIC4-212ENST00000484399 1774 ntAPPRIS P1 TSL 2 BASIC19.22■□□□□ 0.67
CDH9Q9ULB4 ADCK5-201ENST00000308860 1949 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
CDH9Q9ULB4 GTPBP3-222ENST00000600625 2493 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
CDH9Q9ULB4 ADAP1-205ENST00000449296 2093 ntTSL 2 BASIC19.22■□□□□ 0.67
CDH9Q9ULB4 SNRPA1-201ENST00000254193 1055 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
CDH9Q9ULB4 S100A11-201ENST00000271638 594 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
CDH9Q9ULB4 KRT18P65-201ENST00000439811 1286 ntBASIC19.22■□□□□ 0.67
CDH9Q9ULB4 AC068472.1-201ENST00000474589 881 ntBASIC19.22■□□□□ 0.67
CDH9Q9ULB4 MRPL2-208ENST00000489623 570 ntTSL 2 BASIC19.22■□□□□ 0.67
CDH9Q9ULB4 AC079848.1-202ENST00000507924 444 ntTSL 3 BASIC19.22■□□□□ 0.67
CDH9Q9ULB4 VASH1-204ENST00000554743 1096 ntTSL 3 BASIC19.22■□□□□ 0.67
CDH9Q9ULB4 ANAPC11-204ENST00000571024 668 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
CDH9Q9ULB4 ANAPC11-218ENST00000582222 523 ntTSL 2 BASIC19.22■□□□□ 0.67
CDH9Q9ULB4 MIMT1-202ENST00000599641 1290 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
CDH9Q9ULB4 AL353801.3-201ENST00000609898 542 ntBASIC19.22■□□□□ 0.67
CDH9Q9ULB4 SCAMP4-213ENST00000621748 1172 ntAPPRIS P1 TSL 5 BASIC19.22■□□□□ 0.67
CDH9Q9ULB4 AP003356.1-202ENST00000517910 2770 ntTSL 2 BASIC19.22■□□□□ 0.67
CDH9Q9ULB4 TBC1D4-201ENST00000377625 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
CDH9Q9ULB4 NCK1-207ENST00000481752 1971 ntAPPRIS P1 TSL 5 BASIC19.22■□□□□ 0.67
CDH9Q9ULB4 C18orf21-205ENST00000592875 1581 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
CDH9Q9ULB4 EIF3B-202ENST00000397011 2966 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
CDH9Q9ULB4 TMED3-201ENST00000299705 1475 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
CDH9Q9ULB4 PDE9A-209ENST00000398227 1606 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
CDH9Q9ULB4 PHGDH-209ENST00000641074 1780 ntBASIC19.21■□□□□ 0.67
CDH9Q9ULB4 SPNS1-204ENST00000352260 1948 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
CDH9Q9ULB4 PAX1-205ENST00000613128 5352 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
CDH9Q9ULB4 TP53BP2-201ENST00000343537 4651 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
CDH9Q9ULB4 SMARCD3-202ENST00000356800 1669 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
CDH9Q9ULB4 SLC6A7-203ENST00000524041 2431 ntTSL 5 BASIC19.21■□□□□ 0.67
CDH9Q9ULB4 PFN1-201ENST00000225655 1291 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
CDH9Q9ULB4 SPIN2B-202ENST00000333933 1258 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
CDH9Q9ULB4 C1QC-203ENST00000374640 1163 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
CDH9Q9ULB4 STRADB-202ENST00000392249 2190 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
CDH9Q9ULB4 AL845331.1-201ENST00000424978 1190 ntBASIC19.21■□□□□ 0.67
CDH9Q9ULB4 RABL2B-209ENST00000435118 1126 ntAPPRIS P3 TSL 1 (best) BASIC19.21■□□□□ 0.67
CDH9Q9ULB4 DUSP5P1-201ENST00000441325 1139 ntBASIC19.21■□□□□ 0.67
CDH9Q9ULB4 PGAP2-206ENST00000459679 795 ntTSL 2 BASIC19.21■□□□□ 0.67
CDH9Q9ULB4 TNFSF13-208ENST00000483039 959 ntTSL 2 BASIC19.21■□□□□ 0.67
CDH9Q9ULB4 MTDH-203ENST00000519934 2184 ntTSL 5 BASIC19.21■□□□□ 0.67
CDH9Q9ULB4 ERVK13-1-203ENST00000564340 1449 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
CDH9Q9ULB4 MAZ-212ENST00000568282 1593 ntTSL 5 BASIC19.21■□□□□ 0.67
CDH9Q9ULB4 PRR29-207ENST00000580752 458 ntTSL 3 BASIC19.21■□□□□ 0.67
CDH9Q9ULB4 VAV1-204ENST00000596764 2775 ntTSL 2 BASIC19.21■□□□□ 0.67
CDH9Q9ULB4 TP53I11-223ENST00000627720 195 ntTSL 5 BASIC19.21■□□□□ 0.67
CDH9Q9ULB4 DCLK2-207ENST00000635524 2153 ntAPPRIS ALT2 TSL 5 BASIC19.21■□□□□ 0.67
CDH9Q9ULB4 CDH22-201ENST00000372262 3661 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
CDH9Q9ULB4 SH2B1-202ENST00000337120 6043 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
CDH9Q9ULB4 PDLIM4-201ENST00000253754 2282 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
CDH9Q9ULB4 KIF22-201ENST00000160827 2113 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
CDH9Q9ULB4 CAMKK2-207ENST00000404169 2116 ntAPPRIS P4 TSL 1 (best) BASIC19.21■□□□□ 0.67
CDH9Q9ULB4 NR1D2-201ENST00000312521 5258 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
CDH9Q9ULB4 AP5S1-201ENST00000246041 1960 ntAPPRIS P1 TSL 4 BASIC19.21■□□□□ 0.67
CDH9Q9ULB4 PSAP-205ENST00000610929 1969 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
CDH9Q9ULB4 NDOR1-203ENST00000427047 2315 ntTSL 2 BASIC19.2■□□□□ 0.66
CDH9Q9ULB4 CARNS1-205ENST00000531040 2968 ntTSL 5 BASIC19.2■□□□□ 0.66
CDH9Q9ULB4 MSC-201ENST00000325509 2023 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
CDH9Q9ULB4 SIX5-201ENST00000317578 3318 ntAPPRIS P2 TSL 1 (best) BASIC19.2■□□□□ 0.66
CDH9Q9ULB4 ATP1B1-201ENST00000367815 1883 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
CDH9Q9ULB4 AHCYL1-203ENST00000393614 4313 ntTSL 2 BASIC19.2■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 15.6 ms