Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 AQP12A-201ENST00000337801 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC17.97■□□□□ 0.47
VPS13AQ96RL7 CD82-202ENST00000342935 967 ntTSL 5 BASIC17.97■□□□□ 0.47
VPS13AQ96RL7 RPL13P5-203ENST00000421824 845 ntTSL 3 BASIC17.97■□□□□ 0.47
VPS13AQ96RL7 AC002472.2-201ENST00000442739 958 ntBASIC17.97■□□□□ 0.47
VPS13AQ96RL7 STT3A-AS1-201ENST00000530526 429 ntTSL 3 BASIC17.97■□□□□ 0.47
VPS13AQ96RL7 AC243562.3-201ENST00000559866 1212 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
VPS13AQ96RL7 AJ003147.2-201ENST00000576468 629 ntTSL 3 BASIC17.97■□□□□ 0.47
VPS13AQ96RL7 RELB-202ENST00000505236 2219 ntAPPRIS ALT2 TSL 5 BASIC17.97■□□□□ 0.47
VPS13AQ96RL7 RBM34-201ENST00000408888 2054 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
VPS13AQ96RL7 VGLL4-210ENST00000426568 1428 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
VPS13AQ96RL7 NRXN1-226ENST00000626899 2543 ntTSL 2 BASIC17.97■□□□□ 0.47
VPS13AQ96RL7 HPS6-201ENST00000299238 2649 ntAPPRIS P1 BASIC17.97■□□□□ 0.47
VPS13AQ96RL7 AC055811.2-201ENST00000427497 1693 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
VPS13AQ96RL7 KCNK7-204ENST00000394217 1372 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
VPS13AQ96RL7 NQO2-203ENST00000380441 1021 ntTSL 5 BASIC17.97■□□□□ 0.47
VPS13AQ96RL7 C6orf226-201ENST00000408925 552 ntAPPRIS P1 BASIC17.97■□□□□ 0.47
VPS13AQ96RL7 AC092474.2-201ENST00000424288 719 ntBASIC17.97■□□□□ 0.47
VPS13AQ96RL7 LINC00351-201ENST00000424926 911 ntTSL 3 BASIC17.97■□□□□ 0.47
VPS13AQ96RL7 CPNE7-201ENST00000268720 2657 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
VPS13AQ96RL7 ZNF517-202ENST00000525105 1383 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
VPS13AQ96RL7 UPP1-201ENST00000331803 1932 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
VPS13AQ96RL7 GSTZ1-202ENST00000349555 867 ntTSL 2 BASIC17.97■□□□□ 0.47
VPS13AQ96RL7 RNF144A-AS1-205ENST00000439208 757 ntTSL 3 BASIC17.97■□□□□ 0.47
VPS13AQ96RL7 MEG3-211ENST00000452514 461 ntTSL 3 BASIC17.97■□□□□ 0.47
VPS13AQ96RL7 AP000442.1-201ENST00000533552 769 ntTSL 5 BASIC17.97■□□□□ 0.47
VPS13AQ96RL7 HIST4H4-204ENST00000539745 577 ntAPPRIS P1 BASIC17.97■□□□□ 0.47
VPS13AQ96RL7 TMEM220-AS1-202ENST00000580899 561 ntTSL 4 BASIC17.97■□□□□ 0.47
VPS13AQ96RL7 HYAL1-203ENST00000395143 1522 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
VPS13AQ96RL7 FIBCD1-201ENST00000372337 1868 ntTSL 5 BASIC17.97■□□□□ 0.47
VPS13AQ96RL7 MATN4-202ENST00000360607 2127 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
VPS13AQ96RL7 NFYC-AS1-201ENST00000606277 1687 ntBASIC17.96■□□□□ 0.47
VPS13AQ96RL7 MOK-201ENST00000361847 1940 ntAPPRIS P3 TSL 1 (best) BASIC17.96■□□□□ 0.47
VPS13AQ96RL7 P2RY6-201ENST00000349767 1700 ntAPPRIS P1 TSL 2 BASIC17.96■□□□□ 0.47
VPS13AQ96RL7 RUSC1-214ENST00000490373 1700 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
VPS13AQ96RL7 DPH1-201ENST00000263083 2221 ntAPPRIS P2 TSL 1 (best) BASIC17.96■□□□□ 0.47
VPS13AQ96RL7 TNNT3-203ENST00000381557 1019 ntAPPRIS ALT2 TSL 5 BASIC17.96■□□□□ 0.47
VPS13AQ96RL7 FAM221A-202ENST00000409192 888 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
VPS13AQ96RL7 AC015922.1-201ENST00000421102 1152 ntBASIC17.96■□□□□ 0.47
VPS13AQ96RL7 GCHFR-204ENST00000559445 626 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
VPS13AQ96RL7 MIR4745-201ENST00000577608 62 ntBASIC17.96■□□□□ 0.47
VPS13AQ96RL7 SDCCAG3P1-201ENST00000589292 1150 ntBASIC17.96■□□□□ 0.47
VPS13AQ96RL7 HOXA10-201ENST00000283921 2541 ntAPPRIS P2 TSL 1 (best) BASIC17.96■□□□□ 0.47
VPS13AQ96RL7 U2AF2-202ENST00000450554 3022 ntAPPRIS ALT1 TSL 1 (best) BASIC17.96■□□□□ 0.47
VPS13AQ96RL7 MMP28-201ENST00000605424 1928 ntAPPRIS P3 TSL 1 (best) BASIC17.96■□□□□ 0.47
VPS13AQ96RL7 LRP8-204ENST00000371454 3322 ntAPPRIS ALT2 TSL 1 (best) BASIC17.96■□□□□ 0.47
VPS13AQ96RL7 AC138969.1-205ENST00000381497 1552 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
VPS13AQ96RL7 RBM14-RBM4-201ENST00000412278 1566 ntAPPRIS P1 TSL 2 BASIC17.96■□□□□ 0.47
VPS13AQ96RL7 CFC1-202ENST00000615342 1554 ntTSL 5 BASIC17.96■□□□□ 0.47
VPS13AQ96RL7 CHRNB2-205ENST00000637900 2390 ntAPPRIS ALT1 TSL 5 BASIC17.96■□□□□ 0.47
VPS13AQ96RL7 AC131097.3-202ENST00000439270 331 ntTSL 5 BASIC17.96■□□□□ 0.47
VPS13AQ96RL7 SEC24B-AS1-203ENST00000505895 800 ntTSL 4 BASIC17.96■□□□□ 0.47
VPS13AQ96RL7 MRVI1-AS1-203ENST00000529979 784 ntTSL 3 BASIC17.96■□□□□ 0.47
VPS13AQ96RL7 AL390955.2-201ENST00000603032 514 ntBASIC17.96■□□□□ 0.47
VPS13AQ96RL7 HSD11B1L-223ENST00000616276 1580 ntAPPRIS ALT2 TSL 5 BASIC17.96■□□□□ 0.47
VPS13AQ96RL7 ZNF655-202ENST00000320583 1601 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
VPS13AQ96RL7 PRICKLE4-204ENST00000458694 1646 ntAPPRIS P2 TSL 5 BASIC17.96■□□□□ 0.47
VPS13AQ96RL7 Z98044.1-201ENST00000632503 1764 ntBASIC17.96■□□□□ 0.47
VPS13AQ96RL7 DUSP26-203ENST00000523956 1373 ntAPPRIS P1 TSL 5 BASIC17.96■□□□□ 0.46
VPS13AQ96RL7 MCU-201ENST00000357157 2874 ntTSL 1 (best) BASIC17.96■□□□□ 0.46
VPS13AQ96RL7 MTHFSD-203ENST00000543303 1207 ntAPPRIS ALT2 TSL 1 (best) BASIC17.95■□□□□ 0.46
VPS13AQ96RL7 AL359317.2-203ENST00000557409 538 ntTSL 4 BASIC17.95■□□□□ 0.46
VPS13AQ96RL7 AC108449.3-201ENST00000560714 585 ntTSL 3 BASIC17.95■□□□□ 0.46
VPS13AQ96RL7 AC099518.3-201ENST00000564808 809 ntAPPRIS P5 TSL 4 BASIC17.95■□□□□ 0.46
VPS13AQ96RL7 MTHFSD-220ENST00000634347 1207 ntAPPRIS P3 TSL 1 (best) BASIC17.95■□□□□ 0.46
VPS13AQ96RL7 BRMS1L-201ENST00000216807 2657 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
VPS13AQ96RL7 AK3-202ENST00000381809 2736 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
VPS13AQ96RL7 C8orf46-215ENST00000522977 1347 ntTSL 2 BASIC17.95■□□□□ 0.46
VPS13AQ96RL7 CAMKV-205ENST00000467248 1688 ntTSL 2 BASIC17.95■□□□□ 0.46
VPS13AQ96RL7 FAM9A-202ENST00000543214 1544 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
VPS13AQ96RL7 KLK5-201ENST00000336334 1563 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
VPS13AQ96RL7 HCCS-202ENST00000380762 1072 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
VPS13AQ96RL7 SH3TC1-202ENST00000382521 829 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
VPS13AQ96RL7 ZNF655-218ENST00000454654 571 ntTSL 4 BASIC17.95■□□□□ 0.46
VPS13AQ96RL7 CDKN2A-209ENST00000498628 926 ntTSL 2 BASIC17.95■□□□□ 0.46
VPS13AQ96RL7 HOXC-AS3-202ENST00000513165 533 ntTSL 3 BASIC17.95■□□□□ 0.46
VPS13AQ96RL7 PUS1-205ENST00000535067 838 ntTSL 3 BASIC17.95■□□□□ 0.46
VPS13AQ96RL7 FAM227B-204ENST00000558594 1139 ntAPPRIS ALT2 TSL 5 BASIC17.95■□□□□ 0.46
VPS13AQ96RL7 NKAPP1-205ENST00000585790 367 ntBASIC17.95■□□□□ 0.46
VPS13AQ96RL7 GPR89P-201ENST00000407924 1495 ntBASIC17.95■□□□□ 0.46
VPS13AQ96RL7 IRX1P1-201ENST00000438849 1838 ntBASIC17.95■□□□□ 0.46
VPS13AQ96RL7 TUSC3-204ENST00000506802 1546 ntTSL 5 BASIC17.95■□□□□ 0.46
VPS13AQ96RL7 NECAB3-202ENST00000375238 1942 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
VPS13AQ96RL7 HSPA1A-202ENST00000608703 1909 ntTSL 2 BASIC17.95■□□□□ 0.46
VPS13AQ96RL7 TMEM189-201ENST00000371650 2222 ntAPPRIS ALT1 TSL 1 (best) BASIC17.95■□□□□ 0.46
VPS13AQ96RL7 FGFBP2-201ENST00000259989 1168 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
VPS13AQ96RL7 NUDT4P1-201ENST00000322209 1206 ntAPPRIS P1 BASIC17.95■□□□□ 0.46
VPS13AQ96RL7 AC104135.1-201ENST00000418001 763 ntTSL 5 BASIC17.95■□□□□ 0.46
VPS13AQ96RL7 TMEM161B-AS1-202ENST00000501715 1101 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
VPS13AQ96RL7 AP000344.2-201ENST00000512987 629 ntBASIC17.95■□□□□ 0.46
VPS13AQ96RL7 KLK12-203ENST00000525263 1077 ntAPPRIS ALT2 TSL 1 (best) BASIC17.95■□□□□ 0.46
VPS13AQ96RL7 RIMS4-202ENST00000541604 1036 ntAPPRIS ALT1 TSL 1 (best) BASIC17.95■□□□□ 0.46
VPS13AQ96RL7 AC073592.4-201ENST00000623827 446 ntBASIC17.95■□□□□ 0.46
VPS13AQ96RL7 TRIP6-201ENST00000200457 1942 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
VPS13AQ96RL7 SCUBE1-201ENST00000290460 2258 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
VPS13AQ96RL7 AC112777.1-201ENST00000540175 1423 ntBASIC17.94■□□□□ 0.46
VPS13AQ96RL7 PIP4K2A-206ENST00000545335 1436 ntTSL 2 BASIC17.94■□□□□ 0.46
VPS13AQ96RL7 KRT8P32-201ENST00000512863 1461 ntBASIC17.94■□□□□ 0.46
VPS13AQ96RL7 LTC4S-201ENST00000292596 666 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
VPS13AQ96RL7 UFL1-AS1-201ENST00000430796 548 ntTSL 3 BASIC17.94■□□□□ 0.46
VPS13AQ96RL7 SLC25A36-204ENST00000453248 1040 ntTSL 2 BASIC17.94■□□□□ 0.46
Retrieved 100 of 98,524 protein–RNA pairs in 27.4 ms