Protein–RNA interactions for Protein: Q96QK1

VPS35, Vacuolar protein sorting-associated protein 35, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35Q96QK1 ASIC3-202ENST00000349064 1895 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
VPS35Q96QK1 AC027097.1-202ENST00000592201 1954 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
VPS35Q96QK1 RTEL1-204ENST00000370003 2273 ntTSL 2 BASIC18.11■□□□□ 0.49
VPS35Q96QK1 FBXL20-202ENST00000394294 2309 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
VPS35Q96QK1 ST3GAL3-206ENST00000351035 2377 ntTSL 5 BASIC18.11■□□□□ 0.49
VPS35Q96QK1 TMEM109-201ENST00000227525 2413 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
VPS35Q96QK1 EHMT1-204ENST00000462484 2707 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
VPS35Q96QK1 TDRKH-203ENST00000368824 2824 ntAPPRIS P2 TSL 1 (best) BASIC18.11■□□□□ 0.49
VPS35Q96QK1 MARK2-201ENST00000350490 2903 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
VPS35Q96QK1 MIB2-231ENST00000518681 3116 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
VPS35Q96QK1 ETS1-208ENST00000535549 4594 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
VPS35Q96QK1 UVSSA-207ENST00000511216 2927 ntAPPRIS P2 TSL 1 (best) BASIC18.1■□□□□ 0.49
VPS35Q96QK1 USP39-201ENST00000323701 2177 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
VPS35Q96QK1 HOXC11-201ENST00000243082 2039 ntTSL 3 BASIC18.1■□□□□ 0.49
VPS35Q96QK1 ACSM2A-201ENST00000219054 1988 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
VPS35Q96QK1 ZBTB8A-201ENST00000316459 1943 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
VPS35Q96QK1 FBXO44-201ENST00000251546 1896 ntTSL 2 BASIC18.1■□□□□ 0.49
VPS35Q96QK1 IRAK3-202ENST00000457197 1853 ntTSL 2 BASIC18.1■□□□□ 0.49
VPS35Q96QK1 RUNX2-202ENST00000371432 5487 ntAPPRIS ALT2 TSL 5 BASIC18.1■□□□□ 0.49
VPS35Q96QK1 LIN28B-AS1-203ENST00000636682 1797 ntTSL 3 BASIC18.1■□□□□ 0.49
VPS35Q96QK1 AL162741.1-201ENST00000565563 1558 ntBASIC18.1■□□□□ 0.49
VPS35Q96QK1 ZNF667-AS1-201ENST00000585445 1521 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
VPS35Q96QK1 MAP2K5-202ENST00000340972 1491 ntTSL 2 BASIC18.1■□□□□ 0.49
VPS35Q96QK1 TMPRSS12-201ENST00000398458 1450 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
VPS35Q96QK1 CD209-210ENST00000601951 1439 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
VPS35Q96QK1 RPA2-201ENST00000313433 1237 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
VPS35Q96QK1 TNFRSF10C-202ENST00000397703 1242 ntTSL 2 BASIC18.1■□□□□ 0.49
VPS35Q96QK1 ISOC2-202ENST00000425675 998 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
VPS35Q96QK1 KRT18P48-201ENST00000434763 852 ntBASIC18.1■□□□□ 0.49
VPS35Q96QK1 AC113404.2-201ENST00000507884 177 ntBASIC18.1■□□□□ 0.49
VPS35Q96QK1 ENDOV-202ENST00000517295 908 ntTSL 3 BASIC18.1■□□□□ 0.49
VPS35Q96QK1 AC099518.3-201ENST00000564808 809 ntAPPRIS P5 TSL 4 BASIC18.1■□□□□ 0.49
VPS35Q96QK1 ADGRD2-201ENST00000334810 3244 ntAPPRIS P1 TSL 5 BASIC18.1■□□□□ 0.49
VPS35Q96QK1 MIDN-206ENST00000591446 3243 ntAPPRIS P2 TSL 1 (best) BASIC18.1■□□□□ 0.49
VPS35Q96QK1 OTUD1-201ENST00000376495 2933 ntAPPRIS P1 BASIC18.1■□□□□ 0.49
VPS35Q96QK1 MSL1-202ENST00000398532 4707 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
VPS35Q96QK1 SCARF1-202ENST00000348987 2619 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
VPS35Q96QK1 LARGE2-206ENST00000529052 2459 ntAPPRIS ALT2 TSL 2 BASIC18.1■□□□□ 0.49
VPS35Q96QK1 CDK13-201ENST00000181839 7298 ntAPPRIS P4 TSL 1 (best) BASIC18.1■□□□□ 0.49
VPS35Q96QK1 PDLIM4-201ENST00000253754 2282 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
VPS35Q96QK1 MZT1-201ENST00000377818 2299 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
VPS35Q96QK1 FAM72C-202ENST00000584486 2297 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
VPS35Q96QK1 AC090164.3-201ENST00000610780 2143 ntBASIC18.1■□□□□ 0.49
VPS35Q96QK1 THAP3-203ENST00000377627 2053 ntAPPRIS P3 TSL 2 BASIC18.1■□□□□ 0.49
VPS35Q96QK1 RNF146-213ENST00000610153 2070 ntAPPRIS ALT1 TSL 2 BASIC18.1■□□□□ 0.49
VPS35Q96QK1 AMDHD2-203ENST00000413459 2049 ntTSL 2 BASIC18.1■□□□□ 0.49
VPS35Q96QK1 SEPHS1-206ENST00000545675 2988 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
VPS35Q96QK1 ATRIP-202ENST00000346691 2509 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
VPS35Q96QK1 FRRS1L-201ENST00000561981 8197 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
VPS35Q96QK1 TMEM155-201ENST00000337677 2313 ntAPPRIS P2 TSL 1 (best) BASIC18.09■□□□□ 0.49
VPS35Q96QK1 METTL5-207ENST00000410097 1370 ntTSL 2 BASIC18.09■□□□□ 0.49
VPS35Q96QK1 HYOU1-212ENST00000532519 2162 ntTSL 5 BASIC18.09■□□□□ 0.49
VPS35Q96QK1 DGUOK-201ENST00000264093 1144 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
VPS35Q96QK1 DGUOK-202ENST00000348222 880 ntTSL 2 BASIC18.09■□□□□ 0.49
VPS35Q96QK1 CD1E-210ENST00000368165 1003 ntAPPRIS ALT2 TSL 1 (best) BASIC18.09■□□□□ 0.49
VPS35Q96QK1 MADCAM1-203ENST00000382683 603 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
VPS35Q96QK1 CD1E-214ENST00000452291 745 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
VPS35Q96QK1 LINC02106-201ENST00000506534 606 ntTSL 2 BASIC18.09■□□□□ 0.49
VPS35Q96QK1 NAA38-203ENST00000575071 553 ntTSL 2 BASIC18.09■□□□□ 0.49
VPS35Q96QK1 LIMD2-211ENST00000583211 1298 ntTSL 3 BASIC18.09■□□□□ 0.49
VPS35Q96QK1 FXYD7-203ENST00000586063 456 ntAPPRIS ALT2 TSL 3 BASIC18.09■□□□□ 0.49
VPS35Q96QK1 MIR2117HG-201ENST00000588060 506 ntTSL 4 BASIC18.09■□□□□ 0.49
VPS35Q96QK1 DGUOK-208ENST00000629438 1029 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
VPS35Q96QK1 ARHGEF28-203ENST00000426542 6118 ntAPPRIS ALT2 TSL 1 (best) BASIC18.09■□□□□ 0.49
VPS35Q96QK1 NOMO3-202ENST00000399336 4356 ntAPPRIS P2 TSL 1 (best) BASIC18.09■□□□□ 0.49
VPS35Q96QK1 CDC25B-202ENST00000340833 1978 ntAPPRIS ALT2 TSL 1 (best) BASIC18.09■□□□□ 0.49
VPS35Q96QK1 PGP-201ENST00000333503 2727 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
VPS35Q96QK1 FIBCD1-201ENST00000372337 1868 ntTSL 5 BASIC18.09■□□□□ 0.49
VPS35Q96QK1 ZBTB4-201ENST00000311403 5956 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
VPS35Q96QK1 SPSB1-201ENST00000328089 3120 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
VPS35Q96QK1 AC087500.1-202ENST00000571689 1715 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
VPS35Q96QK1 ATP2A2-201ENST00000308664 4453 ntAPPRIS ALT1 TSL 1 (best) BASIC18.09■□□□□ 0.49
VPS35Q96QK1 KRT13-201ENST00000246635 1699 ntAPPRIS P4 TSL 1 (best) BASIC18.09■□□□□ 0.49
VPS35Q96QK1 C21orf59-201ENST00000290155 1692 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
VPS35Q96QK1 RNPS1-219ENST00000566397 1685 ntTSL 2 BASIC18.09■□□□□ 0.49
VPS35Q96QK1 PDE9A-209ENST00000398227 1606 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
VPS35Q96QK1 LINC01126-201ENST00000623515 1646 ntBASIC18.09■□□□□ 0.49
VPS35Q96QK1 PCDHB2-202ENST00000622947 2231 ntTSL 1 (best) BASIC18.08■□□□□ 0.49
VPS35Q96QK1 STRADB-202ENST00000392249 2190 ntTSL 1 (best) BASIC18.08■□□□□ 0.49
VPS35Q96QK1 STARD10-218ENST00000543304 1513 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
VPS35Q96QK1 SPACA1-201ENST00000237201 1499 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
VPS35Q96QK1 AC099343.3-201ENST00000605834 2503 ntBASIC18.08■□□□□ 0.49
VPS35Q96QK1 NUMBL-202ENST00000540131 1931 ntAPPRIS ALT2 TSL 2 BASIC18.08■□□□□ 0.49
VPS35Q96QK1 ADGRA3-202ENST00000334304 4566 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
VPS35Q96QK1 MMAB-204ENST00000537236 1342 ntTSL 3 BASIC18.08■□□□□ 0.49
VPS35Q96QK1 BET1L-202ENST00000332865 533 ntTSL 5 BASIC18.08■□□□□ 0.48
VPS35Q96QK1 TNNI3-201ENST00000344887 840 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
VPS35Q96QK1 DMKN-212ENST00000443640 842 ntAPPRIS ALT2 TSL 5 BASIC18.08■□□□□ 0.48
VPS35Q96QK1 PTK2-216ENST00000519881 863 ntTSL 3 BASIC18.08■□□□□ 0.48
VPS35Q96QK1 AP005717.1-202ENST00000523563 419 ntTSL 3 BASIC18.08■□□□□ 0.48
VPS35Q96QK1 SSSCA1-206ENST00000531405 879 ntTSL 2 BASIC18.08■□□□□ 0.48
VPS35Q96QK1 PAQR4-204ENST00000574988 869 ntTSL 2 BASIC18.08■□□□□ 0.48
VPS35Q96QK1 AC116407.4-201ENST00000623319 1061 ntBASIC18.08■□□□□ 0.48
VPS35Q96QK1 CLN8-211ENST00000636934 1790 ntTSL 5 BASIC18.08■□□□□ 0.48
VPS35Q96QK1 AK3-202ENST00000381809 2736 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
VPS35Q96QK1 CA7-202ENST00000394069 1713 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
VPS35Q96QK1 RPL32-202ENST00000396953 1734 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
VPS35Q96QK1 FAM189B-204ENST00000368368 2609 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
VPS35Q96QK1 IQCJ-SCHIP1-207ENST00000638749 2633 ntAPPRIS P3 TSL 1 (best) BASIC18.08■□□□□ 0.48
VPS35Q96QK1 LRRC27-203ENST00000368613 2113 ntAPPRIS P3 TSL 1 (best) BASIC18.08■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 23.8 ms