Protein–RNA interactions for Protein: Q96BD8

SKA1, Spindle and kinetochore-associated protein 1, humanhuman

Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1Q96BD8 EIF3B-201ENST00000360876 3055 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
SKA1Q96BD8 BSCL2-201ENST00000278893 1364 ntAPPRIS ALT2 TSL 2 BASIC18.71■□□□□ 0.59
SKA1Q96BD8 RIOX2-201ENST00000333396 5347 ntAPPRIS ALT1 TSL 1 (best) BASIC18.71■□□□□ 0.59
SKA1Q96BD8 CARMIL2-201ENST00000334583 4687 ntAPPRIS P3 TSL 1 (best) BASIC18.71■□□□□ 0.59
SKA1Q96BD8 ZNF211-203ENST00000299871 2577 ntAPPRIS ALT2 TSL 3 BASIC18.71■□□□□ 0.59
SKA1Q96BD8 WIPF1-206ENST00000409891 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.59
SKA1Q96BD8 AL390860.1-201ENST00000449298 1541 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
SKA1Q96BD8 HOXC10-201ENST00000303460 1936 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
SKA1Q96BD8 CTNNBL1-204ENST00000405275 2076 ntTSL 5 BASIC18.71■□□□□ 0.59
SKA1Q96BD8 AC008764.6-201ENST00000595909 2069 ntBASIC18.71■□□□□ 0.59
SKA1Q96BD8 RAP1GDS1-201ENST00000264572 1686 ntTSL 5 BASIC18.71■□□□□ 0.59
SKA1Q96BD8 CALHM3-201ENST00000369783 1652 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
SKA1Q96BD8 IFT27-201ENST00000340630 1113 ntAPPRIS P3 TSL 1 (best) BASIC18.71■□□□□ 0.59
SKA1Q96BD8 SLX1A-202ENST00000345535 762 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.59
SKA1Q96BD8 SLX1B-202ENST00000351581 762 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.59
SKA1Q96BD8 INSL3-202ENST00000379695 899 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
SKA1Q96BD8 ELOB-202ENST00000409477 997 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
SKA1Q96BD8 AP000347.1-209ENST00000437294 557 ntTSL 4 BASIC18.71■□□□□ 0.59
SKA1Q96BD8 C5orf49-202ENST00000509627 1020 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.59
SKA1Q96BD8 AL691432.3-201ENST00000621860 400 ntBASIC18.71■□□□□ 0.59
SKA1Q96BD8 SETD3-209ENST00000630307 1281 ntTSL 5 BASIC18.71■□□□□ 0.59
SKA1Q96BD8 IRF7-202ENST00000348655 1801 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.59
SKA1Q96BD8 RAB29-205ENST00000446390 1441 ntTSL 2 BASIC18.71■□□□□ 0.59
SKA1Q96BD8 LYNX1-204ENST00000614491 4708 ntAPPRIS P1 TSL 2 BASIC18.71■□□□□ 0.59
SKA1Q96BD8 BRMS1L-201ENST00000216807 2657 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
SKA1Q96BD8 SNAP23-201ENST00000249647 2687 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
SKA1Q96BD8 GDF5OS-201ENST00000374375 1734 ntAPPRIS P1 TSL 2 BASIC18.71■□□□□ 0.59
SKA1Q96BD8 GATB-213ENST00000515812 1893 ntTSL 5 BASIC18.71■□□□□ 0.59
SKA1Q96BD8 NUDT16L1-201ENST00000304301 1349 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
SKA1Q96BD8 MXRA8-209ENST00000477278 2728 ntTSL 5 BASIC18.71■□□□□ 0.59
SKA1Q96BD8 IL15-201ENST00000296545 2472 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.58
SKA1Q96BD8 SSUH2-202ENST00000341795 1799 ntAPPRIS P3 TSL 1 (best) BASIC18.7■□□□□ 0.58
SKA1Q96BD8 HSPA4-205ENST00000617074 2358 ntTSL 5 BASIC18.7■□□□□ 0.58
SKA1Q96BD8 MAPKAPK3-201ENST00000357955 2500 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
SKA1Q96BD8 JAKMIP1-208ENST00000637373 1362 ntTSL 5 BASIC18.7■□□□□ 0.58
SKA1Q96BD8 PNKP-224ENST00000631020 1545 ntTSL 5 BASIC18.7■□□□□ 0.58
SKA1Q96BD8 UBQLN4P1-201ENST00000461599 1801 ntBASIC18.7■□□□□ 0.58
SKA1Q96BD8 AC020763.4-201ENST00000623414 4170 ntBASIC18.7■□□□□ 0.58
SKA1Q96BD8 TREX2-203ENST00000338525 2116 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
SKA1Q96BD8 ZNF454-202ENST00000519564 2142 ntAPPRIS P1 TSL 2 BASIC18.7■□□□□ 0.58
SKA1Q96BD8 PXMP4-201ENST00000217398 979 ntTSL 2 BASIC18.7■□□□□ 0.58
SKA1Q96BD8 DUSP1-201ENST00000239223 2019 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
SKA1Q96BD8 CDHR4-201ENST00000343366 1188 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
SKA1Q96BD8 FAM19A3-201ENST00000361886 1056 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
SKA1Q96BD8 SPEG-204ENST00000396689 1274 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
SKA1Q96BD8 SIGIRR-202ENST00000397632 1598 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
SKA1Q96BD8 GRAMD4P1-201ENST00000435181 1110 ntBASIC18.7■□□□□ 0.58
SKA1Q96BD8 AK2-204ENST00000467905 880 ntAPPRIS ALT1 TSL 2 BASIC18.7■□□□□ 0.58
SKA1Q96BD8 AL162258.2-202ENST00000469931 831 ntTSL 5 BASIC18.7■□□□□ 0.58
SKA1Q96BD8 AP003396.1-201ENST00000501918 507 ntTSL 5 BASIC18.7■□□□□ 0.58
SKA1Q96BD8 PTPRK-218ENST00000525459 1722 ntTSL 2 BASIC18.7■□□□□ 0.58
SKA1Q96BD8 AC087623.2-201ENST00000528407 534 ntTSL 4 BASIC18.7■□□□□ 0.58
SKA1Q96BD8 ANKRD34C-AS1-203ENST00000559225 528 ntTSL 4 BASIC18.7■□□□□ 0.58
SKA1Q96BD8 LINC00910-203ENST00000587874 544 ntTSL 4 BASIC18.7■□□□□ 0.58
SKA1Q96BD8 AC010463.1-201ENST00000596542 1207 ntAPPRIS P1 TSL 2 BASIC18.7■□□□□ 0.58
SKA1Q96BD8 ABO-203ENST00000611156 1577 ntAPPRIS ALT2 TSL 5 BASIC18.7■□□□□ 0.58
SKA1Q96BD8 AC083849.1-201ENST00000615227 514 ntBASIC18.7■□□□□ 0.58
SKA1Q96BD8 ZNF534-205ENST00000617900 1085 ntTSL 2 BASIC18.7■□□□□ 0.58
SKA1Q96BD8 PTENP1-AS-201ENST00000627688 873 ntTSL 5 BASIC18.7■□□□□ 0.58
SKA1Q96BD8 CCNI2-201ENST00000378731 2355 ntAPPRIS P3 TSL 1 (best) BASIC18.7■□□□□ 0.58
SKA1Q96BD8 FAM87B-201ENST00000326734 1947 ntTSL 2 BASIC18.7■□□□□ 0.58
SKA1Q96BD8 PDE9A-213ENST00000398236 1776 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
SKA1Q96BD8 CASKIN2-205ENST00000581870 1612 ntTSL 2 BASIC18.7■□□□□ 0.58
SKA1Q96BD8 RASSF7-205ENST00000454668 1450 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
SKA1Q96BD8 TEX264-204ENST00000415259 2290 ntAPPRIS P3 TSL 5 BASIC18.7■□□□□ 0.58
SKA1Q96BD8 HARBI1-201ENST00000326737 1967 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
SKA1Q96BD8 NDRG2-227ENST00000554143 1980 ntAPPRIS ALT1 TSL 2 BASIC18.7■□□□□ 0.58
SKA1Q96BD8 TRPM4-213ENST00000599628 1829 ntTSL 2 BASIC18.7■□□□□ 0.58
SKA1Q96BD8 GTF2H4-202ENST00000376316 1673 ntAPPRIS P1 TSL 5 BASIC18.69■□□□□ 0.58
SKA1Q96BD8 FADS1-204ENST00000433932 1690 ntTSL 2 BASIC18.69■□□□□ 0.58
SKA1Q96BD8 STARD3-209ENST00000544210 1666 ntTSL 2 BASIC18.69■□□□□ 0.58
SKA1Q96BD8 WWC3-201ENST00000380861 6647 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
SKA1Q96BD8 FAM20A-205ENST00000592554 2955 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
SKA1Q96BD8 MINPP1-201ENST00000371994 2183 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
SKA1Q96BD8 AGPAT2-205ENST00000538402 1357 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
SKA1Q96BD8 SAMD11-210ENST00000616016 2391 ntTSL 5 BASIC18.69■□□□□ 0.58
SKA1Q96BD8 RGS3-231ENST00000613049 1726 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
SKA1Q96BD8 PLK1-201ENST00000300093 2227 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
SKA1Q96BD8 ANKRD13D-201ENST00000308440 2219 ntTSL 2 BASIC18.69■□□□□ 0.58
SKA1Q96BD8 STIM2-212ENST00000639640 2241 ntAPPRIS P3 TSL 1 (best) BASIC18.69■□□□□ 0.58
SKA1Q96BD8 HPS3-202ENST00000460120 2745 ntTSL 2 BASIC18.69■□□□□ 0.58
SKA1Q96BD8 YPEL3-202ENST00000398841 1588 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
SKA1Q96BD8 PHKG2-202ENST00000424889 1566 ntTSL 2 BASIC18.69■□□□□ 0.58
SKA1Q96BD8 WIPI1-202ENST00000546360 1575 ntTSL 2 BASIC18.69■□□□□ 0.58
SKA1Q96BD8 SALRNA1-201ENST00000555871 2086 ntTSL 4 BASIC18.69■□□□□ 0.58
SKA1Q96BD8 PTGER3-202ENST00000351052 1404 ntAPPRIS ALT2 TSL 5 BASIC18.69■□□□□ 0.58
SKA1Q96BD8 AEBP2-201ENST00000266508 3620 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
SKA1Q96BD8 USP48-204ENST00000400301 4309 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
SKA1Q96BD8 ALDH4A1-201ENST00000290597 2124 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
SKA1Q96BD8 TLCD1-201ENST00000292090 1017 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
SKA1Q96BD8 BET1L-202ENST00000332865 533 ntTSL 5 BASIC18.69■□□□□ 0.58
SKA1Q96BD8 TTC22-201ENST00000371274 2149 ntTSL 2 BASIC18.69■□□□□ 0.58
SKA1Q96BD8 AC093901.1-201ENST00000414886 778 ntTSL 5 BASIC18.69■□□□□ 0.58
SKA1Q96BD8 AL450487.1-201ENST00000426799 995 ntBASIC18.69■□□□□ 0.58
SKA1Q96BD8 TRIM73-203ENST00000437796 1169 ntAPPRIS P2 TSL 1 (best) BASIC18.69■□□□□ 0.58
SKA1Q96BD8 TSPY23P-201ENST00000440136 739 ntBASIC18.69■□□□□ 0.58
SKA1Q96BD8 MIR1302-2HG-202ENST00000473358 712 ntTSL 5 BASIC18.69■□□□□ 0.58
SKA1Q96BD8 MRPL2-208ENST00000489623 570 ntTSL 2 BASIC18.69■□□□□ 0.58
SKA1Q96BD8 LY6E-209ENST00000521003 740 ntAPPRIS P2 TSL 2 BASIC18.69■□□□□ 0.58
SKA1Q96BD8 LINC00599-204ENST00000521242 716 ntTSL 3 BASIC18.69■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 40.9 ms