Protein–RNA interactions for Protein: Q8NHQ9

DDX55, ATP-dependent RNA helicase DDX55, humanhuman

Known RBP eCLIP

Length 600 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55Q8NHQ9 EIF3G-206ENST00000588709 828 ntTSL 516.37■□□□□ 0.212e-7■□□□□ 10.2
DDX55Q8NHQ9 EIF3G-202ENST00000587146 709 ntTSL 516.09■□□□□ 0.172e-7■□□□□ 10.2
DDX55Q8NHQ9 EIF3G-214ENST00000593066 590 ntTSL 514.95□□□□□ -0.022e-7■□□□□ 10.2
DDX55Q8NHQ9 EIF3G-215ENST00000593095 636 ntTSL 313.79□□□□□ -0.22e-7■□□□□ 10.2
DDX55Q8NHQ9 EIF3G-208ENST00000589454 873 ntTSL 513.53□□□□□ -0.242e-7■□□□□ 10.2
DDX55Q8NHQ9 EIF3G-205ENST00000587993 555 ntTSL 313.4□□□□□ -0.262e-7■□□□□ 10.2
DDX55Q8NHQ9 EIF3G-204ENST00000587681 537 ntTSL 210.34□□□□□ -0.752e-7■□□□□ 10.2
DDX55Q8NHQ9 NUCB1-211ENST00000485798 938 ntTSL 318.44■□□□□ 0.544e-7■□□□□ 10.2
DDX55Q8NHQ9 HUWE1-210ENST00000474971 598 ntTSL 24.19□□□□□ -1.742e-6■□□□□ 10.2
DDX55Q8NHQ9 PFKL-205ENST00000466134 5986 ntTSL 222.35■■□□□ 1.171e-18■□□□□ 10.2
DDX55Q8NHQ9 PFKL-206ENST00000467315 1947 ntTSL 221.92■■□□□ 1.11e-18■□□□□ 10.2
DDX55Q8NHQ9 PFKL-207ENST00000474114 6007 ntTSL 1 (best)20.71■□□□□ 0.911e-18■□□□□ 10.2
DDX55Q8NHQ9 PFKL-201ENST00000349048 2912 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.581e-18■□□□□ 10.2
DDX55Q8NHQ9 PFKL-211ENST00000498841 3122 ntTSL 1 (best)17.78■□□□□ 0.441e-18■□□□□ 10.2
DDX55Q8NHQ9 PFKL-204ENST00000460521 2818 ntTSL 215.71■□□□□ 0.11e-18■□□□□ 10.2
DDX55Q8NHQ9 PFKL-202ENST00000397961 3390 ntTSL 1 (best)15.44■□□□□ 0.061e-18■□□□□ 10.2
DDX55Q8NHQ9 NME4-210ENST00000468031 1861 ntTSL 220.61■□□□□ 0.892e-21■□□□□ 10.2
DDX55Q8NHQ9 CISD3-204ENST00000613478 2074 ntAPPRIS P1 TSL 2 BASIC30.69■■■□□ 2.55e-6■□□□□ 10.2
DDX55Q8NHQ9 PANK2-207ENST00000610179 1807 ntAPPRIS ALT2 TSL 1 (best) BASIC30.33■■■□□ 2.455e-6■□□□□ 10.2
DDX55Q8NHQ9 PANK2-202ENST00000336066 1843 ntTSL 1 (best)28.53■■■□□ 2.165e-6■□□□□ 10.2
DDX55Q8NHQ9 SSR2-204ENST00000467041 577 ntTSL 327.81■■■□□ 2.045e-6■□□□□ 10.2
DDX55Q8NHQ9 CHTF18-204ENST00000440239 1801 ntTSL 1 (best)27.51■■□□□ 1.995e-6■□□□□ 10.2
DDX55Q8NHQ9 ZYX-201ENST00000322764 2493 ntAPPRIS P2 TSL 1 (best) BASIC25.14■■□□□ 1.624e-26■□□□□ 10.2
DDX55Q8NHQ9 CHTF18-218ENST00000569270 711 ntTSL 524.03■■□□□ 1.445e-6■□□□□ 10.2
DDX55Q8NHQ9 TYMSOS-202ENST00000585033 560 ntTSL 223.98■■□□□ 1.435e-6■□□□□ 10.2
DDX55Q8NHQ9 PANK2-201ENST00000316562 2280 ntAPPRIS P2 TSL 1 (best) BASIC23.59■■□□□ 1.375e-6■□□□□ 10.2
DDX55Q8NHQ9 TYMSOS-201ENST00000323813 844 ntTSL 1 (best) BASIC23.17■■□□□ 1.35e-6■□□□□ 10.2
DDX55Q8NHQ9 EXOC7-217ENST00000589507 820 ntTSL 521.51■■□□□ 1.035e-6■□□□□ 10.2
DDX55Q8NHQ9 TMEM161A-202ENST00000450333 1930 ntTSL 2 BASIC21.51■■□□□ 1.035e-6■□□□□ 10.2
DDX55Q8NHQ9 CCT5-205ENST00000506600 1939 ntTSL 2 BASIC21.21■□□□□ 0.995e-6■□□□□ 10.2
DDX55Q8NHQ9 CCT5-214ENST00000515676 1997 ntTSL 2 BASIC21.18■□□□□ 0.985e-6■□□□□ 10.2
DDX55Q8NHQ9 CISD3-206ENST00000619858 2326 ntTSL 1 (best)21.12■□□□□ 0.975e-6■□□□□ 10.2
DDX55Q8NHQ9 TMEM161A-213ENST00000591443 657 ntTSL 221■□□□□ 0.955e-6■□□□□ 10.2
DDX55Q8NHQ9 TMEM161A-209ENST00000587985 1754 ntTSL 520.83■□□□□ 0.935e-6■□□□□ 10.2
DDX55Q8NHQ9 NUDC-201ENST00000321265 1800 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.925e-6■□□□□ 10.2
DDX55Q8NHQ9 SLC22A31-205ENST00000603735 791 ntTSL 320.66■□□□□ 0.95e-6■□□□□ 10.2
DDX55Q8NHQ9 CHTF18-203ENST00000426047 790 ntTSL 319.8■□□□□ 0.765e-6■□□□□ 10.2
DDX55Q8NHQ9 TMEM161A-205ENST00000587406 1923 ntTSL 519.54■□□□□ 0.725e-6■□□□□ 10.2
DDX55Q8NHQ9 TMEM161A-206ENST00000587583 1654 ntTSL 5 BASIC19.42■□□□□ 0.75e-6■□□□□ 10.2
DDX55Q8NHQ9 TMEM161A-210ENST00000589448 1799 ntTSL 519.42■□□□□ 0.75e-6■□□□□ 10.2
DDX55Q8NHQ9 CABIN1-202ENST00000337989 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.665e-6■□□□□ 10.2
DDX55Q8NHQ9 PANK2-209ENST00000621507 1763 ntTSL 1 (best) BASIC19.16■□□□□ 0.665e-6■□□□□ 10.2
DDX55Q8NHQ9 SF3B3-215ENST00000577085 529 ntTSL 419.05■□□□□ 0.645e-6■□□□□ 10.2
DDX55Q8NHQ9 TMEM161A-201ENST00000162044 1820 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.625e-6■□□□□ 10.2
DDX55Q8NHQ9 CHTF18-202ENST00000317063 2988 ntAPPRIS ALT2 TSL 5 BASIC18.54■□□□□ 0.565e-6■□□□□ 10.2
DDX55Q8NHQ9 CHTF18-211ENST00000491530 819 ntTSL 518.43■□□□□ 0.545e-6■□□□□ 10.2
DDX55Q8NHQ9 CHTF18-217ENST00000567620 701 ntTSL 518.26■□□□□ 0.515e-6■□□□□ 10.2
DDX55Q8NHQ9 VARS-228ENST00000495010 1007 ntTSL 517.98■□□□□ 0.475e-6■□□□□ 10.2
DDX55Q8NHQ9 CISD3-205ENST00000616128 773 ntTSL 217.96■□□□□ 0.475e-6■□□□□ 10.2
DDX55Q8NHQ9 SLC22A31-204ENST00000568161 651 ntTSL 317.84■□□□□ 0.455e-6■□□□□ 10.2
DDX55Q8NHQ9 VARS-227ENST00000489979 658 ntTSL 317.71■□□□□ 0.435e-6■□□□□ 10.2
DDX55Q8NHQ9 EXOC7-213ENST00000467929 2260 ntTSL 2 BASIC17.69■□□□□ 0.425e-6■□□□□ 10.2
DDX55Q8NHQ9 CHTF18-220ENST00000631357 3555 ntAPPRIS ALT2 TSL 5 BASIC17.51■□□□□ 0.395e-6■□□□□ 10.2
DDX55Q8NHQ9 TMEM127-202ENST00000432959 3099 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.385e-6■□□□□ 10.2
DDX55Q8NHQ9 PSMD2-201ENST00000310118 3449 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.35e-6■□□□□ 10.2
DDX55Q8NHQ9 CHTF18-205ENST00000455171 3172 ntAPPRIS ALT2 TSL 2 BASIC16.63■□□□□ 0.255e-6■□□□□ 10.2
DDX55Q8NHQ9 TMEM127-201ENST00000258439 6266 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.245e-6■□□□□ 10.2
DDX55Q8NHQ9 ZYX-202ENST00000354434 2050 ntAPPRIS ALT2 TSL 216.11■□□□□ 0.174e-26■□□□□ 10.2
DDX55Q8NHQ9 CHTF18-208ENST00000471202 4494 ntTSL 215.55■□□□□ 0.085e-6■□□□□ 10.2
DDX55Q8NHQ9 CHTF18-207ENST00000464728 4088 ntTSL 215.55■□□□□ 0.085e-6■□□□□ 10.2
DDX55Q8NHQ9 PSKH1-201ENST00000291041 3481 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.025e-6■□□□□ 10.2
DDX55Q8NHQ9 ACAA2-205ENST00000587994 1657 ntAPPRIS ALT1 TSL 5 BASIC15.16■□□□□ 0.025e-6■□□□□ 10.2
DDX55Q8NHQ9 ZYX-203ENST00000392910 2123 ntAPPRIS ALT2 TSL 2 BASIC14.98□□□□□ -0.014e-26■□□□□ 10.2
DDX55Q8NHQ9 CHTF18-201ENST00000262315 3090 ntAPPRIS P2 TSL 1 (best) BASIC14.86□□□□□ -0.035e-6■□□□□ 10.2
DDX55Q8NHQ9 WDFY1-201ENST00000233055 4660 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.045e-6■□□□□ 10.2
DDX55Q8NHQ9 EXOC7-206ENST00000406660 718 ntTSL 2 BASIC14.55□□□□□ -0.085e-6■□□□□ 10.2
DDX55Q8NHQ9 SNRPD1-204ENST00000582475 723 ntTSL 3 BASIC14.41□□□□□ -0.15e-6■□□□□ 10.2
DDX55Q8NHQ9 EXOC7-205ENST00000405575 2208 ntTSL 5 BASIC14.3□□□□□ -0.125e-6■□□□□ 10.2
DDX55Q8NHQ9 EXOC7-216ENST00000589210 4751 ntAPPRIS ALT1 TSL 1 (best) BASIC13.79□□□□□ -0.25e-6■□□□□ 10.2
DDX55Q8NHQ9 CCT5-203ENST00000503026 1933 ntTSL 2 BASIC13.77□□□□□ -0.215e-6■□□□□ 10.2
DDX55Q8NHQ9 EXOC7-207ENST00000411744 2031 ntAPPRIS ALT1 TSL 1 (best) BASIC13.6□□□□□ -0.235e-6■□□□□ 10.2
DDX55Q8NHQ9 PANK2-206ENST00000497424 4815 ntTSL 2 BASIC13.39□□□□□ -0.275e-6■□□□□ 10.2
DDX55Q8NHQ9 PSMD2-205ENST00000435761 2574 ntTSL 2 BASIC13.35□□□□□ -0.275e-6■□□□□ 10.2
DDX55Q8NHQ9 CABIN1-201ENST00000263119 7222 ntAPPRIS P3 TSL 1 (best) BASIC13.33□□□□□ -0.285e-6■□□□□ 10.2
DDX55Q8NHQ9 CABIN1-203ENST00000398319 7480 ntAPPRIS P3 TSL 1 (best) BASIC12.93□□□□□ -0.345e-6■□□□□ 10.2
DDX55Q8NHQ9 SNRPD1-203ENST00000579618 320 ntTSL 5 BASIC12.72□□□□□ -0.375e-6■□□□□ 10.2
DDX55Q8NHQ9 EXOC7-201ENST00000332065 4596 ntAPPRIS P3 TSL 2 BASIC12.37□□□□□ -0.435e-6■□□□□ 10.2
DDX55Q8NHQ9 CABIN1-204ENST00000405822 6952 ntAPPRIS ALT2 TSL 1 (best) BASIC12.35□□□□□ -0.435e-6■□□□□ 10.2
DDX55Q8NHQ9 CABIN1-214ENST00000617531 7072 ntAPPRIS ALT2 TSL 5 BASIC12.06□□□□□ -0.485e-6■□□□□ 10.2
DDX55Q8NHQ9 EXOC7-204ENST00000405068 2958 ntTSL 212.04□□□□□ -0.485e-6■□□□□ 10.2
DDX55Q8NHQ9 ACAA2-201ENST00000285093 3350 ntAPPRIS P2 TSL 1 (best) BASIC11.95□□□□□ -0.55e-6■□□□□ 10.2
DDX55Q8NHQ9 CDK6-201ENST00000265734 11612 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.55e-6■□□□□ 10.2
DDX55Q8NHQ9 EXOC7-221ENST00000634349 2124 ntTSL 1 (best) BASIC11.87□□□□□ -0.515e-6■□□□□ 10.2
DDX55Q8NHQ9 CCT5-210ENST00000511995 1091 ntTSL 211.78□□□□□ -0.525e-6■□□□□ 10.2
DDX55Q8NHQ9 WDFY1-203ENST00000462702 361 ntTSL 311.63□□□□□ -0.555e-6■□□□□ 10.2
DDX55Q8NHQ9 C16orf70-207ENST00000569277 519 ntTSL 311.53□□□□□ -0.565e-6■□□□□ 10.2
DDX55Q8NHQ9 EXOC7-202ENST00000335146 3519 ntTSL 1 (best) BASIC11.39□□□□□ -0.595e-6■□□□□ 10.2
DDX55Q8NHQ9 SF3B3-207ENST00000566095 453 ntTSL 311.38□□□□□ -0.595e-6■□□□□ 10.2
DDX55Q8NHQ9 DCAF12-201ENST00000361264 3667 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.615e-6■□□□□ 10.2
DDX55Q8NHQ9 SLC31A1-202ENST00000496650 475 ntTSL 211.14□□□□□ -0.635e-6■□□□□ 10.2
DDX55Q8NHQ9 PSMD2-206ENST00000439383 2633 ntTSL 2 BASIC11.05□□□□□ -0.645e-6■□□□□ 10.2
DDX55Q8NHQ9 POLR1A-203ENST00000409681 6454 ntTSL 5 BASIC10.83□□□□□ -0.685e-6■□□□□ 10.2
DDX55Q8NHQ9 CCT5-213ENST00000515390 1728 ntTSL 2 BASIC10.14□□□□□ -0.795e-6■□□□□ 10.2
DDX55Q8NHQ9 SSR2-214ENST00000526212 351 ntTSL 510.05□□□□□ -0.85e-6■□□□□ 10.2
DDX55Q8NHQ9 ACAA2-206ENST00000589432 1840 ntTSL 5 BASIC9.6□□□□□ -0.875e-6■□□□□ 10.2
DDX55Q8NHQ9 EXOC7-220ENST00000607838 3353 ntTSL 5 BASIC9.23□□□□□ -0.935e-6■□□□□ 10.2
DDX55Q8NHQ9 NQO1-205ENST00000561500 891 ntTSL 3 BASIC9.14□□□□□ -0.955e-6■□□□□ 10.2
DDX55Q8NHQ9 NQO1-204ENST00000439109 924 ntTSL 2 BASIC9.07□□□□□ -0.965e-6■□□□□ 10.2
DDX55Q8NHQ9 SLC31A1-201ENST00000374212 4744 ntAPPRIS P1 TSL 1 (best) BASIC9.04□□□□□ -0.965e-6■□□□□ 10.2
DDX55Q8NHQ9 SNRPD1-201ENST00000300413 4909 ntAPPRIS P1 TSL 1 (best) BASIC8.97□□□□□ -0.975e-6■□□□□ 10.2
Retrieved 100 of 15,504 protein–RNA pairs in 104.8 ms