Protein–RNA interactions for Protein: Q8NDQ6

ZNF540, Zinc finger protein 540, humanhuman

Predictions only

Length 660 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540Q8NDQ6 IFFO1-211ENST00000615885 2775 ntTSL 5 BASIC16.94■□□□□ 0.3
ZNF540Q8NDQ6 MFSD10-205ENST00000507555 1573 ntTSL 5 BASIC16.94■□□□□ 0.3
ZNF540Q8NDQ6 ETNK2-202ENST00000367201 2431 ntAPPRIS ALT2 TSL 2 BASIC16.94■□□□□ 0.3
ZNF540Q8NDQ6 RABEPK-204ENST00000394125 1466 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
ZNF540Q8NDQ6 RABL6-203ENST00000371663 3078 ntAPPRIS ALT2 TSL 1 (best) BASIC16.93■□□□□ 0.3
ZNF540Q8NDQ6 NSD3-201ENST00000316985 3995 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
ZNF540Q8NDQ6 NAT9-201ENST00000357814 1875 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
ZNF540Q8NDQ6 PDE9A-206ENST00000380328 1875 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
ZNF540Q8NDQ6 PLD3-207ENST00000409735 2140 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
ZNF540Q8NDQ6 CACNA1G-206ENST00000416767 4899 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
ZNF540Q8NDQ6 NECTIN3-211ENST00000493615 1876 ntAPPRIS ALT2 TSL 2 BASIC16.93■□□□□ 0.3
ZNF540Q8NDQ6 MTMR9LP-203ENST00000426597 1545 ntBASIC16.93■□□□□ 0.3
ZNF540Q8NDQ6 HSPB2-C11orf52-202ENST00000534100 1521 ntAPPRIS ALT2 TSL 2 BASIC16.93■□□□□ 0.3
ZNF540Q8NDQ6 ZHX3-212ENST00000558993 1528 ntTSL 5 BASIC16.93■□□□□ 0.3
ZNF540Q8NDQ6 HAS3-201ENST00000219322 1163 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
ZNF540Q8NDQ6 METTL5-206ENST00000409965 880 ntAPPRIS P2 TSL 1 (best) BASIC16.93■□□□□ 0.3
ZNF540Q8NDQ6 ANKRD54-204ENST00000411961 946 ntTSL 5 BASIC16.93■□□□□ 0.3
ZNF540Q8NDQ6 TUBB8P6-201ENST00000436895 1288 ntBASIC16.93■□□□□ 0.3
ZNF540Q8NDQ6 AL590666.2-201ENST00000448869 758 ntTSL 2 BASIC16.93■□□□□ 0.3
ZNF540Q8NDQ6 GCFC2-207ENST00000470503 1066 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
ZNF540Q8NDQ6 AC108693.2-201ENST00000492981 303 ntTSL 3 BASIC16.93■□□□□ 0.3
ZNF540Q8NDQ6 EGFEM1P-209ENST00000502332 728 ntTSL 3 BASIC16.93■□□□□ 0.3
ZNF540Q8NDQ6 GOSR2-208ENST00000573224 1115 ntTSL 5 BASIC16.93■□□□□ 0.3
ZNF540Q8NDQ6 ARMC4P1-202ENST00000576034 643 ntTSL 2 BASIC16.93■□□□□ 0.3
ZNF540Q8NDQ6 AC124016.1-201ENST00000609552 612 ntBASIC16.93■□□□□ 0.3
ZNF540Q8NDQ6 AL023875.1-201ENST00000640777 796 ntBASIC16.93■□□□□ 0.3
ZNF540Q8NDQ6 EVI5L-202ENST00000538904 2418 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
ZNF540Q8NDQ6 AL138752.2-201ENST00000540557 2591 ntAPPRIS P1 TSL 5 BASIC16.93■□□□□ 0.3
ZNF540Q8NDQ6 GPR149-201ENST00000389740 2323 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
ZNF540Q8NDQ6 IGF2-205ENST00000416167 5585 ntAPPRIS P2 TSL 1 (best) BASIC16.93■□□□□ 0.3
ZNF540Q8NDQ6 ZNF804A-201ENST00000302277 4690 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
ZNF540Q8NDQ6 CYP2U1-202ENST00000508453 3125 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
ZNF540Q8NDQ6 CLCN2-204ENST00000434054 2897 ntAPPRIS ALT2 TSL 2 BASIC16.93■□□□□ 0.3
ZNF540Q8NDQ6 BEND4-202ENST00000504360 8692 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
ZNF540Q8NDQ6 OR6D1P-203ENST00000641209 4860 ntBASIC16.93■□□□□ 0.3
ZNF540Q8NDQ6 TBL2-201ENST00000305632 3161 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
ZNF540Q8NDQ6 GABRB1-201ENST00000295454 2143 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
ZNF540Q8NDQ6 ZBTB11-202ENST00000461821 2115 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
ZNF540Q8NDQ6 RAB22A-201ENST00000244040 8670 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
ZNF540Q8NDQ6 MTCL1-205ENST00000517570 6009 ntAPPRIS ALT2 TSL 1 (best) BASIC16.93■□□□□ 0.3
ZNF540Q8NDQ6 POR-209ENST00000439269 1858 ntTSL 2 BASIC16.93■□□□□ 0.3
ZNF540Q8NDQ6 PPP1R9B-202ENST00000612501 4167 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
ZNF540Q8NDQ6 MIEF2-204ENST00000395706 2441 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
ZNF540Q8NDQ6 ORAI2-205ENST00000478730 5531 ntAPPRIS P1 TSL 2 BASIC16.92■□□□□ 0.3
ZNF540Q8NDQ6 AC079922.2-201ENST00000457336 2022 ntTSL 2 BASIC16.92■□□□□ 0.3
ZNF540Q8NDQ6 RGS3-211ENST00000462403 2155 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
ZNF540Q8NDQ6 SYT7-209ENST00000542836 1362 ntTSL 5 BASIC16.92■□□□□ 0.3
ZNF540Q8NDQ6 DIO3OS-212ENST00000557661 1937 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
ZNF540Q8NDQ6 PNLDC1-207ENST00000610273 1940 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
ZNF540Q8NDQ6 GPAT3-202ENST00000395226 2631 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
ZNF540Q8NDQ6 POMT1-208ENST00000423007 3320 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
ZNF540Q8NDQ6 CAMK2G-205ENST00000372765 1822 ntTSL 5 BASIC16.92■□□□□ 0.3
ZNF540Q8NDQ6 C1orf159-205ENST00000421241 1841 ntAPPRIS P3 TSL 2 BASIC16.92■□□□□ 0.3
ZNF540Q8NDQ6 SOCS7-201ENST00000612932 7857 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
ZNF540Q8NDQ6 TLE4-206ENST00000376552 3695 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
ZNF540Q8NDQ6 C6orf132-202ENST00000356542 894 ntAPPRIS ALT2 TSL 2 BASIC16.92■□□□□ 0.3
ZNF540Q8NDQ6 ELF3-AS1-202ENST00000419190 788 ntTSL 2 BASIC16.92■□□□□ 0.3
ZNF540Q8NDQ6 KRT18P16-201ENST00000510337 1294 ntBASIC16.92■□□□□ 0.3
ZNF540Q8NDQ6 AC009065.4-203ENST00000562838 535 ntTSL 2 BASIC16.92■□□□□ 0.3
ZNF540Q8NDQ6 C17orf62-230ENST00000583617 866 ntTSL 5 BASIC16.92■□□□□ 0.3
ZNF540Q8NDQ6 Z99916.2-201ENST00000604037 246 ntBASIC16.92■□□□□ 0.3
ZNF540Q8NDQ6 GTF2IRD2B-206ENST00000614064 573 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
ZNF540Q8NDQ6 CABP2-204ENST00000636477 941 ntTSL 5 BASIC16.92■□□□□ 0.3
ZNF540Q8NDQ6 RAB11FIP5-205ENST00000486777 6120 ntTSL 5 BASIC16.92■□□□□ 0.3
ZNF540Q8NDQ6 NDUFV3-202ENST00000354250 1575 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
ZNF540Q8NDQ6 USP39-201ENST00000323701 2177 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
ZNF540Q8NDQ6 PLCB2-201ENST00000260402 4616 ntAPPRIS P3 TSL 2 BASIC16.92■□□□□ 0.3
ZNF540Q8NDQ6 MIB2-219ENST00000505820 3305 ntAPPRIS P3 TSL 1 (best) BASIC16.91■□□□□ 0.3
ZNF540Q8NDQ6 CAPN1-201ENST00000279247 3007 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
ZNF540Q8NDQ6 RARA-206ENST00000425707 3041 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
ZNF540Q8NDQ6 PTPA-203ENST00000348141 2737 ntTSL 5 BASIC16.91■□□□□ 0.3
ZNF540Q8NDQ6 PTPA-207ENST00000393370 2737 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
ZNF540Q8NDQ6 ISM1-201ENST00000262487 2593 ntAPPRIS P1 TSL 5 BASIC16.91■□□□□ 0.3
ZNF540Q8NDQ6 BIN1-208ENST00000376113 1832 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
ZNF540Q8NDQ6 OGFOD3-202ENST00000329197 1652 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
ZNF540Q8NDQ6 SAAL1-201ENST00000300013 1518 ntAPPRIS ALT1 TSL 2 BASIC16.91■□□□□ 0.3
ZNF540Q8NDQ6 DPP6-202ENST00000377770 3710 ntAPPRIS P4 TSL 1 (best) BASIC16.91■□□□□ 0.3
ZNF540Q8NDQ6 TCP11-204ENST00000373979 1882 ntAPPRIS P3 TSL 5 BASIC16.91■□□□□ 0.3
ZNF540Q8NDQ6 RCC2P6-201ENST00000526625 1557 ntBASIC16.91■□□□□ 0.3
ZNF540Q8NDQ6 LIFR-202ENST00000453190 4253 ntAPPRIS P1 TSL 2 BASIC16.91■□□□□ 0.3
ZNF540Q8NDQ6 C8orf34-206ENST00000518698 2223 ntAPPRIS P2 TSL 2 BASIC16.91■□□□□ 0.3
ZNF540Q8NDQ6 HOXA6-201ENST00000222728 989 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
ZNF540Q8NDQ6 ABHD14A-201ENST00000273596 1062 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
ZNF540Q8NDQ6 H3F3A-204ENST00000366816 799 ntAPPRIS P1 TSL 3 BASIC16.91■□□□□ 0.3
ZNF540Q8NDQ6 NKAIN4-201ENST00000370307 793 ntTSL 5 BASIC16.91■□□□□ 0.3
ZNF540Q8NDQ6 RPS2P55-201ENST00000397318 883 ntBASIC16.91■□□□□ 0.3
ZNF540Q8NDQ6 C16orf90-202ENST00000437192 907 ntAPPRIS P1 TSL 5 BASIC16.91■□□□□ 0.3
ZNF540Q8NDQ6 TSPAN14-209ENST00000481124 808 ntTSL 2 BASIC16.91■□□□□ 0.3
ZNF540Q8NDQ6 AC107956.1-201ENST00000494359 873 ntBASIC16.91■□□□□ 0.3
ZNF540Q8NDQ6 AC233702.5-201ENST00000584107 538 ntBASIC16.91■□□□□ 0.3
ZNF540Q8NDQ6 KLF2-202ENST00000592003 564 ntTSL 3 BASIC16.91■□□□□ 0.3
ZNF540Q8NDQ6 FMR1-AS1_2.1-201ENST00000613724 127 ntBASIC16.91■□□□□ 0.3
ZNF540Q8NDQ6 WASF1-202ENST00000359451 3075 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
ZNF540Q8NDQ6 EPS8L2-205ENST00000526198 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
ZNF540Q8NDQ6 MYO19-225ENST00000621344 1640 ntTSL 2 BASIC16.91■□□□□ 0.3
ZNF540Q8NDQ6 AD000864.1-201ENST00000624076 2295 ntBASIC16.91■□□□□ 0.3
ZNF540Q8NDQ6 ADGRB2-212ENST00000527361 4919 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
ZNF540Q8NDQ6 ISLR2-203ENST00000435464 4259 ntAPPRIS P1 TSL 2 BASIC16.91■□□□□ 0.3
ZNF540Q8NDQ6 NPAS1-201ENST00000439365 1341 ntTSL 2 BASIC16.91■□□□□ 0.3
ZNF540Q8NDQ6 DKK3-203ENST00000525493 1326 ntTSL 2 BASIC16.91■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 26.1 ms