Protein–RNA interactions for Protein: Q68DE3

USF3, Basic helix-loop-helix domain-containing protein USF3, humanhuman

Predictions only

Length 2,245 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF3Q68DE3 AIPL1-209ENST00000575265 2111 ntAPPRIS ALT2 TSL 1 (best) BASIC15.67■□□□□ 0.1
USF3Q68DE3 SNAI3-201ENST00000332281 1732 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
USF3Q68DE3 MAP3K6-207ENST00000493901 4309 ntAPPRIS P1 TSL 5 BASIC15.67■□□□□ 0.1
USF3Q68DE3 SEPT9-211ENST00000585930 1387 ntTSL 2 BASIC15.67■□□□□ 0.1
USF3Q68DE3 MRGPRG-AS1-201ENST00000420873 1818 ntTSL 2 BASIC15.67■□□□□ 0.1
USF3Q68DE3 UBQLN4P1-201ENST00000461599 1801 ntBASIC15.67■□□□□ 0.1
USF3Q68DE3 FER1L4-211ENST00000616283 1818 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
USF3Q68DE3 ZSWIM4-201ENST00000254323 4339 ntAPPRIS P1 TSL 2 BASIC15.67■□□□□ 0.1
USF3Q68DE3 CD7-206ENST00000583376 1659 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
USF3Q68DE3 ATRIP-201ENST00000320211 2590 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
USF3Q68DE3 NCOA6-207ENST00000616167 3271 ntAPPRIS ALT2 TSL 5 BASIC15.67■□□□□ 0.1
USF3Q68DE3 WNK1-203ENST00000447667 1902 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
USF3Q68DE3 RGMB-AS1-201ENST00000498871 1903 ntTSL 2 BASIC15.67■□□□□ 0.1
USF3Q68DE3 HDDC3-201ENST00000330334 1047 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
USF3Q68DE3 CD99-205ENST00000381192 1245 ntAPPRIS P3 TSL 1 (best) BASIC15.67■□□□□ 0.1
USF3Q68DE3 TRAF3IP2-AS1-208ENST00000525151 609 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
USF3Q68DE3 AL512357.1-201ENST00000557687 518 ntTSL 4 BASIC15.67■□□□□ 0.1
USF3Q68DE3 AC007220.1-201ENST00000572466 1055 ntTSL 3 BASIC15.67■□□□□ 0.1
USF3Q68DE3 AC005332.3-201ENST00000589904 676 ntBASIC15.67■□□□□ 0.1
USF3Q68DE3 GPALPP1-207ENST00000611650 899 ntBASIC15.67■□□□□ 0.1
USF3Q68DE3 AC120114.3-201ENST00000611923 658 ntBASIC15.67■□□□□ 0.1
USF3Q68DE3 CD177-203ENST00000618265 2222 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
USF3Q68DE3 LTBP3-217ENST00000530785 2461 ntTSL 2 BASIC15.67■□□□□ 0.1
USF3Q68DE3 ULK1-201ENST00000321867 5310 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
USF3Q68DE3 OCSTAMP-201ENST00000279028 2043 ntAPPRIS P1 TSL 5 BASIC15.67■□□□□ 0.1
USF3Q68DE3 FOXI3-201ENST00000428390 2804 ntAPPRIS P1 TSL 3 BASIC15.67■□□□□ 0.1
USF3Q68DE3 AEBP2-201ENST00000266508 3620 ntAPPRIS ALT2 TSL 1 (best) BASIC15.66■□□□□ 0.1
USF3Q68DE3 SNAP47-201ENST00000315781 2367 ntAPPRIS P3 TSL 1 (best) BASIC15.66■□□□□ 0.1
USF3Q68DE3 EDN3-204ENST00000371028 2397 ntAPPRIS P4 TSL 5 BASIC15.66■□□□□ 0.1
USF3Q68DE3 PRSS23-201ENST00000280258 4015 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
USF3Q68DE3 HERPUD2-201ENST00000311350 2474 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
USF3Q68DE3 MAFF-206ENST00000538320 2458 ntAPPRIS P1 TSL 4 BASIC15.66■□□□□ 0.1
USF3Q68DE3 OGG1-203ENST00000302036 2220 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
USF3Q68DE3 DNAJC28-204ENST00000617313 2237 ntAPPRIS P1 TSL 5 BASIC15.66■□□□□ 0.1
USF3Q68DE3 MAPKAP1-205ENST00000373503 3045 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
USF3Q68DE3 LINC00466-207ENST00000634725 1736 ntTSL 5 BASIC15.66■□□□□ 0.1
USF3Q68DE3 ENOPH1-201ENST00000273920 2025 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
USF3Q68DE3 TESMIN-201ENST00000255087 2579 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
USF3Q68DE3 KIF1BP-204ENST00000626493 2337 ntTSL 5 BASIC15.66■□□□□ 0.1
USF3Q68DE3 CYP51A1P1-201ENST00000492267 1507 ntBASIC15.66■□□□□ 0.1
USF3Q68DE3 RHOBTB2-201ENST00000251822 5451 ntAPPRIS P3 TSL 1 (best) BASIC15.66■□□□□ 0.1
USF3Q68DE3 BRMS1L-201ENST00000216807 2657 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
USF3Q68DE3 UBE3C-201ENST00000348165 5229 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
USF3Q68DE3 TNNI3-201ENST00000344887 840 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
USF3Q68DE3 ART5-201ENST00000359918 1241 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
USF3Q68DE3 IGHGP-201ENST00000390555 1178 ntBASIC15.66■□□□□ 0.1
USF3Q68DE3 RABL2B-209ENST00000435118 1126 ntAPPRIS P3 TSL 1 (best) BASIC15.66■□□□□ 0.1
USF3Q68DE3 MIR130B-201ENST00000498589 1093 ntTSL 5 BASIC15.66■□□□□ 0.1
USF3Q68DE3 SMN1-203ENST00000503079 1219 ntTSL 5 BASIC15.66■□□□□ 0.1
USF3Q68DE3 DIO3-201ENST00000510508 2102 ntAPPRIS P1 BASIC15.66■□□□□ 0.1
USF3Q68DE3 AP003555.3-201ENST00000534086 432 ntTSL 4 BASIC15.66■□□□□ 0.1
USF3Q68DE3 AC011511.2-201ENST00000592893 918 ntTSL 3 BASIC15.66■□□□□ 0.1
USF3Q68DE3 Z69720.1-201ENST00000601483 472 ntBASIC15.66■□□□□ 0.1
USF3Q68DE3 AC024563.2-201ENST00000603282 481 ntBASIC15.66■□□□□ 0.1
USF3Q68DE3 CDK2AP1-207ENST00000618072 1144 ntTSL 3 BASIC15.66■□□□□ 0.1
USF3Q68DE3 EBLN3P-205ENST00000629870 958 ntTSL 3 BASIC15.66■□□□□ 0.1
USF3Q68DE3 NUDT16-201ENST00000502852 1552 ntTSL 2 BASIC15.66■□□□□ 0.1
USF3Q68DE3 NTRK1-201ENST00000358660 2492 ntAPPRIS ALT2 TSL 2 BASIC15.66■□□□□ 0.1
USF3Q68DE3 TMEM155-201ENST00000337677 2313 ntAPPRIS P2 TSL 1 (best) BASIC15.66■□□□□ 0.1
USF3Q68DE3 COPS7A-204ENST00000534947 2034 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
USF3Q68DE3 HEXDC-201ENST00000327949 1733 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
USF3Q68DE3 CCND3-204ENST00000414200 1724 ntTSL 2 BASIC15.66■□□□□ 0.1
USF3Q68DE3 KHNYN-206ENST00000556842 2443 ntAPPRIS P1 TSL 2 BASIC15.66■□□□□ 0.1
USF3Q68DE3 EGLN2-201ENST00000303961 2102 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
USF3Q68DE3 PBK-203ENST00000522944 1499 ntTSL 2 BASIC15.66■□□□□ 0.1
USF3Q68DE3 PGAM1-201ENST00000334828 1830 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
USF3Q68DE3 STARD10-218ENST00000543304 1513 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
USF3Q68DE3 PALM3-201ENST00000340790 2262 ntAPPRIS P2 TSL 5 BASIC15.66■□□□□ 0.1
USF3Q68DE3 TMEM222-201ENST00000374076 1599 ntAPPRIS P2 TSL 1 (best) BASIC15.66■□□□□ 0.1
USF3Q68DE3 COX20-203ENST00000411948 2631 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
USF3Q68DE3 C11orf80-214ENST00000532565 1948 ntAPPRIS ALT2 TSL 5 BASIC15.66■□□□□ 0.1
USF3Q68DE3 PIF1-205ENST00000559239 2677 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
USF3Q68DE3 ID2-202ENST00000331129 623 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
USF3Q68DE3 TCEAL2-202ENST00000372780 1100 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
USF3Q68DE3 TEX30-205ENST00000376029 959 ntTSL 2 BASIC15.66■□□□□ 0.1
USF3Q68DE3 CXorf40A-202ENST00000393985 1148 ntAPPRIS P3 TSL 1 (best) BASIC15.66■□□□□ 0.1
USF3Q68DE3 ELP6-205ENST00000439305 880 ntTSL 2 BASIC15.66■□□□□ 0.1
USF3Q68DE3 NAT14-202ENST00000587400 416 ntTSL 5 BASIC15.66■□□□□ 0.1
USF3Q68DE3 AL592071.1-201ENST00000611956 408 ntBASIC15.66■□□□□ 0.1
USF3Q68DE3 ZNF74-203ENST00000403682 2789 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
USF3Q68DE3 CAPS-201ENST00000452990 1789 ntTSL 5 BASIC15.65■□□□□ 0.1
USF3Q68DE3 PLPPR2-208ENST00000591608 2552 ntAPPRIS ALT2 TSL 2 BASIC15.65■□□□□ 0.1
USF3Q68DE3 NOMO2-212ENST00000622306 4252 ntAPPRIS P3 TSL 1 (best) BASIC15.65■□□□□ 0.1
USF3Q68DE3 SLC26A11-212ENST00000572725 1862 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
USF3Q68DE3 SERPINH1-215ENST00000533603 2299 ntAPPRIS P1 TSL 2 BASIC15.65■□□□□ 0.1
USF3Q68DE3 MAL-203ENST00000353004 873 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
USF3Q68DE3 PRSS42-201ENST00000429665 882 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
USF3Q68DE3 AC093459.1-201ENST00000444567 481 ntTSL 3 BASIC15.65■□□□□ 0.1
USF3Q68DE3 AL611929.1-201ENST00000457340 449 ntTSL 3 BASIC15.65■□□□□ 0.1
USF3Q68DE3 ANAPC11-204ENST00000571024 668 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
USF3Q68DE3 AP005901.3-202ENST00000581653 237 ntBASIC15.65■□□□□ 0.1
USF3Q68DE3 ANAPC11-218ENST00000582222 523 ntTSL 2 BASIC15.65■□□□□ 0.1
USF3Q68DE3 CALM3-211ENST00000598871 561 ntTSL 4 BASIC15.65■□□□□ 0.1
USF3Q68DE3 METTL23-215ENST00000615984 1171 ntAPPRIS P1 TSL 2 BASIC15.65■□□□□ 0.1
USF3Q68DE3 HLA-A-201ENST00000376802 1334 ntBASIC15.65■□□□□ 0.1
USF3Q68DE3 KCNQ2-205ENST00000360480 2775 ntAPPRIS ALT2 TSL 5 BASIC15.65■□□□□ 0.1
USF3Q68DE3 LSM11-201ENST00000286307 6584 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
USF3Q68DE3 TMEM79-203ENST00000405535 2201 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
USF3Q68DE3 CDK11A-205ENST00000378633 2458 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
USF3Q68DE3 GHDC-212ENST00000593209 1827 ntTSL 5 BASIC15.65■□□□□ 0.1
Retrieved 100 of 98,524 protein–RNA pairs in 71.7 ms