Protein–RNA interactions for Protein: P55283

CDH4, Cadherin-4, humanhuman

Predictions only

Length 916 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH4P55283 TBL1Y-203ENST00000383032 2407 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CDH4P55283 AHRR-204ENST00000506456 2350 ntTSL 2 BASIC18.61■□□□□ 0.57
CDH4P55283 MAFF-207ENST00000538999 2365 ntTSL 2 BASIC18.61■□□□□ 0.57
CDH4P55283 ZCWPW1-201ENST00000360951 2110 ntAPPRIS ALT2 TSL 2 BASIC18.61■□□□□ 0.57
CDH4P55283 ERI1-203ENST00000519292 2107 ntAPPRIS P1 TSL 2 BASIC18.61■□□□□ 0.57
CDH4P55283 MVK-201ENST00000228510 1956 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CDH4P55283 LDHD-202ENST00000450168 1966 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
CDH4P55283 ADCK5-201ENST00000308860 1949 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CDH4P55283 AC063977.6-201ENST00000600074 1763 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
CDH4P55283 PRELID3A-203ENST00000587735 1694 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
CDH4P55283 BCL11A-209ENST00000489516 1508 ntTSL 5 BASIC18.61■□□□□ 0.57
CDH4P55283 IFNLR1-205ENST00000374421 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
CDH4P55283 LINC00167-201ENST00000530583 1419 ntBASIC18.61■□□□□ 0.57
CDH4P55283 EXOSC5-201ENST00000221233 1118 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CDH4P55283 MOBP-204ENST00000420739 940 ntAPPRIS P4 TSL 5 BASIC18.61■□□□□ 0.57
CDH4P55283 TSPY12P-201ENST00000421279 868 ntBASIC18.61■□□□□ 0.57
CDH4P55283 AC093585.1-201ENST00000425183 428 ntTSL 2 BASIC18.61■□□□□ 0.57
CDH4P55283 SSR4P1-202ENST00000429427 967 ntTSL 5 BASIC18.61■□□□□ 0.57
CDH4P55283 DMKN-215ENST00000451297 1111 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
CDH4P55283 AK2-204ENST00000467905 880 ntAPPRIS ALT1 TSL 2 BASIC18.61■□□□□ 0.57
CDH4P55283 BOC-211ENST00000484034 1286 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
CDH4P55283 FOXP3-205ENST00000518685 1213 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
CDH4P55283 HOXB8-203ENST00000576562 743 ntAPPRIS ALT1 TSL 2 BASIC18.61■□□□□ 0.57
CDH4P55283 AC138430.1-201ENST00000586064 5409 ntTSL 2 BASIC18.61■□□□□ 0.57
CDH4P55283 SPAST-203ENST00000615843 5212 ntAPPRIS P4 TSL 1 (best) BASIC18.61■□□□□ 0.57
CDH4P55283 PCDH1-201ENST00000287008 4793 ntAPPRIS P3 TSL 5 BASIC18.61■□□□□ 0.57
CDH4P55283 TCERG1L-201ENST00000368642 2618 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CDH4P55283 KLHL40-201ENST00000287777 2517 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CDH4P55283 MED9-201ENST00000268711 2228 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CDH4P55283 CYTH1-209ENST00000589296 2159 ntTSL 5 BASIC18.61■□□□□ 0.57
CDH4P55283 SENP6-202ENST00000370010 4644 ntAPPRIS P3 TSL 1 (best) BASIC18.61■□□□□ 0.57
CDH4P55283 TIMM13-201ENST00000215570 1973 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CDH4P55283 FBLN7-205ENST00000409903 1989 ntTSL 5 BASIC18.61■□□□□ 0.57
CDH4P55283 RANBP10-201ENST00000317506 5341 ntAPPRIS P2 TSL 1 (best) BASIC18.6■□□□□ 0.57
CDH4P55283 RANBP10-209ENST00000630626 5305 ntAPPRIS ALT2 TSL 5 BASIC18.6■□□□□ 0.57
CDH4P55283 RGS20-203ENST00000344277 1667 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
CDH4P55283 LRRC23-209ENST00000443597 1628 ntAPPRIS P4 TSL 1 (best) BASIC18.6■□□□□ 0.57
CDH4P55283 C6orf141-206ENST00000529246 1450 ntAPPRIS P1 BASIC18.6■□□□□ 0.57
CDH4P55283 GTF3C5-202ENST00000372097 2406 ntAPPRIS P3 TSL 1 (best) BASIC18.6■□□□□ 0.57
CDH4P55283 ACVRL1-202ENST00000419526 1356 ntTSL 2 BASIC18.6■□□□□ 0.57
CDH4P55283 ANKS3-202ENST00000446014 2265 ntTSL 5 BASIC18.6■□□□□ 0.57
CDH4P55283 IGFBP4-201ENST00000269593 2200 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
CDH4P55283 SHBG-201ENST00000340624 1311 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
CDH4P55283 KRT18P1-202ENST00000452408 1331 ntBASIC18.6■□□□□ 0.57
CDH4P55283 CXorf40A-202ENST00000393985 1148 ntAPPRIS P3 TSL 1 (best) BASIC18.6■□□□□ 0.57
CDH4P55283 ING5-202ENST00000406941 946 ntAPPRIS ALT1 TSL 1 (best) BASIC18.6■□□□□ 0.57
CDH4P55283 AC131097.3-201ENST00000413820 1228 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
CDH4P55283 LINC01293-201ENST00000453951 1266 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
CDH4P55283 LAMTOR4-205ENST00000468582 621 ntTSL 2 BASIC18.6■□□□□ 0.57
CDH4P55283 RN7SL606P-201ENST00000472779 293 ntBASIC18.6■□□□□ 0.57
CDH4P55283 MTG1-205ENST00000477902 1283 ntTSL 3 BASIC18.6■□□□□ 0.57
CDH4P55283 PDCD6-207ENST00000509581 1156 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
CDH4P55283 TNNT1-204ENST00000585321 995 ntAPPRIS ALT2 TSL 5 BASIC18.6■□□□□ 0.57
CDH4P55283 AP002414.4-201ENST00000589764 1148 ntBASIC18.6■□□□□ 0.57
CDH4P55283 NEUROD2-201ENST00000302584 2041 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
CDH4P55283 ERLIN1-203ENST00000421367 5792 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
CDH4P55283 AC093677.2-201ENST00000600169 1863 ntBASIC18.6■□□□□ 0.57
CDH4P55283 METRN-204ENST00000568223 3325 ntAPPRIS P2 TSL 1 (best) BASIC18.6■□□□□ 0.57
CDH4P55283 SNX4-201ENST00000251775 2513 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
CDH4P55283 SLC22A18-203ENST00000380574 1755 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
CDH4P55283 ZIC4-212ENST00000484399 1774 ntAPPRIS P1 TSL 2 BASIC18.6■□□□□ 0.57
CDH4P55283 CDK11A-205ENST00000378633 2458 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
CDH4P55283 FBXL20-202ENST00000394294 2309 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
CDH4P55283 UAP1-204ENST00000367926 2294 ntAPPRIS P3 TSL 1 (best) BASIC18.6■□□□□ 0.57
CDH4P55283 IRF3-203ENST00000377139 1613 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
CDH4P55283 AC093010.1-201ENST00000473625 1624 ntBASIC18.6■□□□□ 0.57
CDH4P55283 SEMA3B-210ENST00000611067 2292 ntAPPRIS ALT2 TSL 1 (best) BASIC18.6■□□□□ 0.57
CDH4P55283 MID2-201ENST00000262843 2876 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
CDH4P55283 PSMD8-207ENST00000592035 1581 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
CDH4P55283 HSPB8-201ENST00000281938 2152 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
CDH4P55283 SDC1-203ENST00000403076 1523 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
CDH4P55283 FGFR1-203ENST00000341462 6054 ntTSL 5 BASIC18.59■□□□□ 0.57
CDH4P55283 CDK10-208ENST00000505473 1424 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
CDH4P55283 KDM4B-202ENST00000381759 3058 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
CDH4P55283 ATP1B1-201ENST00000367815 1883 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
CDH4P55283 ACOT7-202ENST00000377842 1813 ntAPPRIS ALT2 TSL 1 (best) BASIC18.59■□□□□ 0.57
CDH4P55283 GNAS-AS1-202ENST00000443966 2341 ntTSL 5 BASIC18.59■□□□□ 0.57
CDH4P55283 CARHSP1-201ENST00000311052 746 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
CDH4P55283 ROMO1-204ENST00000374078 498 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
CDH4P55283 MPIG6B-205ENST00000375810 910 ntAPPRIS ALT2 TSL 1 (best) BASIC18.59■□□□□ 0.57
CDH4P55283 DRAXINP1-201ENST00000437611 948 ntBASIC18.59■□□□□ 0.57
CDH4P55283 AC234772.2-201ENST00000456532 375 ntTSL 3 BASIC18.59■□□□□ 0.57
CDH4P55283 AL162258.2-202ENST00000469931 831 ntTSL 5 BASIC18.59■□□□□ 0.57
CDH4P55283 NUTF2-205ENST00000568396 1179 ntAPPRIS P1 TSL 3 BASIC18.59■□□□□ 0.57
CDH4P55283 CHRNB1-207ENST00000575379 1095 ntTSL 2 BASIC18.59■□□□□ 0.57
CDH4P55283 MIR3180-1-201ENST00000580374 94 ntBASIC18.59■□□□□ 0.57
CDH4P55283 MIR3180-3-201ENST00000584616 94 ntBASIC18.59■□□□□ 0.57
CDH4P55283 FCGRT-210ENST00000596975 1054 ntTSL 5 BASIC18.59■□□□□ 0.57
CDH4P55283 AL592071.1-201ENST00000611956 408 ntBASIC18.59■□□□□ 0.57
CDH4P55283 AC009154.2-201ENST00000621177 724 ntBASIC18.59■□□□□ 0.57
CDH4P55283 AC124864.1-201ENST00000623408 392 ntBASIC18.59■□□□□ 0.57
CDH4P55283 ADGRG2-210ENST00000379878 4803 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
CDH4P55283 CDK10-202ENST00000353379 1798 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
CDH4P55283 PLA2G2F-201ENST00000375102 2723 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
CDH4P55283 FOXP1-214ENST00000493089 2703 ntAPPRIS ALT1 TSL 2 BASIC18.59■□□□□ 0.57
CDH4P55283 SMARCD3-202ENST00000356800 1669 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
CDH4P55283 LRRC27-203ENST00000368613 2113 ntAPPRIS P3 TSL 1 (best) BASIC18.59■□□□□ 0.57
CDH4P55283 COPS7A-215ENST00000543155 2127 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
CDH4P55283 RBL2-201ENST00000262133 4906 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
CDH4P55283 IL34-201ENST00000288098 1607 ntAPPRIS P2 TSL 1 (best) BASIC18.59■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 34.2 ms