Protein–RNA interactions for Protein: P55072

VCP, Transitional endoplasmic reticulum ATPase, humanhuman

Known RBP Predictions only

Length 806 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCPP55072 AC135782.1-201ENST00000537498 2154 ntTSL 2 BASIC19.53■□□□□ 0.72
VCPP55072 TTC34-201ENST00000401095 8814 ntAPPRIS ALT2 TSL 5 BASIC19.53■□□□□ 0.72
VCPP55072 NUDT10-202ENST00000376006 2001 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
VCPP55072 GDF10-201ENST00000580279 2458 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
VCPP55072 ANKS3-201ENST00000304283 2662 ntAPPRIS P1 TSL 2 BASIC19.52■□□□□ 0.72
VCPP55072 AC116565.2-201ENST00000637674 1854 ntTSL 2 BASIC19.52■□□□□ 0.72
VCPP55072 NOM1-201ENST00000275820 6077 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
VCPP55072 NCK1-207ENST00000481752 1971 ntAPPRIS P1 TSL 5 BASIC19.52■□□□□ 0.72
VCPP55072 CA9-201ENST00000378357 1618 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
VCPP55072 LRRC23-201ENST00000007969 1615 ntAPPRIS P4 TSL 1 (best) BASIC19.52■□□□□ 0.72
VCPP55072 BANP-202ENST00000355022 2164 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
VCPP55072 WNK2-202ENST00000395477 6834 ntAPPRIS ALT2 TSL 5 BASIC19.52■□□□□ 0.72
VCPP55072 AURKAIP1-202ENST00000338338 1047 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
VCPP55072 RABL2B-209ENST00000435118 1126 ntAPPRIS P3 TSL 1 (best) BASIC19.52■□□□□ 0.72
VCPP55072 AC093459.1-201ENST00000444567 481 ntTSL 3 BASIC19.52■□□□□ 0.72
VCPP55072 LINC00599-204ENST00000521242 716 ntTSL 3 BASIC19.52■□□□□ 0.72
VCPP55072 PNN-202ENST00000553331 656 ntTSL 3 BASIC19.52■□□□□ 0.72
VCPP55072 LINC02317-201ENST00000555413 426 ntTSL 3 BASIC19.52■□□□□ 0.72
VCPP55072 MPI-205ENST00000562606 1052 ntTSL 3 BASIC19.52■□□□□ 0.72
VCPP55072 PPP1R1B-208ENST00000580825 1038 ntAPPRIS P1 TSL 5 BASIC19.52■□□□□ 0.72
VCPP55072 TYROBP-209ENST00000589517 415 ntAPPRIS ALT1 TSL 1 (best) BASIC19.52■□□□□ 0.72
VCPP55072 AC004076.1-201ENST00000596831 664 ntAPPRIS P1 TSL 2 BASIC19.52■□□□□ 0.72
VCPP55072 AL121772.3-201ENST00000610840 674 ntBASIC19.52■□□□□ 0.72
VCPP55072 NME4-212ENST00000621774 904 ntTSL 3 BASIC19.52■□□□□ 0.72
VCPP55072 NF2-203ENST00000353887 1845 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
VCPP55072 CRYZL1-203ENST00000381540 1482 ntTSL 2 BASIC19.52■□□□□ 0.72
VCPP55072 CPZ-201ENST00000315782 2136 ntAPPRIS P3 TSL 1 (best) BASIC19.52■□□□□ 0.72
VCPP55072 AC138028.1-201ENST00000333666 2137 ntTSL 2 BASIC19.52■□□□□ 0.72
VCPP55072 CLASRP-201ENST00000221455 2234 ntAPPRIS P2 TSL 1 (best) BASIC19.52■□□□□ 0.71
VCPP55072 UBE2Q2-208ENST00000569423 2969 ntTSL 2 BASIC19.52■□□□□ 0.71
VCPP55072 AP003774.1-201ENST00000316124 2340 ntTSL 2 BASIC19.52■□□□□ 0.71
VCPP55072 ZNF419-205ENST00000424930 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC19.52■□□□□ 0.71
VCPP55072 PCOLCE-AS1-201ENST00000442166 2537 ntTSL 2 BASIC19.52■□□□□ 0.71
VCPP55072 BICD1-207ENST00000551848 1962 ntBASIC19.52■□□□□ 0.71
VCPP55072 PRR14-202ENST00000300835 2198 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
VCPP55072 SPATA6L-207ENST00000475086 1444 ntAPPRIS P1 TSL 2 BASIC19.51■□□□□ 0.71
VCPP55072 WWOX-214ENST00000566780 2482 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
VCPP55072 TNFRSF1A-213ENST00000540022 1527 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
VCPP55072 CELF2-217ENST00000638035 1849 ntAPPRIS P3 TSL 5 BASIC19.51■□□□□ 0.71
VCPP55072 ZC3H12D-201ENST00000409806 5791 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
VCPP55072 IL17RC-215ENST00000455057 2244 ntAPPRIS ALT2 TSL 1 (best) BASIC19.51■□□□□ 0.71
VCPP55072 AL390961.4-201ENST00000623958 2535 ntBASIC19.51■□□□□ 0.71
VCPP55072 PCDHAC2-201ENST00000289269 5963 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
VCPP55072 PGLS-201ENST00000252603 1028 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
VCPP55072 SPAG16-207ENST00000432529 1250 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
VCPP55072 AC079385.1-202ENST00000549203 569 ntTSL 4 BASIC19.51■□□□□ 0.71
VCPP55072 ZNF549-203ENST00000594943 556 ntTSL 4 BASIC19.51■□□□□ 0.71
VCPP55072 CALM3-211ENST00000598871 561 ntTSL 4 BASIC19.51■□□□□ 0.71
VCPP55072 BX640515.1-201ENST00000617215 977 ntBASIC19.51■□□□□ 0.71
VCPP55072 MATN4-201ENST00000353917 1657 ntTSL 5 BASIC19.51■□□□□ 0.71
VCPP55072 IRF5-202ENST00000357234 1680 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
VCPP55072 CLN8-211ENST00000636934 1790 ntTSL 5 BASIC19.51■□□□□ 0.71
VCPP55072 ACTG1-201ENST00000331925 1994 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
VCPP55072 ZNF395-211ENST00000523202 2068 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
VCPP55072 TUBA4A-201ENST00000248437 2162 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
VCPP55072 AMIGO1-202ENST00000369864 5088 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
VCPP55072 AKAP17A-201ENST00000313871 3204 ntAPPRIS P2 TSL 1 (best) BASIC19.51■□□□□ 0.71
VCPP55072 CHD1L-204ENST00000431239 2907 ntTSL 5 BASIC19.51■□□□□ 0.71
VCPP55072 ATP1B1-202ENST00000367816 2608 ntAPPRIS P1 TSL 5 BASIC19.51■□□□□ 0.71
VCPP55072 AC018755.2-202ENST00000429354 1926 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
VCPP55072 IRF7-202ENST00000348655 1801 ntAPPRIS ALT2 TSL 1 (best) BASIC19.51■□□□□ 0.71
VCPP55072 TCP11-209ENST00000444780 1841 ntAPPRIS ALT2 TSL 2 BASIC19.51■□□□□ 0.71
VCPP55072 ATRN-201ENST00000262919 8633 ntAPPRIS P4 TSL 5 BASIC19.51■□□□□ 0.71
VCPP55072 PACRGL-203ENST00000444671 1720 ntTSL 2 BASIC19.51■□□□□ 0.71
VCPP55072 THNSL2-205ENST00000449349 1616 ntTSL 5 BASIC19.51■□□□□ 0.71
VCPP55072 APBB1-207ENST00000529519 1442 ntTSL 5 BASIC19.51■□□□□ 0.71
VCPP55072 SHBG-201ENST00000340624 1311 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
VCPP55072 PEX16-202ENST00000378750 1335 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
VCPP55072 KANSL1L-203ENST00000418791 3562 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
VCPP55072 SNAI3-AS1-205ENST00000568633 2096 ntBASIC19.5■□□□□ 0.71
VCPP55072 SYNM-202ENST00000336292 7394 ntAPPRIS P4 TSL 1 (best) BASIC19.5■□□□□ 0.71
VCPP55072 AC016757.1-205ENST00000470346 1888 ntTSL 2 BASIC19.5■□□□□ 0.71
VCPP55072 GTF2H4-202ENST00000376316 1673 ntAPPRIS P1 TSL 5 BASIC19.5■□□□□ 0.71
VCPP55072 UBXN2A-201ENST00000309033 6066 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
VCPP55072 BEGAIN-202ENST00000443071 2744 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
VCPP55072 KRT86-202ENST00000423955 2217 ntAPPRIS P1 TSL 2 BASIC19.5■□□□□ 0.71
VCPP55072 HINT1-201ENST00000304043 1081 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
VCPP55072 PTPMT1-201ENST00000326656 928 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
VCPP55072 WNT8B-201ENST00000343737 2112 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
VCPP55072 RAB4A-201ENST00000366690 2966 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
VCPP55072 GGT1-208ENST00000404920 657 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
VCPP55072 AL590627.1-203ENST00000421194 1026 ntBASIC19.5■□□□□ 0.71
VCPP55072 PMS2P1-201ENST00000431037 1228 ntBASIC19.5■□□□□ 0.71
VCPP55072 AL133343.2-201ENST00000457213 370 ntTSL 3 BASIC19.5■□□□□ 0.71
VCPP55072 RASA4DP-201ENST00000460726 1199 ntBASIC19.5■□□□□ 0.71
VCPP55072 GGTLC2-203ENST00000480559 657 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
VCPP55072 KLK12-205ENST00000529888 735 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
VCPP55072 AC092725.1-201ENST00000565783 499 ntTSL 4 BASIC19.5■□□□□ 0.71
VCPP55072 EFHC1-206ENST00000635760 2030 ntTSL 5 BASIC19.5■□□□□ 0.71
VCPP55072 CACTIN-201ENST00000221899 2797 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
VCPP55072 STRN3-202ENST00000357479 2799 ntAPPRIS P1 TSL 5 BASIC19.5■□□□□ 0.71
VCPP55072 AC008764.1-201ENST00000409035 2567 ntAPPRIS P1 TSL 2 BASIC19.5■□□□□ 0.71
VCPP55072 FOXI3-201ENST00000428390 2804 ntAPPRIS P1 TSL 3 BASIC19.5■□□□□ 0.71
VCPP55072 ZNF302-206ENST00000505242 2849 ntAPPRIS P3 TSL 1 (best) BASIC19.5■□□□□ 0.71
VCPP55072 AC011416.4-201ENST00000639283 2195 ntTSL 5 BASIC19.5■□□□□ 0.71
VCPP55072 EMX2-201ENST00000442245 2710 ntTSL 2 BASIC19.5■□□□□ 0.71
VCPP55072 SLC12A5-210ENST00000616202 2445 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
VCPP55072 AC114490.1-202ENST00000311990 1887 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
VCPP55072 P2RX2-206ENST00000389110 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC19.5■□□□□ 0.71
VCPP55072 GPT-202ENST00000394955 1885 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
Retrieved 100 of 98,524 protein–RNA pairs in 22.6 ms