Protein–RNA interactions for Protein: P49711

CTCF, Transcriptional repressor CTCF, humanhuman

Predicted RBP Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTCFP49711 AP000344.2-201ENST00000512987 629 ntBASIC21.07■□□□□ 0.96
CTCFP49711 BAX-213ENST00000539787 458 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
CTCFP49711 AL022328.2-201ENST00000608016 640 ntTSL 3 BASIC21.07■□□□□ 0.96
CTCFP49711 AP000867.4-201ENST00000641616 219 ntBASIC21.07■□□□□ 0.96
CTCFP49711 KCNN2-208ENST00000631899 2098 ntAPPRIS ALT2 TSL 5 BASIC21.07■□□□□ 0.96
CTCFP49711 CACNB2-203ENST00000352115 1911 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
CTCFP49711 SUMO3-204ENST00000411651 1921 ntTSL 2 BASIC21.07■□□□□ 0.96
CTCFP49711 PRKN-202ENST00000366892 1505 ntTSL 5 BASIC21.07■□□□□ 0.96
CTCFP49711 DBNL-213ENST00000452943 1513 ntTSL 2 BASIC21.07■□□□□ 0.96
CTCFP49711 RBPMS-210ENST00000520191 1613 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
CTCFP49711 TCP11-204ENST00000373979 1882 ntAPPRIS P3 TSL 5 BASIC21.07■□□□□ 0.96
CTCFP49711 DBN1-210ENST00000512501 1878 ntTSL 3 BASIC21.07■□□□□ 0.96
CTCFP49711 C19orf66-201ENST00000253110 2117 ntAPPRIS P3 TSL 2 BASIC21.07■□□□□ 0.96
CTCFP49711 RPRM-201ENST00000325926 1471 ntAPPRIS P1 BASIC21.07■□□□□ 0.96
CTCFP49711 GPN3-202ENST00000537466 1491 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
CTCFP49711 TOX2-205ENST00000423191 1709 ntTSL 2 BASIC21.07■□□□□ 0.96
CTCFP49711 ME3-202ENST00000393324 2240 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
CTCFP49711 KNOP1-205ENST00000568230 1311 ntAPPRIS ALT2 TSL 5 BASIC21.06■□□□□ 0.96
CTCFP49711 CSPG5-203ENST00000456150 2089 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
CTCFP49711 EBF1-202ENST00000380654 2345 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
CTCFP49711 TXNRD2-203ENST00000400519 3155 ntAPPRIS ALT2 TSL 1 (best) BASIC21.06■□□□□ 0.96
CTCFP49711 FA2H-201ENST00000219368 2424 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
CTCFP49711 CBWD3-201ENST00000360171 2165 ntAPPRIS P2 TSL 1 (best) BASIC21.06■□□□□ 0.96
CTCFP49711 EGLN2-202ENST00000406058 2150 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
CTCFP49711 AC104417.2-201ENST00000562989 1793 ntBASIC21.06■□□□□ 0.96
CTCFP49711 RASL12-201ENST00000220062 2640 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
CTCFP49711 DXO-203ENST00000375356 1533 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
CTCFP49711 AC093714.2-201ENST00000489626 763 ntTSL 3 BASIC21.06■□□□□ 0.96
CTCFP49711 MEIS3P1-201ENST00000495167 958 ntBASIC21.06■□□□□ 0.96
CTCFP49711 POLD4-211ENST00000539074 714 ntTSL 3 BASIC21.06■□□□□ 0.96
CTCFP49711 AC015712.1-203ENST00000559331 593 ntTSL 3 BASIC21.06■□□□□ 0.96
CTCFP49711 RNF151-202ENST00000569210 853 ntTSL 2 BASIC21.06■□□□□ 0.96
CTCFP49711 TK1-204ENST00000590430 683 ntTSL 3 BASIC21.06■□□□□ 0.96
CTCFP49711 AC011467.2-201ENST00000598425 242 ntBASIC21.06■□□□□ 0.96
CTCFP49711 ZFPL1-201ENST00000294258 1371 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
CTCFP49711 FAM172A-206ENST00000509163 1369 ntTSL 2 BASIC21.06■□□□□ 0.96
CTCFP49711 RNF38-204ENST00000357058 5254 ntAPPRIS P1 TSL 5 BASIC21.06■□□□□ 0.96
CTCFP49711 AC016065.1-201ENST00000500118 2413 ntTSL 2 BASIC21.06■□□□□ 0.96
CTCFP49711 MORF4L1-215ENST00000559345 1468 ntTSL 2 BASIC21.06■□□□□ 0.96
CTCFP49711 ADM-207ENST00000530439 1839 ntTSL 2 BASIC21.06■□□□□ 0.96
CTCFP49711 SPG7-202ENST00000341316 2288 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
CTCFP49711 KLC1-208ENST00000452929 2453 ntTSL 5 BASIC21.05■□□□□ 0.96
CTCFP49711 ZNF276-208ENST00000568064 2203 ntTSL 5 BASIC21.05■□□□□ 0.96
CTCFP49711 VPS53-201ENST00000291074 2656 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
CTCFP49711 ESR2-212ENST00000556275 2695 ntTSL 2 BASIC21.05■□□□□ 0.96
CTCFP49711 DEDD2-204ENST00000595337 1894 ntAPPRIS P3 TSL 3 BASIC21.05■□□□□ 0.96
CTCFP49711 PNKP-214ENST00000600573 1602 ntTSL 5 BASIC21.05■□□□□ 0.96
CTCFP49711 BAZ1B-202ENST00000404251 5428 ntAPPRIS P1 TSL 2 BASIC21.05■□□□□ 0.96
CTCFP49711 KCNH2-201ENST00000262186 4286 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
CTCFP49711 METTL26-201ENST00000301686 794 ntAPPRIS P1 TSL 2 BASIC21.05■□□□□ 0.96
CTCFP49711 NKAIN2-201ENST00000368416 1106 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
CTCFP49711 METTL26-205ENST00000397666 726 ntTSL 2 BASIC21.05■□□□□ 0.96
CTCFP49711 ESR1-204ENST00000406599 1251 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
CTCFP49711 PTPA-213ENST00000419582 952 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
CTCFP49711 MEG3-211ENST00000452514 461 ntTSL 3 BASIC21.05■□□□□ 0.96
CTCFP49711 PUS1-205ENST00000535067 838 ntTSL 3 BASIC21.05■□□□□ 0.96
CTCFP49711 AC025678.2-201ENST00000562061 970 ntBASIC21.05■□□□□ 0.96
CTCFP49711 AC099518.3-201ENST00000564808 809 ntAPPRIS P5 TSL 4 BASIC21.05■□□□□ 0.96
CTCFP49711 MRPL34-205ENST00000600434 793 ntAPPRIS P2 TSL 3 BASIC21.05■□□□□ 0.96
CTCFP49711 ME2-218ENST00000640965 2476 ntTSL 5 BASIC21.05■□□□□ 0.96
CTCFP49711 SBK1-201ENST00000341901 4992 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
CTCFP49711 TMEM104-202ENST00000417024 1781 ntTSL 2 BASIC21.05■□□□□ 0.96
CTCFP49711 MOK-225ENST00000522867 1883 ntTSL 5 BASIC21.05■□□□□ 0.96
CTCFP49711 SMOC2-206ENST00000535039 1875 ntTSL 5 BASIC21.05■□□□□ 0.96
CTCFP49711 PQLC2-201ENST00000375153 2153 ntAPPRIS P1 TSL 2 BASIC21.04■□□□□ 0.96
CTCFP49711 ZIM2-208ENST00000629319 2253 ntAPPRIS P1 TSL 5 BASIC21.04■□□□□ 0.96
CTCFP49711 MUS81-201ENST00000308110 2392 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
CTCFP49711 CIRBP-202ENST00000413636 1606 ntTSL 2 BASIC21.04■□□□□ 0.96
CTCFP49711 ULK2-202ENST00000395544 6010 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
CTCFP49711 CSNK1D-203ENST00000392334 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC21.04■□□□□ 0.96
CTCFP49711 PCBP4-212ENST00000484633 2009 ntTSL 5 BASIC21.04■□□□□ 0.96
CTCFP49711 AC008556.1-201ENST00000610908 2040 ntBASIC21.04■□□□□ 0.96
CTCFP49711 CCDC91-207ENST00000539107 2440 ntTSL 5 BASIC21.04■□□□□ 0.96
CTCFP49711 ENSA-205ENST00000361532 792 ntTSL 2 BASIC21.04■□□□□ 0.96
CTCFP49711 C6orf48-204ENST00000375639 712 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
CTCFP49711 HLA-DRB6-201ENST00000411500 1235 ntBASIC21.04■□□□□ 0.96
CTCFP49711 SIGLEC30P-201ENST00000455569 941 ntBASIC21.04■□□□□ 0.96
CTCFP49711 TERF1P3-201ENST00000505638 1227 ntBASIC21.04■□□□□ 0.96
CTCFP49711 HOXD8-204ENST00000544999 1235 ntAPPRIS ALT2 TSL 5 BASIC21.04■□□□□ 0.96
CTCFP49711 SMIM22-210ENST00000615471 928 ntAPPRIS ALT2 TSL 3 BASIC21.04■□□□□ 0.96
CTCFP49711 ALDH3A1-202ENST00000395555 1495 ntTSL 3 BASIC21.04■□□□□ 0.96
CTCFP49711 SOX12-201ENST00000342665 4630 ntAPPRIS P1 BASIC21.04■□□□□ 0.96
CTCFP49711 NCK2-205ENST00000451463 1795 ntTSL 2 BASIC21.04■□□□□ 0.96
CTCFP49711 AC114490.1-202ENST00000311990 1887 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
CTCFP49711 EFCAB11-202ENST00000538485 1870 ntTSL 2 BASIC21.04■□□□□ 0.96
CTCFP49711 MCC-208ENST00000514701 2855 ntTSL 2 BASIC21.04■□□□□ 0.96
CTCFP49711 CHST8-203ENST00000438847 2133 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
CTCFP49711 SSH3-202ENST00000308298 2046 ntTSL 2 BASIC21.04■□□□□ 0.96
CTCFP49711 SLC22A1-201ENST00000324965 1521 ntTSL 5 BASIC21.04■□□□□ 0.96
CTCFP49711 DPYSL4-202ENST00000368627 1545 ntTSL 5 BASIC21.04■□□□□ 0.96
CTCFP49711 C8orf46-215ENST00000522977 1347 ntTSL 2 BASIC21.04■□□□□ 0.96
CTCFP49711 USP25-202ENST00000285681 5216 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
CTCFP49711 MAP3K14-AS1-203ENST00000585780 2475 ntTSL 2 BASIC21.03■□□□□ 0.96
CTCFP49711 CRELD1-206ENST00000452070 1778 ntAPPRIS P1 TSL 2 BASIC21.03■□□□□ 0.96
CTCFP49711 LHX6-201ENST00000340587 3457 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
CTCFP49711 TM2D3-207ENST00000559107 1353 ntTSL 3 BASIC21.03■□□□□ 0.96
CTCFP49711 CDC42BPB-201ENST00000361246 6758 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
CTCFP49711 AC019103.1-201ENST00000503095 272 ntTSL 3 BASIC21.03■□□□□ 0.96
CTCFP49711 KLK12-203ENST00000525263 1077 ntAPPRIS ALT2 TSL 1 (best) BASIC21.03■□□□□ 0.96
CTCFP49711 AL031432.2-201ENST00000566714 459 ntBASIC21.03■□□□□ 0.96
Retrieved 100 of 98,524 protein–RNA pairs in 52.5 ms