Protein–RNA interactions for Protein: P18887

XRCC1, DNA repair protein XRCC1, humanhuman

Predicted RBP Predictions only

Length 633 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
XRCC1P18887 ZDHHC20-201ENST00000320220 1351 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
XRCC1P18887 CCNI2-201ENST00000378731 2355 ntAPPRIS P3 TSL 1 (best) BASIC18.22■□□□□ 0.51
XRCC1P18887 SMPD3-201ENST00000219334 5453 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
XRCC1P18887 C8orf58-207ENST00000615223 1848 ntAPPRIS ALT2 TSL 5 BASIC18.22■□□□□ 0.51
XRCC1P18887 AC093620.1-201ENST00000342963 583 ntTSL 3 BASIC18.22■□□□□ 0.51
XRCC1P18887 ZNF32-201ENST00000374433 1137 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
XRCC1P18887 MED4-202ENST00000378586 931 ntAPPRIS ALT2 TSL 2 BASIC18.22■□□□□ 0.51
XRCC1P18887 AL161452.1-201ENST00000415062 1117 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
XRCC1P18887 GRAMD4P1-201ENST00000435181 1110 ntBASIC18.22■□□□□ 0.51
XRCC1P18887 AL359075.1-203ENST00000462729 1002 ntBASIC18.22■□□□□ 0.51
XRCC1P18887 RBPMS-AS1-202ENST00000519753 1031 ntTSL 5 BASIC18.22■□□□□ 0.51
XRCC1P18887 GRP-204ENST00000529320 824 ntAPPRIS ALT2 TSL 1 (best) BASIC18.22■□□□□ 0.51
XRCC1P18887 C12orf76-204ENST00000547573 607 ntTSL 3 BASIC18.22■□□□□ 0.51
XRCC1P18887 CLN6-204ENST00000564752 900 ntTSL 3 BASIC18.22■□□□□ 0.51
XRCC1P18887 EEF2KMT-206ENST00000587133 873 ntAPPRIS ALT2 TSL 3 BASIC18.22■□□□□ 0.51
XRCC1P18887 ELAVL1-202ENST00000593807 856 ntTSL 3 BASIC18.22■□□□□ 0.51
XRCC1P18887 DNAJB6-218ENST00000634080 1005 ntTSL 2 BASIC18.22■□□□□ 0.51
XRCC1P18887 TEKT5-201ENST00000283025 1612 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
XRCC1P18887 PTTG1IP-203ENST00000397887 2413 ntTSL 4 BASIC18.22■□□□□ 0.51
XRCC1P18887 KRT81-202ENST00000615839 1505 ntAPPRIS ALT2 TSL 5 BASIC18.22■□□□□ 0.51
XRCC1P18887 THOP1-201ENST00000307741 4804 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
XRCC1P18887 ARHGAP8-202ENST00000356099 1584 ntAPPRIS P3 TSL 1 (best) BASIC18.21■□□□□ 0.51
XRCC1P18887 YPEL3-202ENST00000398841 1588 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
XRCC1P18887 TCEA1-208ENST00000521604 2858 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
XRCC1P18887 CRTC1-201ENST00000321949 2501 ntAPPRIS P3 TSL 1 (best) BASIC18.21■□□□□ 0.51
XRCC1P18887 MINPP1-201ENST00000371994 2183 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
XRCC1P18887 PLEKHG5-201ENST00000340850 4715 ntAPPRIS P3 TSL 5 BASIC18.21■□□□□ 0.51
XRCC1P18887 PLEKHG5-211ENST00000535355 4725 ntAPPRIS ALT2 TSL 2 BASIC18.21■□□□□ 0.51
XRCC1P18887 KHDC1-201ENST00000257765 1134 ntAPPRIS P3 TSL 1 (best) BASIC18.21■□□□□ 0.51
XRCC1P18887 ENSA-205ENST00000361532 792 ntTSL 2 BASIC18.21■□□□□ 0.51
XRCC1P18887 KRT18P38-201ENST00000449496 1282 ntBASIC18.21■□□□□ 0.51
XRCC1P18887 LCN10-205ENST00000497771 723 ntAPPRIS P2 TSL 1 (best) BASIC18.21■□□□□ 0.51
XRCC1P18887 CNTD2-203ENST00000513948 787 ntAPPRIS ALT2 TSL 2 BASIC18.21■□□□□ 0.51
XRCC1P18887 TMEM220-AS1-201ENST00000579114 575 ntTSL 4 BASIC18.21■□□□□ 0.51
XRCC1P18887 RPARP-AS1-206ENST00000596366 631 ntTSL 3 BASIC18.21■□□□□ 0.51
XRCC1P18887 AC010422.3-201ENST00000597692 838 ntAPPRIS P1 TSL 2 BASIC18.21■□□□□ 0.51
XRCC1P18887 KHDC1-207ENST00000610435 1101 ntAPPRIS P3 TSL 5 BASIC18.21■□□□□ 0.51
XRCC1P18887 PKD2-201ENST00000237596 5056 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
XRCC1P18887 GALNT2-201ENST00000366672 4454 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
XRCC1P18887 GCSH-208ENST00000639169 2537 ntTSL 2 BASIC18.21■□□□□ 0.51
XRCC1P18887 KDM1A-201ENST00000356634 3033 ntAPPRIS P3 TSL 1 (best) BASIC18.21■□□□□ 0.51
XRCC1P18887 ARID3C-201ENST00000378909 1411 ntAPPRIS P1 TSL 2 BASIC18.21■□□□□ 0.51
XRCC1P18887 KRT8P7-201ENST00000533003 1432 ntBASIC18.21■□□□□ 0.51
XRCC1P18887 KLHDC4-227ENST00000622456 1422 ntTSL 5 BASIC18.21■□□□□ 0.51
XRCC1P18887 AC018755.2-202ENST00000429354 1926 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
XRCC1P18887 RIPK2-201ENST00000220751 2584 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
XRCC1P18887 SLC9A6-201ENST00000370695 4725 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
XRCC1P18887 CYB561-205ENST00000542042 1302 ntTSL 2 BASIC18.21■□□□□ 0.51
XRCC1P18887 GAB1-201ENST00000262994 2648 ntAPPRIS ALT1 TSL 1 (best) BASIC18.2■□□□□ 0.5
XRCC1P18887 PYGL-201ENST00000216392 3048 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
XRCC1P18887 P2RX2-206ENST00000389110 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC18.2■□□□□ 0.5
XRCC1P18887 NECTIN3-211ENST00000493615 1876 ntAPPRIS ALT2 TSL 2 BASIC18.2■□□□□ 0.5
XRCC1P18887 P2RX2-208ENST00000542301 1881 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
XRCC1P18887 KLF13-201ENST00000307145 6825 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
XRCC1P18887 TCF4-201ENST00000354452 3482 ntAPPRIS ALT1 TSL 5 BASIC18.2■□□□□ 0.5
XRCC1P18887 PLPP4-202ENST00000398250 1521 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
XRCC1P18887 TMEM176A-210ENST00000484928 1530 ntAPPRIS P2 TSL 5 BASIC18.2■□□□□ 0.5
XRCC1P18887 IL17RC-206ENST00000416074 2342 ntAPPRIS ALT2 TSL 1 (best) BASIC18.2■□□□□ 0.5
XRCC1P18887 UBXN2A-201ENST00000309033 6066 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
XRCC1P18887 NR2C2-206ENST00000425241 2494 ntAPPRIS P1 TSL 2 BASIC18.2■□□□□ 0.5
XRCC1P18887 CCM2-207ENST00000475551 2471 ntAPPRIS ALT2 TSL 2 BASIC18.2■□□□□ 0.5
XRCC1P18887 CDK4-202ENST00000312990 1650 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
XRCC1P18887 TSSC4-201ENST00000333256 1686 ntAPPRIS P3 TSL 1 (best) BASIC18.2■□□□□ 0.5
XRCC1P18887 MATN4-201ENST00000353917 1657 ntTSL 5 BASIC18.2■□□□□ 0.5
XRCC1P18887 CHTOP-202ENST00000368687 1094 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
XRCC1P18887 GGT1-205ENST00000403838 1033 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
XRCC1P18887 FIS1-207ENST00000474120 915 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
XRCC1P18887 LINC00599-204ENST00000521242 716 ntTSL 3 BASIC18.2■□□□□ 0.5
XRCC1P18887 GOLGA2P7-203ENST00000557881 896 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
XRCC1P18887 AC239803.1-201ENST00000594189 1278 ntTSL 5 BASIC18.2■□□□□ 0.5
XRCC1P18887 ZNF534-205ENST00000617900 1085 ntTSL 2 BASIC18.2■□□□□ 0.5
XRCC1P18887 GOLGA2P10-205ENST00000618267 983 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
XRCC1P18887 AC112497.1-201ENST00000624824 639 ntBASIC18.2■□□□□ 0.5
XRCC1P18887 AL772307.1-201ENST00000639363 1066 ntTSL 2 BASIC18.2■□□□□ 0.5
XRCC1P18887 MAP4K4-204ENST00000350198 7316 ntTSL 5 BASIC18.2■□□□□ 0.5
XRCC1P18887 PPP1R7-201ENST00000234038 2386 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
XRCC1P18887 BMP8B-201ENST00000372827 4822 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
XRCC1P18887 HARBI1-201ENST00000326737 1967 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
XRCC1P18887 MYO9A-214ENST00000566885 5111 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
XRCC1P18887 ALKBH4-201ENST00000292566 2105 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
XRCC1P18887 LYSMD4-201ENST00000332728 2847 ntTSL 4 BASIC18.2■□□□□ 0.5
XRCC1P18887 FADS2-209ENST00000521849 1703 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
XRCC1P18887 LINC00466-207ENST00000634725 1736 ntTSL 5 BASIC18.2■□□□□ 0.5
XRCC1P18887 RIOX2-201ENST00000333396 5347 ntAPPRIS ALT1 TSL 1 (best) BASIC18.2■□□□□ 0.5
XRCC1P18887 RNFT2-204ENST00000407967 2415 ntTSL 5 BASIC18.2■□□□□ 0.5
XRCC1P18887 BBS5-202ENST00000392663 3107 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
XRCC1P18887 NDUFB9-206ENST00000522532 1319 ntTSL 2 BASIC18.2■□□□□ 0.5
XRCC1P18887 IQSEC1-201ENST00000273221 5279 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
XRCC1P18887 C9orf66-201ENST00000382387 2918 ntAPPRIS P1 BASIC18.19■□□□□ 0.5
XRCC1P18887 KDM4B-202ENST00000381759 3058 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
XRCC1P18887 MLLT1-201ENST00000252674 4507 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
XRCC1P18887 NCF1B-201ENST00000423083 1516 ntTSL 2 BASIC18.19■□□□□ 0.5
XRCC1P18887 GAS7-210ENST00000579158 1528 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
XRCC1P18887 DLK1-202ENST00000341267 4722 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
XRCC1P18887 POMT2-201ENST00000261534 4876 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
XRCC1P18887 OLFM1-201ENST00000252854 2591 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
XRCC1P18887 CACNA1A-246ENST00000637736 8340 ntAPPRIS ALT2 TSL 5 BASIC18.19■□□□□ 0.5
XRCC1P18887 AGTRAP-201ENST00000314340 1107 ntAPPRIS P3 TSL 1 (best) BASIC18.19■□□□□ 0.5
XRCC1P18887 HCLS1-201ENST00000314583 2000 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
XRCC1P18887 TRIM50-201ENST00000333149 2047 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 55.6 ms