Protein–RNA interactions for Protein: P12004

PCNA, Proliferating cell nuclear antigen, humanhuman

Predictions only

Length 261 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCNAP12004 KRT18P23-201ENST00000435622 1283 ntBASIC17.8■□□□□ 0.44
PCNAP12004 LINC01184-202ENST00000501173 949 ntTSL 5 BASIC17.8■□□□□ 0.44
PCNAP12004 AP006621.4-201ENST00000527021 532 ntTSL 5 BASIC17.8■□□□□ 0.44
PCNAP12004 RAB2A-211ENST00000531289 1058 ntTSL 2 BASIC17.8■□□□□ 0.44
PCNAP12004 PRR29-205ENST00000579184 1052 ntAPPRIS ALT2 TSL 2 BASIC17.8■□□□□ 0.44
PCNAP12004 KCNN4-209ENST00000615047 2029 ntTSL 5 BASIC17.8■□□□□ 0.44
PCNAP12004 TMC6-202ENST00000322914 2786 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
PCNAP12004 MFSD14A-201ENST00000370152 2777 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
PCNAP12004 FAM53A-207ENST00000489363 2776 ntTSL 2 BASIC17.8■□□□□ 0.44
PCNAP12004 SGSM2-202ENST00000426855 4734 ntAPPRIS ALT1 TSL 1 (best) BASIC17.8■□□□□ 0.44
PCNAP12004 SCARB1-203ENST00000415380 2731 ntTSL 2 BASIC17.8■□□□□ 0.44
PCNAP12004 ACSM2A-201ENST00000219054 1988 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
PCNAP12004 SARAF-214ENST00000545648 1976 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
PCNAP12004 ING5-201ENST00000313552 5196 ntAPPRIS P3 TSL 1 (best) BASIC17.8■□□□□ 0.44
PCNAP12004 OGFOD2-205ENST00000454694 1488 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
PCNAP12004 ABALON-201ENST00000629058 1903 ntBASIC17.8■□□□□ 0.44
PCNAP12004 SCARB2-201ENST00000264896 4792 ntAPPRIS P2 TSL 1 (best) BASIC17.8■□□□□ 0.44
PCNAP12004 SYT8-202ENST00000381968 1424 ntAPPRIS P2 TSL 5 BASIC17.8■□□□□ 0.44
PCNAP12004 QRICH1-201ENST00000357496 3083 ntAPPRIS P1 TSL 2 BASIC17.8■□□□□ 0.44
PCNAP12004 PTPN21-208ENST00000556564 6166 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
PCNAP12004 PDZD3-202ENST00000355547 2252 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
PCNAP12004 AC020916.1-201ENST00000587762 1774 ntBASIC17.79■□□□□ 0.44
PCNAP12004 CMPK2-201ENST00000256722 2884 ntAPPRIS P3 TSL 1 (best) BASIC17.79■□□□□ 0.44
PCNAP12004 PRDM8-203ENST00000504452 3706 ntAPPRIS P1 TSL 5 BASIC17.79■□□□□ 0.44
PCNAP12004 PPP1R7-201ENST00000234038 2386 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
PCNAP12004 ETV7-202ENST00000340181 1719 ntAPPRIS P3 TSL 1 (best) BASIC17.79■□□□□ 0.44
PCNAP12004 MAFG-202ENST00000392366 1743 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
PCNAP12004 PTDSS1-202ENST00000517309 5177 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
PCNAP12004 YAP1-209ENST00000537274 5350 ntAPPRIS ALT2 TSL 5 BASIC17.79■□□□□ 0.44
PCNAP12004 ZCWPW1-201ENST00000360951 2110 ntAPPRIS ALT2 TSL 2 BASIC17.79■□□□□ 0.44
PCNAP12004 AC009487.1-202ENST00000437683 402 ntTSL 2 BASIC17.79■□□□□ 0.44
PCNAP12004 GXYLT1P6-201ENST00000456472 1187 ntBASIC17.79■□□□□ 0.44
PCNAP12004 SIGLEC15-202ENST00000546268 1054 ntTSL 2 BASIC17.79■□□□□ 0.44
PCNAP12004 AC004448.5-201ENST00000579897 567 ntTSL 5 BASIC17.79■□□□□ 0.44
PCNAP12004 AC010653.2-201ENST00000623505 997 ntBASIC17.79■□□□□ 0.44
PCNAP12004 EBLN3P-205ENST00000629870 958 ntTSL 3 BASIC17.79■□□□□ 0.44
PCNAP12004 COQ9-210ENST00000567072 1482 ntTSL 3 BASIC17.79■□□□□ 0.44
PCNAP12004 CACNA1A-214ENST00000614285 8410 ntAPPRIS ALT2 TSL 5 BASIC17.79■□□□□ 0.44
PCNAP12004 KDM6A-213ENST00000611820 5924 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
PCNAP12004 GSTZ1-204ENST00000393734 1424 ntTSL 5 BASIC17.79■□□□□ 0.44
PCNAP12004 KRT8P50-201ENST00000562022 1438 ntBASIC17.79■□□□□ 0.44
PCNAP12004 CORO6-212ENST00000584969 1416 ntAPPRIS ALT1 TSL 5 BASIC17.79■□□□□ 0.44
PCNAP12004 FAM20A-205ENST00000592554 2955 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
PCNAP12004 ANKRD18DP-201ENST00000335478 2171 ntTSL 2 BASIC17.79■□□□□ 0.44
PCNAP12004 AC027097.1-202ENST00000592201 1954 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
PCNAP12004 DOC2A-208ENST00000564944 1782 ntAPPRIS P1 TSL 5 BASIC17.79■□□□□ 0.44
PCNAP12004 SNTB2-201ENST00000336278 9789 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
PCNAP12004 TRAPPC12-201ENST00000324266 2508 ntAPPRIS P2 TSL 1 (best) BASIC17.78■□□□□ 0.44
PCNAP12004 CBL-204ENST00000634840 4813 ntAPPRIS ALT2 TSL 5 BASIC17.78■□□□□ 0.44
PCNAP12004 MRPS7-204ENST00000579761 1717 ntTSL 2 BASIC17.78■□□□□ 0.44
PCNAP12004 SNHG10-201ENST00000500370 1531 ntTSL 2 BASIC17.78■□□□□ 0.44
PCNAP12004 CHTOP-201ENST00000368686 2250 ntTSL 2 BASIC17.78■□□□□ 0.44
PCNAP12004 PPP4C-202ENST00000561610 1333 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
PCNAP12004 TRAF3IP1-201ENST00000373327 4279 ntAPPRIS P3 TSL 1 (best) BASIC17.78■□□□□ 0.44
PCNAP12004 ZNF74-201ENST00000357502 2788 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
PCNAP12004 PRSS23-209ENST00000533902 2043 ntTSL 4 BASIC17.78■□□□□ 0.44
PCNAP12004 RAB4B-EGLN2-201ENST00000594136 2554 ntAPPRIS P1 TSL 2 BASIC17.78■□□□□ 0.44
PCNAP12004 TFEB-201ENST00000230323 2354 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
PCNAP12004 UQCRQ-201ENST00000378665 586 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
PCNAP12004 ZFYVE1-202ENST00000394207 1183 ntTSL 2 BASIC17.78■□□□□ 0.44
PCNAP12004 ACP1-205ENST00000407983 703 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
PCNAP12004 RNF144A-AS1-204ENST00000437589 618 ntTSL 2 BASIC17.78■□□□□ 0.44
PCNAP12004 PHB2-202ENST00000440277 996 ntTSL 5 BASIC17.78■□□□□ 0.44
PCNAP12004 ECEL1P2-202ENST00000465689 757 ntBASIC17.78■□□□□ 0.44
PCNAP12004 KRT8P12-201ENST00000468527 998 ntTSL 2 BASIC17.78■□□□□ 0.44
PCNAP12004 REPIN1-210ENST00000482680 1029 ntTSL 2 BASIC17.78■□□□□ 0.44
PCNAP12004 SLC39A2-203ENST00000554422 1259 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
PCNAP12004 JOSD2-204ENST00000598418 996 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
PCNAP12004 ADPGK-AS1-201ENST00000563592 2730 ntTSL 2 BASIC17.78■□□□□ 0.44
PCNAP12004 MINPP1-201ENST00000371994 2183 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
PCNAP12004 ADAM23-201ENST00000264377 6330 ntAPPRIS P2 TSL 1 (best) BASIC17.78■□□□□ 0.44
PCNAP12004 DNAJC28-201ENST00000314399 1625 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
PCNAP12004 ACTG1-201ENST00000331925 1994 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
PCNAP12004 GOLGA6L2-204ENST00000567107 3030 ntAPPRIS P2 TSL 5 BASIC17.78■□□□□ 0.44
PCNAP12004 PPHLN1-213ENST00000549190 1777 ntTSL 5 BASIC17.78■□□□□ 0.44
PCNAP12004 INO80E-207ENST00000563197 2103 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
PCNAP12004 ZNF280D-205ENST00000559000 4726 ntAPPRIS ALT2 TSL 2 BASIC17.78■□□□□ 0.44
PCNAP12004 HMGXB3-206ENST00000613459 5567 ntAPPRIS ALT2 TSL 5 BASIC17.78■□□□□ 0.44
PCNAP12004 AL355987.1-201ENST00000435202 2420 ntAPPRIS P1 TSL 2 BASIC17.78■□□□□ 0.44
PCNAP12004 TBC1D20-201ENST00000354200 4466 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
PCNAP12004 EGFL7-204ENST00000406555 1529 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
PCNAP12004 USP39-201ENST00000323701 2177 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
PCNAP12004 KLF6-204ENST00000469435 2169 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
PCNAP12004 SUFU-201ENST00000369899 1839 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
PCNAP12004 KCNIP4-205ENST00000382152 1767 ntTSL 5 BASIC17.77■□□□□ 0.44
PCNAP12004 FOXP1-214ENST00000493089 2703 ntAPPRIS ALT1 TSL 2 BASIC17.77■□□□□ 0.44
PCNAP12004 CRAT-202ENST00000393384 973 ntTSL 2 BASIC17.77■□□□□ 0.44
PCNAP12004 KCTD7-202ENST00000443322 1160 ntAPPRIS ALT1 TSL 1 (best) BASIC17.77■□□□□ 0.44
PCNAP12004 ANK1-211ENST00000522231 1060 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
PCNAP12004 ANK1-212ENST00000522543 1160 ntTSL 2 BASIC17.77■□□□□ 0.44
PCNAP12004 CCDC28A-203ENST00000617445 1240 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
PCNAP12004 PCDHB2-202ENST00000622947 2231 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
PCNAP12004 ARID3C-201ENST00000378909 1411 ntAPPRIS P1 TSL 2 BASIC17.77■□□□□ 0.44
PCNAP12004 FCER2-201ENST00000346664 1596 ntAPPRIS P2 TSL 1 (best) BASIC17.77■□□□□ 0.44
PCNAP12004 FCER2-205ENST00000597921 1560 ntAPPRIS P2 TSL 1 (best) BASIC17.77■□□□□ 0.44
PCNAP12004 ZNF114-206ENST00000600687 1742 ntAPPRIS P1 TSL 5 BASIC17.77■□□□□ 0.44
PCNAP12004 KAT2A-201ENST00000225916 3109 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
PCNAP12004 CALHM2-201ENST00000260743 1859 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
PCNAP12004 SLC26A11-212ENST00000572725 1862 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
PCNAP12004 ZNF512B-201ENST00000369888 5919 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 24.9 ms