Protein–RNA interactions for Protein: O75445

USH2A, Usherin, humanhuman

Predictions only

Length 5,202 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USH2AO75445 AC008687.7-201ENST00000593309 920 ntTSL 1 (best) BASIC8.09□□□□□ -1.11
USH2AO75445 ARHGEF2-204ENST00000368315 1645 ntTSL 5 BASIC8.09□□□□□ -1.11
USH2AO75445 ZNF580-202ENST00000543039 1707 ntAPPRIS P1 BASIC8.09□□□□□ -1.11
USH2AO75445 RNF135-201ENST00000324689 1905 ntTSL 1 (best) BASIC8.09□□□□□ -1.11
USH2AO75445 CHRNA3-202ENST00000348639 2030 ntTSL 1 (best) BASIC8.09□□□□□ -1.11
USH2AO75445 PSMD11-202ENST00000457654 2159 ntAPPRIS P1 TSL 2 BASIC8.09□□□□□ -1.11
USH2AO75445 PABPC1L2A-201ENST00000373519 2237 ntAPPRIS P1 BASIC8.09□□□□□ -1.11
USH2AO75445 ITGBL1-206ENST00000618057 2368 ntTSL 1 (best) BASIC8.09□□□□□ -1.11
USH2AO75445 POLR2I-201ENST00000221859 913 ntAPPRIS P1 TSL 1 (best) BASIC8.09□□□□□ -1.11
USH2AO75445 VMO1-202ENST00000354194 651 ntTSL 1 (best) BASIC8.09□□□□□ -1.11
USH2AO75445 ARTN-206ENST00000472435 402 ntTSL 3 BASIC8.09□□□□□ -1.11
USH2AO75445 NAA50-208ENST00000497255 789 ntTSL 5 BASIC8.09□□□□□ -1.11
USH2AO75445 SERBP1P5-201ENST00000510079 1181 ntBASIC8.09□□□□□ -1.11
USH2AO75445 AP000344.2-201ENST00000512987 629 ntBASIC8.09□□□□□ -1.11
USH2AO75445 AC138474.1-201ENST00000586630 523 ntTSL 3 BASIC8.09□□□□□ -1.11
USH2AO75445 AC004832.1-201ENST00000610936 1005 ntTSL 5 BASIC8.09□□□□□ -1.11
USH2AO75445 BSG-215ENST00000618006 1329 ntTSL 2 BASIC8.09□□□□□ -1.11
USH2AO75445 AP003717.1-202ENST00000537019 1412 ntTSL 5 BASIC8.09□□□□□ -1.11
USH2AO75445 SLC25A47-201ENST00000361529 1738 ntAPPRIS P1 TSL 1 (best) BASIC8.09□□□□□ -1.11
USH2AO75445 UBAP1-204ENST00000625521 2029 ntTSL 2 BASIC8.09□□□□□ -1.11
USH2AO75445 HACD1-202ENST00000361271 2237 ntAPPRIS P1 TSL 1 (best) BASIC8.09□□□□□ -1.11
USH2AO75445 ZNF331-202ENST00000411977 2248 ntAPPRIS P1 TSL 1 (best) BASIC8.09□□□□□ -1.11
USH2AO75445 HAND2-AS1-237ENST00000616485 2420 ntTSL 2 BASIC8.09□□□□□ -1.11
USH2AO75445 UXT-202ENST00000335890 701 ntTSL 1 (best) BASIC8.09□□□□□ -1.11
USH2AO75445 QRFP-201ENST00000343079 411 ntAPPRIS P1 BASIC8.09□□□□□ -1.11
USH2AO75445 AL596325.1-201ENST00000563991 1082 ntBASIC8.09□□□□□ -1.11
USH2AO75445 AC005759.1-201ENST00000594805 855 ntTSL 3 BASIC8.09□□□□□ -1.11
USH2AO75445 ZEB1-AS1-209ENST00000607455 559 ntTSL 4 BASIC8.09□□□□□ -1.11
USH2AO75445 LINC01666-201ENST00000623794 845 ntTSL 5 BASIC8.09□□□□□ -1.11
USH2AO75445 FKBP4-208ENST00000630279 156 ntTSL 5 BASIC8.09□□□□□ -1.11
USH2AO75445 GLB1-202ENST00000307377 2018 ntTSL 1 (best) BASIC8.09□□□□□ -1.11
USH2AO75445 ABHD14B-202ENST00000361143 1636 ntAPPRIS P1 TSL 1 (best) BASIC8.09□□□□□ -1.11
USH2AO75445 TUBB3P1-201ENST00000405796 1332 ntBASIC8.09□□□□□ -1.11
USH2AO75445 LINC01011-201ENST00000445000 2811 ntTSL 2 BASIC8.09□□□□□ -1.11
USH2AO75445 MARK2-211ENST00000513765 2671 ntAPPRIS ALT2 TSL 1 (best) BASIC8.09□□□□□ -1.11
USH2AO75445 RBFOX1-215ENST00000553186 2196 ntTSL 1 (best) BASIC8.09□□□□□ -1.11
USH2AO75445 TEAD2-201ENST00000311227 2164 ntAPPRIS P3 TSL 1 (best) BASIC8.09□□□□□ -1.11
USH2AO75445 CHTOP-204ENST00000368694 2096 ntAPPRIS P3 TSL 1 (best) BASIC8.09□□□□□ -1.11
USH2AO75445 FIP1L1-201ENST00000306932 1878 ntAPPRIS ALT2 TSL 1 (best) BASIC8.09□□□□□ -1.11
USH2AO75445 UBE2I-207ENST00000406620 1842 ntAPPRIS P1 TSL 2 BASIC8.09□□□□□ -1.11
USH2AO75445 CYP2F1-201ENST00000331105 1720 ntAPPRIS P1 TSL 1 (best) BASIC8.09□□□□□ -1.11
USH2AO75445 FAM66B-202ENST00000606573 2630 ntTSL 1 (best) BASIC8.09□□□□□ -1.11
USH2AO75445 YIF1B-203ENST00000339413 1225 ntAPPRIS P1 TSL 1 (best) BASIC8.09□□□□□ -1.11
USH2AO75445 GYG2P1-204ENST00000382966 639 ntTSL 3 BASIC8.09□□□□□ -1.11
USH2AO75445 NAGK-205ENST00000443938 1221 ntAPPRIS ALT1 TSL 5 BASIC8.09□□□□□ -1.11
USH2AO75445 AP000777.2-201ENST00000539897 501 ntTSL 4 BASIC8.09□□□□□ -1.11
USH2AO75445 AC015712.1-203ENST00000559331 593 ntTSL 3 BASIC8.09□□□□□ -1.11
USH2AO75445 AC009154.2-201ENST00000621177 724 ntBASIC8.09□□□□□ -1.11
USH2AO75445 BEST2-201ENST00000042931 1908 ntAPPRIS P1 TSL 1 (best) BASIC8.09□□□□□ -1.12
USH2AO75445 NTN5-201ENST00000270235 1836 ntAPPRIS P1 TSL 1 (best) BASIC8.09□□□□□ -1.12
USH2AO75445 P2RY6-201ENST00000349767 1700 ntAPPRIS P1 TSL 2 BASIC8.09□□□□□ -1.12
USH2AO75445 PMPCAP1-201ENST00000508114 1576 ntBASIC8.09□□□□□ -1.12
USH2AO75445 ITPRIPL1-205ENST00000536814 1947 ntAPPRIS P1 TSL 3 BASIC8.08□□□□□ -1.12
USH2AO75445 U91328.1-201ENST00000437528 223 ntBASIC8.08□□□□□ -1.12
USH2AO75445 MRPL52-210ENST00000555345 895 ntTSL 2 BASIC8.08□□□□□ -1.12
USH2AO75445 MRPL52-211ENST00000555536 451 ntTSL 3 BASIC8.08□□□□□ -1.12
USH2AO75445 SYNDIG1-201ENST00000376862 2522 ntAPPRIS P1 TSL 1 (best) BASIC8.08□□□□□ -1.12
USH2AO75445 SOX10-201ENST00000360880 2861 ntAPPRIS P1 TSL 1 (best) BASIC8.08□□□□□ -1.12
USH2AO75445 RAB11FIP4-201ENST00000394744 1968 ntTSL 2 BASIC8.08□□□□□ -1.12
USH2AO75445 USP48-205ENST00000421625 2818 ntTSL 2 BASIC8.08□□□□□ -1.12
USH2AO75445 GADD45B-201ENST00000215631 1373 ntAPPRIS P1 TSL 1 (best) BASIC8.08□□□□□ -1.12
USH2AO75445 PORCN-205ENST00000367574 1368 ntAPPRIS ALT1 TSL 1 (best) BASIC8.08□□□□□ -1.12
USH2AO75445 AC011840.1-202ENST00000436477 1351 ntTSL 2 BASIC8.08□□□□□ -1.12
USH2AO75445 PORCN-214ENST00000537758 1371 ntAPPRIS ALT1 TSL 1 (best) BASIC8.08□□□□□ -1.12
USH2AO75445 MRGPRF-203ENST00000441623 2282 ntAPPRIS P1 TSL 2 BASIC8.08□□□□□ -1.12
USH2AO75445 NARF-204ENST00000390006 1766 ntTSL 2 BASIC8.08□□□□□ -1.12
USH2AO75445 VPS9D1-AS1-202ENST00000562866 1753 ntTSL 2 BASIC8.08□□□□□ -1.12
USH2AO75445 HHEX-203ENST00000492654 808 ntTSL 1 (best) BASIC8.08□□□□□ -1.12
USH2AO75445 GTF2IRD2-205ENST00000614386 578 ntTSL 1 (best) BASIC8.08□□□□□ -1.12
USH2AO75445 EML2-201ENST00000245925 2264 ntAPPRIS P3 TSL 1 (best) BASIC8.08□□□□□ -1.12
USH2AO75445 AL390879.2-201ENST00000424306 2222 ntTSL 2 BASIC8.08□□□□□ -1.12
USH2AO75445 CBWD1-201ENST00000314367 1771 ntTSL 1 (best) BASIC8.08□□□□□ -1.12
USH2AO75445 RTBDN-207ENST00000589272 2076 ntTSL 2 BASIC8.08□□□□□ -1.12
USH2AO75445 SIX5-201ENST00000317578 3318 ntAPPRIS P2 TSL 1 (best) BASIC8.08□□□□□ -1.12
USH2AO75445 P3H4-202ENST00000393928 2601 ntAPPRIS P2 TSL 1 (best) BASIC8.08□□□□□ -1.12
USH2AO75445 RAB5C-202ENST00000393860 1912 ntAPPRIS P1 TSL 1 (best) BASIC8.08□□□□□ -1.12
USH2AO75445 LY6G6C-201ENST00000375819 992 ntAPPRIS P1 TSL 1 (best) BASIC8.08□□□□□ -1.12
USH2AO75445 C9orf24-204ENST00000379127 596 ntTSL 3 BASIC8.08□□□□□ -1.12
USH2AO75445 IL32-205ENST00000396890 1067 ntAPPRIS ALT2 TSL 1 (best) BASIC8.08□□□□□ -1.12
USH2AO75445 CRB3P1-201ENST00000449338 276 ntBASIC8.08□□□□□ -1.12
USH2AO75445 IFITM3-202ENST00000526811 543 ntAPPRIS ALT1 TSL 5 BASIC8.08□□□□□ -1.12
USH2AO75445 IL32-223ENST00000534507 1112 ntAPPRIS ALT2 TSL 2 BASIC8.08□□□□□ -1.12
USH2AO75445 IL32-227ENST00000548652 812 ntAPPRIS ALT2 TSL 3 BASIC8.08□□□□□ -1.12
USH2AO75445 IL32-233ENST00000552664 731 ntAPPRIS P4 TSL 3 BASIC8.08□□□□□ -1.12
USH2AO75445 LINC01220-201ENST00000558575 715 ntTSL 1 (best) BASIC8.08□□□□□ -1.12
USH2AO75445 FSTL3-202ENST00000588773 746 ntTSL 2 BASIC8.08□□□□□ -1.12
USH2AO75445 AL590999.1-203ENST00000606829 542 ntTSL 4 BASIC8.08□□□□□ -1.12
USH2AO75445 LIMS2-201ENST00000324938 2111 ntAPPRIS P3 TSL 1 (best) BASIC8.08□□□□□ -1.12
USH2AO75445 RASSF1-201ENST00000327761 1757 ntTSL 1 (best) BASIC8.08□□□□□ -1.12
USH2AO75445 PRSS33-204ENST00000576886 1755 ntTSL 1 (best) BASIC8.08□□□□□ -1.12
USH2AO75445 MIXL1-201ENST00000366810 2005 ntAPPRIS P1 TSL 1 (best) BASIC8.08□□□□□ -1.12
USH2AO75445 EIF2B4-210ENST00000493344 1949 ntTSL 5 BASIC8.08□□□□□ -1.12
USH2AO75445 ALDH7A1-215ENST00000553117 1935 ntTSL 2 BASIC8.08□□□□□ -1.12
USH2AO75445 KLK5-201ENST00000336334 1563 ntAPPRIS P1 TSL 1 (best) BASIC8.08□□□□□ -1.12
USH2AO75445 LGALS7B-201ENST00000314980 483 ntAPPRIS P1 TSL 1 (best) BASIC8.08□□□□□ -1.12
USH2AO75445 C22orf39-201ENST00000333059 1221 ntAPPRIS P1 TSL 1 (best) BASIC8.08□□□□□ -1.12
USH2AO75445 DUSP12-201ENST00000367943 1270 ntAPPRIS P1 TSL 1 (best) BASIC8.08□□□□□ -1.12
USH2AO75445 AL121832.1-203ENST00000433121 475 ntTSL 3 BASIC8.08□□□□□ -1.12
USH2AO75445 B4GALT1-AS1-202ENST00000442432 843 ntTSL 2 BASIC8.08□□□□□ -1.12
USH2AO75445 H3F3B-208ENST00000589599 576 ntAPPRIS P1 TSL 3 BASIC8.08□□□□□ -1.12
Retrieved 100 of 98,524 protein–RNA pairs in 36.7 ms