Protein–RNA interactions for Protein: O75112

LDB3, LIM domain-binding protein 3, humanhuman

Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3O75112 ASL-204ENST00000395331 1538 ntTSL 5 BASIC17.19■□□□□ 0.34
LDB3O75112 CIAO1-203ENST00000488633 1533 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
LDB3O75112 RNF146-201ENST00000309649 2624 ntAPPRIS P3 TSL 4 BASIC17.19■□□□□ 0.34
LDB3O75112 A4GALT-201ENST00000249005 2020 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
LDB3O75112 SOD2-206ENST00000452684 2045 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
LDB3O75112 ZNF696-201ENST00000330143 2795 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
LDB3O75112 MMD2-202ENST00000404774 2415 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
LDB3O75112 EFR3A-201ENST00000254624 5438 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
LDB3O75112 DAG1-219ENST00000538711 5582 ntAPPRIS P1 TSL 5 BASIC17.19■□□□□ 0.34
LDB3O75112 RXRB-202ENST00000374685 2846 ntAPPRIS ALT1 TSL 1 (best) BASIC17.19■□□□□ 0.34
LDB3O75112 PIP4K2C-202ENST00000422156 1558 ntTSL 2 BASIC17.19■□□□□ 0.34
LDB3O75112 ORC5-201ENST00000297431 1958 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
LDB3O75112 DSCAM-201ENST00000400454 8552 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
LDB3O75112 CENPT-215ENST00000564817 1638 ntAPPRIS ALT2 TSL 5 BASIC17.18■□□□□ 0.34
LDB3O75112 UBE2E1-202ENST00000346855 1398 ntTSL 3 BASIC17.18■□□□□ 0.34
LDB3O75112 USP32-201ENST00000300896 5171 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
LDB3O75112 ARPC4-201ENST00000397261 2582 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
LDB3O75112 RPH3A-203ENST00000543106 2581 ntAPPRIS ALT2 TSL 2 BASIC17.18■□□□□ 0.34
LDB3O75112 ADAM33-202ENST00000356518 3677 ntAPPRIS P3 TSL 1 (best) BASIC17.18■□□□□ 0.34
LDB3O75112 LARGE2-206ENST00000529052 2459 ntAPPRIS ALT2 TSL 2 BASIC17.18■□□□□ 0.34
LDB3O75112 KRT13-201ENST00000246635 1699 ntAPPRIS P4 TSL 1 (best) BASIC17.18■□□□□ 0.34
LDB3O75112 HLA-F-217ENST00000334668 1283 ntAPPRIS ALT2 BASIC17.18■□□□□ 0.34
LDB3O75112 HLA-F-220ENST00000434407 884 ntBASIC17.18■□□□□ 0.34
LDB3O75112 AP003396.3-201ENST00000530918 778 ntTSL 5 BASIC17.18■□□□□ 0.34
LDB3O75112 ATP6V0C-203ENST00000565223 668 ntTSL 3 BASIC17.18■□□□□ 0.34
LDB3O75112 ATP6V0C-204ENST00000568562 477 ntTSL 3 BASIC17.18■□□□□ 0.34
LDB3O75112 DHRS2-210ENST00000611765 1287 ntAPPRIS ALT2 TSL 2 BASIC17.18■□□□□ 0.34
LDB3O75112 AC083849.1-201ENST00000615227 514 ntBASIC17.18■□□□□ 0.34
LDB3O75112 NUMBL-207ENST00000598779 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC17.18■□□□□ 0.34
LDB3O75112 WDR45-205ENST00000376358 1432 ntTSL 2 BASIC17.18■□□□□ 0.34
LDB3O75112 ELP5-204ENST00000396628 1423 ntAPPRIS P2 TSL 1 (best) BASIC17.18■□□□□ 0.34
LDB3O75112 CHRND-201ENST00000258385 2112 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
LDB3O75112 RAB11FIP2-202ENST00000369199 6119 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
LDB3O75112 FIBCD1-201ENST00000372337 1868 ntTSL 5 BASIC17.18■□□□□ 0.34
LDB3O75112 LRRC43-201ENST00000339777 2028 ntAPPRIS P2 TSL 5 BASIC17.18■□□□□ 0.34
LDB3O75112 TMEM155-201ENST00000337677 2313 ntAPPRIS P2 TSL 1 (best) BASIC17.18■□□□□ 0.34
LDB3O75112 GGNBP2-210ENST00000611219 2315 ntTSL 2 BASIC17.18■□□□□ 0.34
LDB3O75112 CDK10-202ENST00000353379 1798 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
LDB3O75112 RAPH1-201ENST00000308091 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC17.17■□□□□ 0.34
LDB3O75112 DPYSL4-202ENST00000368627 1545 ntTSL 5 BASIC17.17■□□□□ 0.34
LDB3O75112 FKBP3-201ENST00000216330 1684 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
LDB3O75112 SEL1L3-202ENST00000399878 4520 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
LDB3O75112 NDUFAF2-201ENST00000296597 719 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
LDB3O75112 HOPX-201ENST00000317745 1129 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
LDB3O75112 DDRGK1-202ENST00000380201 1128 ntTSL 2 BASIC17.17■□□□□ 0.34
LDB3O75112 MAGI2-AS3-203ENST00000424477 520 ntTSL 4 BASIC17.17■□□□□ 0.34
LDB3O75112 VENTXP5-201ENST00000523979 775 ntBASIC17.17■□□□□ 0.34
LDB3O75112 CLDN7-204ENST00000571881 735 ntTSL 3 BASIC17.17■□□□□ 0.34
LDB3O75112 RNASET2-213ENST00000611959 1124 ntTSL 5 BASIC17.17■□□□□ 0.34
LDB3O75112 FBXO41-205ENST00000521871 7336 ntAPPRIS P1 TSL 5 BASIC17.17■□□□□ 0.34
LDB3O75112 PLEKHG5-201ENST00000340850 4715 ntAPPRIS P3 TSL 5 BASIC17.17■□□□□ 0.34
LDB3O75112 PLEKHG5-211ENST00000535355 4725 ntAPPRIS ALT2 TSL 2 BASIC17.17■□□□□ 0.34
LDB3O75112 AATF-208ENST00000619387 2141 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
LDB3O75112 CDC25B-202ENST00000340833 1978 ntAPPRIS ALT2 TSL 1 (best) BASIC17.17■□□□□ 0.34
LDB3O75112 ERLIN1-203ENST00000421367 5792 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
LDB3O75112 ESAM-201ENST00000278927 1826 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
LDB3O75112 RGS20-203ENST00000344277 1667 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
LDB3O75112 ECE1-203ENST00000374893 2484 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
LDB3O75112 RNF113B-201ENST00000267291 1376 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
LDB3O75112 CRELD2-201ENST00000328268 1357 ntAPPRIS P3 TSL 1 (best) BASIC17.16■□□□□ 0.34
LDB3O75112 RNH1-201ENST00000354420 1894 ntAPPRIS P1 TSL 5 BASIC17.16■□□□□ 0.34
LDB3O75112 MID1IP1-202ENST00000378474 1889 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
LDB3O75112 AC093677.2-201ENST00000600169 1863 ntBASIC17.16■□□□□ 0.34
LDB3O75112 CD1E-205ENST00000368160 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC17.16■□□□□ 0.34
LDB3O75112 AC087500.1-202ENST00000571689 1715 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
LDB3O75112 KIF21B-203ENST00000422435 5519 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
LDB3O75112 TBC1D3I-202ENST00000618620 1900 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
LDB3O75112 AC063977.6-201ENST00000600074 1763 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
LDB3O75112 MRPL24-202ENST00000368211 883 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
LDB3O75112 LCN8-201ENST00000371688 867 ntAPPRIS P2 TSL 1 (best) BASIC17.16■□□□□ 0.34
LDB3O75112 AL031133.1-201ENST00000406807 723 ntBASIC17.16■□□□□ 0.34
LDB3O75112 AC004540.1-201ENST00000439120 891 ntTSL 2 BASIC17.16■□□□□ 0.34
LDB3O75112 MYD88-206ENST00000443433 914 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
LDB3O75112 PEX5L-206ENST00000465751 2147 ntAPPRIS ALT2 TSL 2 BASIC17.16■□□□□ 0.34
LDB3O75112 LCN10-205ENST00000497771 723 ntAPPRIS P2 TSL 1 (best) BASIC17.16■□□□□ 0.34
LDB3O75112 KRT18P35-201ENST00000510488 1269 ntBASIC17.16■□□□□ 0.34
LDB3O75112 LY6E-213ENST00000522528 606 ntTSL 3 BASIC17.16■□□□□ 0.34
LDB3O75112 AC127526.4-201ENST00000527970 983 ntTSL 3 BASIC17.16■□□□□ 0.34
LDB3O75112 AC087388.1-201ENST00000571370 1112 ntBASIC17.16■□□□□ 0.34
LDB3O75112 EEF2KMT-206ENST00000587133 873 ntAPPRIS ALT2 TSL 3 BASIC17.16■□□□□ 0.34
LDB3O75112 RPARP-AS1-206ENST00000596366 631 ntTSL 3 BASIC17.16■□□□□ 0.34
LDB3O75112 PXK-206ENST00000463280 2825 ntTSL 2 BASIC17.16■□□□□ 0.34
LDB3O75112 BICD1-207ENST00000551848 1962 ntBASIC17.16■□□□□ 0.34
LDB3O75112 NADK-201ENST00000341426 3235 ntAPPRIS P3 TSL 2 BASIC17.16■□□□□ 0.34
LDB3O75112 SLC22A23-203ENST00000406686 5658 ntAPPRIS P2 TSL 5 BASIC17.16■□□□□ 0.34
LDB3O75112 SHKBP1-201ENST00000291842 2363 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
LDB3O75112 FAM131A-202ENST00000340957 2421 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
LDB3O75112 BSCL2-201ENST00000278893 1364 ntAPPRIS ALT2 TSL 2 BASIC17.15■□□□□ 0.34
LDB3O75112 ADCK5-201ENST00000308860 1949 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
LDB3O75112 NTRK1-201ENST00000358660 2492 ntAPPRIS ALT2 TSL 2 BASIC17.15■□□□□ 0.34
LDB3O75112 KCNC4-203ENST00000413138 3018 ntAPPRIS ALT2 TSL 5 BASIC17.15■□□□□ 0.34
LDB3O75112 PRKAR1B-212ENST00000544935 2494 ntAPPRIS P1 TSL 5 BASIC17.15■□□□□ 0.34
LDB3O75112 LONP1-201ENST00000360614 3236 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
LDB3O75112 ANKS3-201ENST00000304283 2662 ntAPPRIS P1 TSL 2 BASIC17.15■□□□□ 0.34
LDB3O75112 GPATCH3-201ENST00000361720 2123 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
LDB3O75112 PHGDH-209ENST00000641074 1780 ntBASIC17.15■□□□□ 0.34
LDB3O75112 ZNF668-202ENST00000394983 2717 ntAPPRIS P1 TSL 5 BASIC17.15■□□□□ 0.34
LDB3O75112 SSC5D-201ENST00000389623 4845 ntAPPRIS P3 TSL 1 (best) BASIC17.15■□□□□ 0.34
LDB3O75112 CNIH3-201ENST00000272133 2558 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
LDB3O75112 IRS2-201ENST00000375856 8138 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 35.1 ms