Protein–RNA interactions for Protein: O60663

LMX1B, LIM homeobox transcription factor 1-beta, humanhuman

Predictions only

Length 402 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1BO60663 IVNS1ABP-202ENST00000367498 4199 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
LMX1BO60663 CHRM4-201ENST00000433765 1511 ntAPPRIS P1 BASIC16.07■□□□□ 0.16
LMX1BO60663 CXorf40A-208ENST00000434353 1524 ntAPPRIS ALT1 TSL 5 BASIC16.07■□□□□ 0.16
LMX1BO60663 DOC2A-209ENST00000564979 1630 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
LMX1BO60663 BMS1P4-202ENST00000584747 1716 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
LMX1BO60663 TBXA2R-204ENST00000589966 1814 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
LMX1BO60663 HNRNPK-202ENST00000360384 2038 ntAPPRIS ALT1 TSL 1 (best) BASIC16.07■□□□□ 0.16
LMX1BO60663 DDX17-211ENST00000640332 2190 ntAPPRIS P3 TSL 1 (best) BASIC16.07■□□□□ 0.16
LMX1BO60663 DDX17-212ENST00000640668 2196 ntAPPRIS ALT2 TSL 1 (best) BASIC16.07■□□□□ 0.16
LMX1BO60663 SPPL2C-201ENST00000329196 2238 ntAPPRIS P1 BASIC16.07■□□□□ 0.16
LMX1BO60663 ANKRD9-201ENST00000286918 6727 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
LMX1BO60663 ATRIP-203ENST00000357105 2403 ntTSL 2 BASIC16.07■□□□□ 0.16
LMX1BO60663 B4GALT2-202ENST00000356836 2629 ntAPPRIS P1 TSL 2 BASIC16.07■□□□□ 0.16
LMX1BO60663 XXYLT1-201ENST00000310380 2727 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
LMX1BO60663 SIM2-201ENST00000290399 4442 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
LMX1BO60663 BMP8B-201ENST00000372827 4822 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
LMX1BO60663 LMTK2-201ENST00000297293 8946 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
LMX1BO60663 SGSM2-201ENST00000268989 4863 ntAPPRIS P3 TSL 1 (best) BASIC16.06■□□□□ 0.16
LMX1BO60663 NUDT19-201ENST00000397061 2967 ntAPPRIS P1 TSL 2 BASIC16.06■□□□□ 0.16
LMX1BO60663 SPSB4-201ENST00000310546 2908 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
LMX1BO60663 ZNF211-203ENST00000299871 2577 ntAPPRIS ALT2 TSL 3 BASIC16.06■□□□□ 0.16
LMX1BO60663 HOTAIR-201ENST00000424518 2421 ntTSL 5 BASIC16.06■□□□□ 0.16
LMX1BO60663 TACSTD2-201ENST00000371225 2351 ntAPPRIS P1 BASIC16.06■□□□□ 0.16
LMX1BO60663 TRMT6-201ENST00000203001 2327 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
LMX1BO60663 MMP9-201ENST00000372330 2336 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
LMX1BO60663 ZNF419-204ENST00000415379 2186 ntAPPRIS ALT2 TSL 2 BASIC16.06■□□□□ 0.16
LMX1BO60663 EFHC1-206ENST00000635760 2030 ntTSL 5 BASIC16.06■□□□□ 0.16
LMX1BO60663 ZSWIM5-201ENST00000359600 5819 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
LMX1BO60663 PHLDA1-202ENST00000602540 5741 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
LMX1BO60663 POR-209ENST00000439269 1858 ntTSL 2 BASIC16.06■□□□□ 0.16
LMX1BO60663 GPAT2P1-201ENST00000444924 1672 ntBASIC16.06■□□□□ 0.16
LMX1BO60663 RUBCN-206ENST00000449205 1603 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
LMX1BO60663 C19orf57-208ENST00000591586 1559 ntAPPRIS ALT2 TSL 5 BASIC16.06■□□□□ 0.16
LMX1BO60663 INTS11-249ENST00000618806 1523 ntTSL 2 BASIC16.06■□□□□ 0.16
LMX1BO60663 NUDT17-201ENST00000334513 1473 ntAPPRIS P1 TSL 5 BASIC16.06■□□□□ 0.16
LMX1BO60663 COMMD1-201ENST00000311832 911 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
LMX1BO60663 C7orf50-203ENST00000397100 1264 ntAPPRIS P2 TSL 3 BASIC16.06■□□□□ 0.16
LMX1BO60663 UBE2C-206ENST00000405520 641 ntTSL 2 BASIC16.06■□□□□ 0.16
LMX1BO60663 AC092647.4-201ENST00000457211 535 ntBASIC16.06■□□□□ 0.16
LMX1BO60663 FAM86C2P-201ENST00000525180 435 ntTSL 4 BASIC16.06■□□□□ 0.16
LMX1BO60663 TMEM41B-203ENST00000527813 803 ntTSL 5 BASIC16.06■□□□□ 0.16
LMX1BO60663 BVES-AS1-203ENST00000580511 853 ntTSL 5 BASIC16.06■□□□□ 0.16
LMX1BO60663 OAZ1-211ENST00000602676 1148 ntAPPRIS P3 TSL 5 BASIC16.06■□□□□ 0.16
LMX1BO60663 UBE2C-208ENST00000617055 705 ntTSL 3 BASIC16.06■□□□□ 0.16
LMX1BO60663 CADPS2-202ENST00000334010 6045 ntAPPRIS ALT2 TSL 5 BASIC16.06■□□□□ 0.16
LMX1BO60663 FAM222A-201ENST00000358906 2731 ntAPPRIS P1 TSL 5 BASIC16.06■□□□□ 0.16
LMX1BO60663 KCNC2-203ENST00000393288 2485 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
LMX1BO60663 RELA-226ENST00000612991 2266 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
LMX1BO60663 SMPD3-211ENST00000568373 2073 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
LMX1BO60663 AZIN1-201ENST00000337198 4721 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
LMX1BO60663 SHISA3-201ENST00000319234 1971 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
LMX1BO60663 RNF135-201ENST00000324689 1905 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
LMX1BO60663 RASSF1-201ENST00000327761 1757 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
LMX1BO60663 MARK2-207ENST00000502399 2885 ntAPPRIS ALT2 TSL 5 BASIC16.05■□□□□ 0.16
LMX1BO60663 AL109659.2-201ENST00000606809 1674 ntBASIC16.05■□□□□ 0.16
LMX1BO60663 TCEA1-201ENST00000396401 2718 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
LMX1BO60663 FAM50B-201ENST00000380272 1628 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
LMX1BO60663 SLC25A29-215ENST00000556505 1540 ntTSL 2 BASIC16.05■□□□□ 0.16
LMX1BO60663 FOXD4L1-201ENST00000306507 2491 ntAPPRIS P1 BASIC16.05■□□□□ 0.16
LMX1BO60663 AL139099.2-201ENST00000555043 2469 ntTSL 2 BASIC16.05■□□□□ 0.16
LMX1BO60663 C14orf180-201ENST00000331952 1455 ntAPPRIS ALT2 TSL 2 BASIC16.05■□□□□ 0.16
LMX1BO60663 SHANK3-203ENST00000445220 5175 ntAPPRIS ALT2 TSL 5 BASIC16.05■□□□□ 0.16
LMX1BO60663 MLF2-202ENST00000435120 1379 ntAPPRIS P1 TSL 2 BASIC16.05■□□□□ 0.16
LMX1BO60663 COL4A3BP-201ENST00000261415 2262 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
LMX1BO60663 CDH22-203ENST00000537909 3902 ntAPPRIS P1 TSL 2 BASIC16.05■□□□□ 0.16
LMX1BO60663 TPD52L1-202ENST00000368388 2147 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
LMX1BO60663 AL023284.2-201ENST00000405850 579 ntBASIC16.05■□□□□ 0.16
LMX1BO60663 FAM8A6P-201ENST00000407496 1135 ntBASIC16.05■□□□□ 0.16
LMX1BO60663 AC007563.2-201ENST00000447289 552 ntTSL 5 BASIC16.05■□□□□ 0.16
LMX1BO60663 NT5C2-211ENST00000470299 249 ntTSL 5 BASIC16.05■□□□□ 0.16
LMX1BO60663 TNFSF13-208ENST00000483039 959 ntTSL 2 BASIC16.05■□□□□ 0.16
LMX1BO60663 FAM53C-211ENST00000513056 923 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
LMX1BO60663 ETS1-207ENST00000531611 2134 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
LMX1BO60663 AL929554.1-201ENST00000568665 460 ntAPPRIS P1 TSL 3 BASIC16.05■□□□□ 0.16
LMX1BO60663 METTL23-204ENST00000586752 904 ntTSL 2 BASIC16.05■□□□□ 0.16
LMX1BO60663 RNF165-206ENST00000590330 1049 ntTSL 2 BASIC16.05■□□□□ 0.16
LMX1BO60663 ACSS2-201ENST00000253382 2925 ntTSL 2 BASIC16.05■□□□□ 0.16
LMX1BO60663 TP73-AS1-203ENST00000423764 2875 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
LMX1BO60663 PIGZ-202ENST00000412723 2701 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
LMX1BO60663 GATB-213ENST00000515812 1893 ntTSL 5 BASIC16.05■□□□□ 0.16
LMX1BO60663 GFY-201ENST00000576655 1876 ntAPPRIS P1 TSL 5 BASIC16.05■□□□□ 0.16
LMX1BO60663 MBD1-208ENST00000398493 1845 ntTSL 5 BASIC16.05■□□□□ 0.16
LMX1BO60663 MCCC1-201ENST00000265594 2545 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
LMX1BO60663 QSOX2-201ENST00000358701 4530 ntAPPRIS P1 TSL 2 BASIC16.05■□□□□ 0.16
LMX1BO60663 GOLGA6L2-204ENST00000567107 3030 ntAPPRIS P2 TSL 5 BASIC16.05■□□□□ 0.16
LMX1BO60663 MAN1A1-201ENST00000368468 5014 ntAPPRIS P1 TSL 2 BASIC16.05■□□□□ 0.16
LMX1BO60663 AC012615.6-201ENST00000593201 1697 ntTSL 2 BASIC16.05■□□□□ 0.16
LMX1BO60663 ARMC10-209ENST00000454559 2347 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
LMX1BO60663 TM2D2-201ENST00000397070 1631 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
LMX1BO60663 C18orf21-205ENST00000592875 1581 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
LMX1BO60663 ZNF454-202ENST00000519564 2142 ntAPPRIS P1 TSL 2 BASIC16.04■□□□□ 0.16
LMX1BO60663 MRPL3-202ENST00000425847 1457 ntTSL 2 BASIC16.04■□□□□ 0.16
LMX1BO60663 SSC5D-201ENST00000389623 4845 ntAPPRIS P3 TSL 1 (best) BASIC16.04■□□□□ 0.16
LMX1BO60663 STX11-201ENST00000367568 1926 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
LMX1BO60663 SMN2-202ENST00000380742 1388 ntAPPRIS ALT2 TSL 5 BASIC16.04■□□□□ 0.16
LMX1BO60663 MOAP1-201ENST00000298894 2441 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
LMX1BO60663 CALM2-201ENST00000272298 1302 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
LMX1BO60663 MYZAP-201ENST00000267853 2361 ntAPPRIS P3 TSL 1 (best) BASIC16.04■□□□□ 0.16
LMX1BO60663 CD70-201ENST00000245903 913 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
LMX1BO60663 ZCCHC24-201ENST00000372333 906 ntTSL 2 BASIC16.04■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 48.9 ms