Protein–RNA interactions for Protein: O00257

CBX4, E3 SUMO-protein ligase CBX4, humanhuman

Predictions only

Length 560 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CBX4O00257 SH3BP1-201ENST00000357436 2852 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
CBX4O00257 GJA8-201ENST00000369235 1302 ntAPPRIS P1 BASIC18.64■□□□□ 0.57
CBX4O00257 VOPP1-201ENST00000285279 2962 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
CBX4O00257 EVPL-202ENST00000586740 6223 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
CBX4O00257 DHRS4L2-201ENST00000335125 1370 ntAPPRIS P2 TSL 1 (best) BASIC18.64■□□□□ 0.57
CBX4O00257 RPL3-201ENST00000216146 1442 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
CBX4O00257 GRM2-204ENST00000442933 2064 ntTSL 5 BASIC18.64■□□□□ 0.57
CBX4O00257 UBN1-201ENST00000262376 6252 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
CBX4O00257 WT1-205ENST00000452863 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
CBX4O00257 STRADB-202ENST00000392249 2190 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
CBX4O00257 GMCL1P1-201ENST00000463439 1581 ntBASIC18.64■□□□□ 0.57
CBX4O00257 Z83836.1-201ENST00000624605 1642 ntBASIC18.63■□□□□ 0.57
CBX4O00257 TIMM8A-201ENST00000372902 1664 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
CBX4O00257 ZCCHC17-205ENST00000615916 1652 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
CBX4O00257 COL18A1-202ENST00000355480 5924 ntAPPRIS P3 TSL 1 (best) BASIC18.63■□□□□ 0.57
CBX4O00257 SPERT-202ENST00000378966 1842 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
CBX4O00257 AP003356.1-202ENST00000517910 2770 ntTSL 2 BASIC18.63■□□□□ 0.57
CBX4O00257 ADAMTS9-202ENST00000459780 2871 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
CBX4O00257 GNGT2-201ENST00000300406 889 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
CBX4O00257 EGLN2-201ENST00000303961 2102 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
CBX4O00257 CDC26-201ENST00000374206 872 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
CBX4O00257 ISG15-201ENST00000379389 711 ntAPPRIS P2 TSL 1 (best) BASIC18.63■□□□□ 0.57
CBX4O00257 UFSP1-201ENST00000388761 996 ntAPPRIS P1 BASIC18.63■□□□□ 0.57
CBX4O00257 TSPY22P-201ENST00000427496 604 ntBASIC18.63■□□□□ 0.57
CBX4O00257 MHENCR-202ENST00000449500 801 ntTSL 2 BASIC18.63■□□□□ 0.57
CBX4O00257 HOXB-AS3-203ENST00000465846 434 ntTSL 3 BASIC18.63■□□□□ 0.57
CBX4O00257 ACY1-210ENST00000494103 1298 ntTSL 3 BASIC18.63■□□□□ 0.57
CBX4O00257 PP7080-204ENST00000510714 601 ntTSL 3 BASIC18.63■□□□□ 0.57
CBX4O00257 MRPL52-215ENST00000556840 398 ntTSL 2 BASIC18.63■□□□□ 0.57
CBX4O00257 AC099518.3-201ENST00000564808 809 ntAPPRIS P5 TSL 4 BASIC18.63■□□□□ 0.57
CBX4O00257 AC009084.1-201ENST00000566869 317 ntTSL 5 BASIC18.63■□□□□ 0.57
CBX4O00257 LIMD2-211ENST00000583211 1298 ntTSL 3 BASIC18.63■□□□□ 0.57
CBX4O00257 LINC01785-201ENST00000598042 1112 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
CBX4O00257 VPS72-207ENST00000640458 689 ntTSL 5 BASIC18.63■□□□□ 0.57
CBX4O00257 TUBA4A-201ENST00000248437 2162 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
CBX4O00257 RFXANK-205ENST00000456252 1325 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
CBX4O00257 CLEC4G-201ENST00000328853 1360 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
CBX4O00257 AKR1A1-214ENST00000621846 1360 ntAPPRIS P1 TSL 5 BASIC18.63■□□□□ 0.57
CBX4O00257 RTN4-201ENST00000317610 2333 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
CBX4O00257 GTPBP3-222ENST00000600625 2493 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
CBX4O00257 CIAO1-203ENST00000488633 1533 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
CBX4O00257 SIGIRR-202ENST00000397632 1598 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
CBX4O00257 LINC01126-201ENST00000623515 1646 ntBASIC18.63■□□□□ 0.57
CBX4O00257 EXO5-202ENST00000358527 1892 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
CBX4O00257 THOP1-205ENST00000586677 1872 ntTSL 2 BASIC18.63■□□□□ 0.57
CBX4O00257 ZNF692-204ENST00000451251 2065 ntAPPRIS ALT2 TSL 2 BASIC18.62■□□□□ 0.57
CBX4O00257 ALKBH4-201ENST00000292566 2105 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CBX4O00257 STARD3-201ENST00000336308 2132 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CBX4O00257 IAH1-202ENST00000470914 2137 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
CBX4O00257 PCDHB2-202ENST00000622947 2231 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
CBX4O00257 RTEL1-204ENST00000370003 2273 ntTSL 2 BASIC18.62■□□□□ 0.57
CBX4O00257 TBL1Y-203ENST00000383032 2407 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CBX4O00257 DENND2A-201ENST00000275884 3735 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CBX4O00257 VCX3B-203ENST00000444481 812 ntAPPRIS ALT2 TSL 5 BASIC18.62■□□□□ 0.57
CBX4O00257 CSRP1-214ENST00000531916 890 ntTSL 5 BASIC18.62■□□□□ 0.57
CBX4O00257 ISCU-208ENST00000539593 1071 ntTSL 2 BASIC18.62■□□□□ 0.57
CBX4O00257 AC079031.1-201ENST00000542627 1035 ntTSL 3 BASIC18.62■□□□□ 0.57
CBX4O00257 H3F3B-206ENST00000587560 551 ntAPPRIS P1 TSL 2 BASIC18.62■□□□□ 0.57
CBX4O00257 BIRC5-207ENST00000590449 568 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
CBX4O00257 VCX3A-203ENST00000612369 812 ntAPPRIS ALT2 TSL 5 BASIC18.62■□□□□ 0.57
CBX4O00257 CALM2-209ENST00000628793 1103 ntTSL 5 BASIC18.62■□□□□ 0.57
CBX4O00257 UBC-206ENST00000538617 1303 ntTSL 5 BASIC18.62■□□□□ 0.57
CBX4O00257 WNT9B-201ENST00000290015 1376 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CBX4O00257 PTPRN2-204ENST00000404321 1374 ntTSL 5 BASIC18.62■□□□□ 0.57
CBX4O00257 CD209-210ENST00000601951 1439 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
CBX4O00257 TRIM13-206ENST00000457662 1489 ntAPPRIS P3 TSL 1 (best) BASIC18.62■□□□□ 0.57
CBX4O00257 WNT8A-204ENST00000506684 1543 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
CBX4O00257 ENOPH1-202ENST00000505846 1689 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
CBX4O00257 MCOLN2-201ENST00000284027 1729 ntAPPRIS P1 TSL 5 BASIC18.62■□□□□ 0.57
CBX4O00257 RGS3-202ENST00000342620 1714 ntTSL 5 BASIC18.62■□□□□ 0.57
CBX4O00257 SLC1A6-210ENST00000600144 1735 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
CBX4O00257 RPRD1A-201ENST00000357384 1850 ntAPPRIS P1 TSL 5 BASIC18.62■□□□□ 0.57
CBX4O00257 HMGA1-201ENST00000311487 1920 ntAPPRIS P4 TSL 1 (best) BASIC18.62■□□□□ 0.57
CBX4O00257 DHRS12-201ENST00000218981 1970 ntTSL 2 BASIC18.62■□□□□ 0.57
CBX4O00257 COPS7A-204ENST00000534947 2034 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CBX4O00257 SALRNA1-201ENST00000555871 2086 ntTSL 4 BASIC18.62■□□□□ 0.57
CBX4O00257 DMRT3-201ENST00000190165 2183 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CBX4O00257 NUMBL-207ENST00000598779 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
CBX4O00257 KRT6C-201ENST00000252250 2289 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CBX4O00257 KRT6B-201ENST00000252252 2282 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CBX4O00257 PALM3-201ENST00000340790 2262 ntAPPRIS P2 TSL 5 BASIC18.62■□□□□ 0.57
CBX4O00257 KCNQ2-218ENST00000629676 2399 ntTSL 5 BASIC18.62■□□□□ 0.57
CBX4O00257 HTR7P1-202ENST00000624664 4411 ntBASIC18.62■□□□□ 0.57
CBX4O00257 SLC22A23-203ENST00000406686 5658 ntAPPRIS P2 TSL 5 BASIC18.62■□□□□ 0.57
CBX4O00257 UBE2I-203ENST00000397514 2976 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CBX4O00257 SASH1-201ENST00000367467 7711 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CBX4O00257 TMEM109-201ENST00000227525 2413 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CBX4O00257 PTTG1IP-203ENST00000397887 2413 ntTSL 4 BASIC18.61■□□□□ 0.57
CBX4O00257 FBXL20-202ENST00000394294 2309 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
CBX4O00257 TULP1-201ENST00000229771 2162 ntAPPRIS P2 TSL 1 (best) BASIC18.61■□□□□ 0.57
CBX4O00257 ESPNP-201ENST00000270691 2015 ntBASIC18.61■□□□□ 0.57
CBX4O00257 ACVR1B-203ENST00000426655 1782 ntTSL 2 BASIC18.61■□□□□ 0.57
CBX4O00257 COQ9-210ENST00000567072 1482 ntTSL 3 BASIC18.61■□□□□ 0.57
CBX4O00257 KRT89P-201ENST00000620027 1478 ntBASIC18.61■□□□□ 0.57
CBX4O00257 AMACR-205ENST00000426255 1316 ntTSL 2 BASIC18.61■□□□□ 0.57
CBX4O00257 IGHGP-201ENST00000390555 1178 ntBASIC18.61■□□□□ 0.57
CBX4O00257 PLAC8-202ENST00000411416 786 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CBX4O00257 BX276092.5-203ENST00000456199 560 ntBASIC18.61■□□□□ 0.57
CBX4O00257 FNDC5-205ENST00000496770 837 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
CBX4O00257 NAPSB-203ENST00000531692 561 ntTSL 2 BASIC18.61■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 58 ms