Protein–RNA interactions for Protein: Q9UHB6

LIMA1, LIM domain and actin-binding protein 1, humanhuman

Known RBP Predictions only

Length 759 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1Q9UHB6 APP-202ENST00000348990 3355 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
LIMA1Q9UHB6 FSTL1-201ENST00000295633 5943 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
LIMA1Q9UHB6 BAG5-201ENST00000299204 4848 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
LIMA1Q9UHB6 SLC35F3-201ENST00000366617 2762 ntAPPRIS ALT1 TSL 1 (best) BASIC19.98■□□□□ 0.79
LIMA1Q9UHB6 TMIGD2-201ENST00000301272 1262 ntAPPRIS P3 TSL 1 (best) BASIC19.98■□□□□ 0.79
LIMA1Q9UHB6 IL15RA-208ENST00000397251 1046 ntAPPRIS ALT2 TSL 1 (best) BASIC19.98■□□□□ 0.79
LIMA1Q9UHB6 TTC3-203ENST00000399010 2115 ntTSL 5 BASIC19.98■□□□□ 0.79
LIMA1Q9UHB6 TSPY17P-201ENST00000450329 467 ntBASIC19.98■□□□□ 0.79
LIMA1Q9UHB6 OBSL1-201ENST00000289656 2274 ntTSL 5 BASIC19.98■□□□□ 0.79
LIMA1Q9UHB6 TMEM110-MUSTN1-202ENST00000504329 1405 ntAPPRIS P1 TSL 5 BASIC19.98■□□□□ 0.79
LIMA1Q9UHB6 CBS-201ENST00000352178 2583 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
LIMA1Q9UHB6 FCER2-201ENST00000346664 1596 ntAPPRIS P2 TSL 1 (best) BASIC19.98■□□□□ 0.79
LIMA1Q9UHB6 FCER2-205ENST00000597921 1560 ntAPPRIS P2 TSL 1 (best) BASIC19.98■□□□□ 0.79
LIMA1Q9UHB6 HLA-DQB1-204ENST00000399084 1734 ntAPPRIS P1 BASIC19.98■□□□□ 0.79
LIMA1Q9UHB6 RGS3-211ENST00000462403 2155 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
LIMA1Q9UHB6 OGFOD2-205ENST00000454694 1488 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
LIMA1Q9UHB6 SSX2IP-210ENST00000605755 1933 ntTSL 2 BASIC19.98■□□□□ 0.79
LIMA1Q9UHB6 SUPT20H-202ENST00000356185 2681 ntAPPRIS P3 TSL 1 (best) BASIC19.98■□□□□ 0.79
LIMA1Q9UHB6 LRCH3-201ENST00000334859 2258 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
LIMA1Q9UHB6 CHAC1-202ENST00000446533 1849 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
LIMA1Q9UHB6 TIMM8A-201ENST00000372902 1664 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
LIMA1Q9UHB6 SLC12A4-201ENST00000316341 4765 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
LIMA1Q9UHB6 CTSB-202ENST00000353047 3875 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
LIMA1Q9UHB6 PRDM8-203ENST00000504452 3706 ntAPPRIS P1 TSL 5 BASIC19.97■□□□□ 0.79
LIMA1Q9UHB6 ARNT-202ENST00000358595 4887 ntAPPRIS P3 TSL 1 (best) BASIC19.97■□□□□ 0.79
LIMA1Q9UHB6 PHC1-212ENST00000543824 4292 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
LIMA1Q9UHB6 ARHGEF19-201ENST00000270747 3029 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
LIMA1Q9UHB6 KRT17P2-202ENST00000326333 1174 ntTSL 2 BASIC19.97■□□□□ 0.79
LIMA1Q9UHB6 FAM26F-202ENST00000368605 1117 ntAPPRIS P1 TSL 5 BASIC19.97■□□□□ 0.79
LIMA1Q9UHB6 GLYCTK-205ENST00000473032 935 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
LIMA1Q9UHB6 AC104390.1-201ENST00000555663 520 ntBASIC19.97■□□□□ 0.79
LIMA1Q9UHB6 MIR3180-4-201ENST00000582223 153 ntBASIC19.97■□□□□ 0.79
LIMA1Q9UHB6 BX649632.1-201ENST00000610187 819 ntTSL 3 BASIC19.97■□□□□ 0.79
LIMA1Q9UHB6 PODN-203ENST00000395871 2744 ntTSL 5 BASIC19.97■□□□□ 0.79
LIMA1Q9UHB6 ARSA-204ENST00000395621 1918 ntAPPRIS P1 TSL 2 BASIC19.97■□□□□ 0.79
LIMA1Q9UHB6 SIRPAP1-201ENST00000448467 1770 ntBASIC19.97■□□□□ 0.79
LIMA1Q9UHB6 NOMO2-201ENST00000330537 4352 ntAPPRIS ALT2 TSL 5 BASIC19.97■□□□□ 0.79
LIMA1Q9UHB6 JMJD6-202ENST00000397625 1603 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
LIMA1Q9UHB6 DMRTA2-201ENST00000404795 3137 ntAPPRIS P1 TSL 5 BASIC19.97■□□□□ 0.79
LIMA1Q9UHB6 GRAP2-202ENST00000407075 1304 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
LIMA1Q9UHB6 CFAP46-201ENST00000368585 1825 ntAPPRIS ALT2 TSL 2 BASIC19.97■□□□□ 0.79
LIMA1Q9UHB6 SMOC1-201ENST00000361956 2040 ntAPPRIS ALT1 TSL 1 (best) BASIC19.97■□□□□ 0.79
LIMA1Q9UHB6 AGER-205ENST00000375069 1538 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
LIMA1Q9UHB6 MID1IP1-202ENST00000378474 1889 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
LIMA1Q9UHB6 MSANTD1-201ENST00000438480 2922 ntAPPRIS P3 TSL 5 BASIC19.96■□□□□ 0.79
LIMA1Q9UHB6 DNM1P34-201ENST00000567292 2276 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
LIMA1Q9UHB6 CHRD-202ENST00000348986 3155 ntAPPRIS ALT2 TSL 5 BASIC19.96■□□□□ 0.79
LIMA1Q9UHB6 AC092338.2-201ENST00000568827 1415 ntBASIC19.96■□□□□ 0.79
LIMA1Q9UHB6 ZCCHC23-201ENST00000500526 1951 ntTSL 2 BASIC19.96■□□□□ 0.79
LIMA1Q9UHB6 CTSB-232ENST00000534510 1989 ntAPPRIS P1 TSL 5 BASIC19.96■□□□□ 0.79
LIMA1Q9UHB6 ST8SIA5-201ENST00000315087 2716 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
LIMA1Q9UHB6 TCEA1-201ENST00000396401 2718 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
LIMA1Q9UHB6 WNT1-201ENST00000293549 1185 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
LIMA1Q9UHB6 HBA1-201ENST00000320868 577 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
LIMA1Q9UHB6 TNNT3-206ENST00000381579 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC19.96■□□□□ 0.79
LIMA1Q9UHB6 KIRREL3-AS3-201ENST00000404882 831 ntBASIC19.96■□□□□ 0.79
LIMA1Q9UHB6 RNF144A-AS1-204ENST00000437589 618 ntTSL 2 BASIC19.96■□□□□ 0.79
LIMA1Q9UHB6 AL158047.1-201ENST00000445918 881 ntBASIC19.96■□□□□ 0.79
LIMA1Q9UHB6 AC013402.1-201ENST00000456999 561 ntTSL 4 BASIC19.96■□□□□ 0.79
LIMA1Q9UHB6 AP006621.4-201ENST00000527021 532 ntTSL 5 BASIC19.96■□□□□ 0.79
LIMA1Q9UHB6 AL049780.2-201ENST00000556236 367 ntTSL 3 BASIC19.96■□□□□ 0.79
LIMA1Q9UHB6 AC004448.5-201ENST00000579897 567 ntTSL 5 BASIC19.96■□□□□ 0.79
LIMA1Q9UHB6 ARHGDIA-207ENST00000580685 1201 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
LIMA1Q9UHB6 GOLGA2P10-205ENST00000618267 983 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
LIMA1Q9UHB6 PRR29-AS1-202ENST00000580942 2926 ntTSL 2 BASIC19.96■□□□□ 0.79
LIMA1Q9UHB6 HOXB1-201ENST00000239174 2020 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
LIMA1Q9UHB6 RASSF7-205ENST00000454668 1450 ntAPPRIS ALT2 TSL 1 (best) BASIC19.96■□□□□ 0.79
LIMA1Q9UHB6 FGFR3-205ENST00000440486 4287 ntAPPRIS P3 TSL 5 BASIC19.96■□□□□ 0.79
LIMA1Q9UHB6 SMARCD3-202ENST00000356800 1669 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
LIMA1Q9UHB6 TSKS-201ENST00000246801 1883 ntAPPRIS P2 TSL 1 (best) BASIC19.96■□□□□ 0.79
LIMA1Q9UHB6 FIBCD1-201ENST00000372337 1868 ntTSL 5 BASIC19.96■□□□□ 0.79
LIMA1Q9UHB6 BFSP1-201ENST00000377868 2063 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
LIMA1Q9UHB6 CXXC1-202ENST00000412036 2280 ntAPPRIS ALT1 TSL 1 (best) BASIC19.96■□□□□ 0.79
LIMA1Q9UHB6 ZSWIM4-201ENST00000254323 4339 ntAPPRIS P1 TSL 2 BASIC19.95■□□□□ 0.78
LIMA1Q9UHB6 ZNF140-207ENST00000440550 1663 ntTSL 2 BASIC19.95■□□□□ 0.78
LIMA1Q9UHB6 LUC7L-201ENST00000293872 1456 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
LIMA1Q9UHB6 HPCA-201ENST00000373467 1468 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
LIMA1Q9UHB6 TMEM160-201ENST00000253047 663 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
LIMA1Q9UHB6 MSGN1-201ENST00000281047 606 ntAPPRIS P1 BASIC19.95■□□□□ 0.78
LIMA1Q9UHB6 SHBG-203ENST00000416273 1042 ntAPPRIS ALT2 TSL 3 BASIC19.95■□□□□ 0.78
LIMA1Q9UHB6 AC008825.1-201ENST00000504398 452 ntTSL 3 BASIC19.95■□□□□ 0.78
LIMA1Q9UHB6 AP003071.4-201ENST00000562276 1284 ntBASIC19.95■□□□□ 0.78
LIMA1Q9UHB6 SHBG-215ENST00000575903 1196 ntTSL 3 BASIC19.95■□□□□ 0.78
LIMA1Q9UHB6 AP005263.1-201ENST00000579126 914 ntTSL 2 BASIC19.95■□□□□ 0.78
LIMA1Q9UHB6 RGMB-AS1-201ENST00000498871 1903 ntTSL 2 BASIC19.95■□□□□ 0.78
LIMA1Q9UHB6 AGO3-202ENST00000324350 1726 ntTSL 2 BASIC19.95■□□□□ 0.78
LIMA1Q9UHB6 NDUFS7-210ENST00000539480 1743 ntTSL 2 BASIC19.95■□□□□ 0.78
LIMA1Q9UHB6 SLC27A2-202ENST00000380902 2181 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
LIMA1Q9UHB6 ASL-204ENST00000395331 1538 ntTSL 5 BASIC19.95■□□□□ 0.78
LIMA1Q9UHB6 INPP4A-205ENST00000409851 3365 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
LIMA1Q9UHB6 SLC1A5-205ENST00000594991 2031 ntTSL 2 BASIC19.95■□□□□ 0.78
LIMA1Q9UHB6 SOGA3-203ENST00000525778 4077 ntAPPRIS P1 TSL 5 BASIC19.95■□□□□ 0.78
LIMA1Q9UHB6 AC139713.2-201ENST00000641328 2723 ntBASIC19.95■□□□□ 0.78
LIMA1Q9UHB6 APIP-201ENST00000395787 1366 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
LIMA1Q9UHB6 CDH22-203ENST00000537909 3902 ntAPPRIS P1 TSL 2 BASIC19.95■□□□□ 0.78
LIMA1Q9UHB6 GRIN3B-201ENST00000234389 3281 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
LIMA1Q9UHB6 PP7080-201ENST00000342584 1876 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
LIMA1Q9UHB6 ERMARD-210ENST00000588451 2146 ntTSL 5 BASIC19.94■□□□□ 0.78
LIMA1Q9UHB6 RNF2-201ENST00000367509 1677 ntTSL 2 BASIC19.94■□□□□ 0.78
LIMA1Q9UHB6 ARFRP1-207ENST00000612157 1698 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
Retrieved 100 of 98,524 protein–RNA pairs in 34.2 ms