Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 CDKN1B-201ENST00000228872 2657 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
NKX3-1Q99801 WIZ-201ENST00000263381 5695 ntAPPRIS P2 TSL 2 BASIC15.98■□□□□ 0.15
NKX3-1Q99801 SNED1-204ENST00000401884 4538 ntAPPRIS ALT2 TSL 5 BASIC15.98■□□□□ 0.15
NKX3-1Q99801 FERMT2-204ENST00000399304 2082 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
NKX3-1Q99801 AHRR-209ENST00000512529 1912 ntTSL 5 BASIC15.98■□□□□ 0.15
NKX3-1Q99801 RASSF1-201ENST00000327761 1757 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
NKX3-1Q99801 AC010186.2-201ENST00000575094 2612 ntTSL 2 BASIC15.98■□□□□ 0.15
NKX3-1Q99801 FAM50B-201ENST00000380272 1628 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
NKX3-1Q99801 EEF1AKMT2-201ENST00000368836 1462 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
NKX3-1Q99801 KRT13-208ENST00000587544 1456 ntAPPRIS ALT2 TSL 1 (best) BASIC15.97■□□□□ 0.15
NKX3-1Q99801 BPIFB4-201ENST00000375483 2159 ntAPPRIS P1 TSL 5 BASIC15.97■□□□□ 0.15
NKX3-1Q99801 VPS51-201ENST00000279281 2714 ntAPPRIS P2 TSL 1 (best) BASIC15.97■□□□□ 0.15
NKX3-1Q99801 P2RX3-204ENST00000616487 1346 ntTSL 5 BASIC15.97■□□□□ 0.15
NKX3-1Q99801 MME-217ENST00000616757 1315 ntTSL 5 BASIC15.97■□□□□ 0.15
NKX3-1Q99801 TMEM191C-214ENST00000621561 1337 ntAPPRIS P2 TSL 5 BASIC15.97■□□□□ 0.15
NKX3-1Q99801 AC080080.1-201ENST00000625121 2420 ntBASIC15.97■□□□□ 0.15
NKX3-1Q99801 RORA-204ENST00000449337 1701 ntAPPRIS ALT2 TSL 1 (best) BASIC15.97■□□□□ 0.15
NKX3-1Q99801 ELN-202ENST00000320399 2274 ntAPPRIS ALT2 TSL 5 BASIC15.97■□□□□ 0.15
NKX3-1Q99801 VPS26B-202ENST00000525095 1558 ntAPPRIS P1 TSL 5 BASIC15.97■□□□□ 0.15
NKX3-1Q99801 NUBP2-201ENST00000262302 1413 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
NKX3-1Q99801 AC112777.1-201ENST00000540175 1423 ntBASIC15.97■□□□□ 0.15
NKX3-1Q99801 ING5-201ENST00000313552 5196 ntAPPRIS P3 TSL 1 (best) BASIC15.97■□□□□ 0.15
NKX3-1Q99801 NDUFB10-201ENST00000268668 705 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
NKX3-1Q99801 CLDND2-201ENST00000291715 974 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
NKX3-1Q99801 MCAT-202ENST00000327555 1134 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
NKX3-1Q99801 PSMG1-202ENST00000380900 907 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
NKX3-1Q99801 RTBDN-202ENST00000393233 1000 ntAPPRIS ALT2 TSL 3 BASIC15.97■□□□□ 0.15
NKX3-1Q99801 POLR2J-202ENST00000393794 784 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
NKX3-1Q99801 NDUFB2-203ENST00000461457 559 ntTSL 3 BASIC15.97■□□□□ 0.15
NKX3-1Q99801 GLRB-205ENST00000512619 728 ntTSL 3 BASIC15.97■□□□□ 0.15
NKX3-1Q99801 EIF3J-AS1-205ENST00000560750 1093 ntTSL 3 BASIC15.97■□□□□ 0.15
NKX3-1Q99801 AC009090.2-201ENST00000565829 472 ntTSL 3 BASIC15.97■□□□□ 0.15
NKX3-1Q99801 AC004771.5-201ENST00000575985 542 ntTSL 4 BASIC15.97■□□□□ 0.15
NKX3-1Q99801 USP36-216ENST00000589424 970 ntTSL 5 BASIC15.97■□□□□ 0.15
NKX3-1Q99801 AC011446.2-202ENST00000592882 756 ntTSL 3 BASIC15.97■□□□□ 0.15
NKX3-1Q99801 SETMAR-206ENST00000430981 1671 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
NKX3-1Q99801 CCM2-207ENST00000475551 2471 ntAPPRIS ALT2 TSL 2 BASIC15.97■□□□□ 0.15
NKX3-1Q99801 SEPHS1-201ENST00000327347 3273 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
NKX3-1Q99801 NINL-201ENST00000278886 4969 ntAPPRIS P3 TSL 1 (best) BASIC15.97■□□□□ 0.15
NKX3-1Q99801 CCK-202ENST00000396169 1527 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
NKX3-1Q99801 LBX1-AS1-201ENST00000430651 2553 ntTSL 2 BASIC15.97■□□□□ 0.15
NKX3-1Q99801 TACC1-202ENST00000317827 7802 ntAPPRIS P3 TSL 1 (best) BASIC15.97■□□□□ 0.15
NKX3-1Q99801 ACADS-202ENST00000411593 1398 ntTSL 2 BASIC15.97■□□□□ 0.15
NKX3-1Q99801 FAM111A-204ENST00000528737 6189 ntAPPRIS P1 TSL 2 BASIC15.97■□□□□ 0.15
NKX3-1Q99801 TBC1D3P2-202ENST00000577902 1649 ntBASIC15.97■□□□□ 0.15
NKX3-1Q99801 TPRA1-204ENST00000450633 1865 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
NKX3-1Q99801 NOX4-201ENST00000263317 2388 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
NKX3-1Q99801 NXNL2-202ENST00000375855 1457 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
NKX3-1Q99801 HAUS4-217ENST00000555367 1454 ntTSL 5 BASIC15.97■□□□□ 0.15
NKX3-1Q99801 COQ9-210ENST00000567072 1482 ntTSL 3 BASIC15.97■□□□□ 0.15
NKX3-1Q99801 AC087500.1-202ENST00000571689 1715 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
NKX3-1Q99801 PPP1R7-202ENST00000272983 1954 ntTSL 2 BASIC15.96■□□□□ 0.15
NKX3-1Q99801 KANSL1L-201ENST00000281772 4754 ntAPPRIS P1 TSL 5 BASIC15.96■□□□□ 0.15
NKX3-1Q99801 MYLKP1-201ENST00000509077 1580 ntBASIC15.96■□□□□ 0.15
NKX3-1Q99801 NPAS3-202ENST00000356141 2802 ntAPPRIS ALT2 TSL 1 (best) BASIC15.96■□□□□ 0.15
NKX3-1Q99801 STXBP2-203ENST00000441779 1914 ntTSL 2 BASIC15.96■□□□□ 0.15
NKX3-1Q99801 STX17-205ENST00000525640 2523 ntAPPRIS P1 TSL 2 BASIC15.96■□□□□ 0.15
NKX3-1Q99801 AC012317.2-201ENST00000623305 2251 ntBASIC15.96■□□□□ 0.15
NKX3-1Q99801 TMEM104-202ENST00000417024 1781 ntTSL 2 BASIC15.96■□□□□ 0.15
NKX3-1Q99801 CEP78-204ENST00000415759 2623 ntAPPRIS ALT2 TSL 5 BASIC15.96■□□□□ 0.15
NKX3-1Q99801 HLA-DRB1-201ENST00000360004 1229 ntAPPRIS P1 BASIC15.96■□□□□ 0.15
NKX3-1Q99801 AC004951.3-201ENST00000418645 1148 ntBASIC15.96■□□□□ 0.15
NKX3-1Q99801 PPP1R14BP5-201ENST00000440334 435 ntBASIC15.96■□□□□ 0.15
NKX3-1Q99801 SBF2-AS1-202ENST00000499953 854 ntTSL 5 BASIC15.96■□□□□ 0.15
NKX3-1Q99801 AMN1-211ENST00000541931 880 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
NKX3-1Q99801 ZNF599-203ENST00000588760 948 ntTSL 2 BASIC15.96■□□□□ 0.15
NKX3-1Q99801 AC010531.6-201ENST00000602282 401 ntTSL 2 BASIC15.96■□□□□ 0.15
NKX3-1Q99801 AL024498.1-202ENST00000606652 480 ntTSL 2 BASIC15.96■□□□□ 0.15
NKX3-1Q99801 AC008622.2-201ENST00000617006 1229 ntBASIC15.96■□□□□ 0.15
NKX3-1Q99801 NYX-201ENST00000342595 2713 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
NKX3-1Q99801 TRAPPC2L-201ENST00000301021 2215 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
NKX3-1Q99801 CD151-213ENST00000528011 1369 ntAPPRIS ALT1 TSL 5 BASIC15.96■□□□□ 0.15
NKX3-1Q99801 LRRC20-203ENST00000358141 2924 ntTSL 2 BASIC15.96■□□□□ 0.15
NKX3-1Q99801 MAP4K2-202ENST00000377350 2931 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
NKX3-1Q99801 SHANK1-201ENST00000293441 6643 ntAPPRIS P2 TSL 1 (best) BASIC15.96■□□□□ 0.15
NKX3-1Q99801 PROSER1-201ENST00000352251 5168 ntAPPRIS P2 TSL 1 (best) BASIC15.96■□□□□ 0.15
NKX3-1Q99801 TCIRG1-201ENST00000265686 2677 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
NKX3-1Q99801 ENTPD2-202ENST00000355097 2095 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
NKX3-1Q99801 DNAH17-AS1-202ENST00000591373 1453 ntTSL 5 BASIC15.96■□□□□ 0.14
NKX3-1Q99801 SCARB2-201ENST00000264896 4792 ntAPPRIS P2 TSL 1 (best) BASIC15.96■□□□□ 0.14
NKX3-1Q99801 GPR42-201ENST00000454971 1804 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.14
NKX3-1Q99801 EDC3-214ENST00000568176 1825 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.14
NKX3-1Q99801 ECE2-205ENST00000404464 3229 ntTSL 1 (best) BASIC15.96■□□□□ 0.14
NKX3-1Q99801 TBC1D4-202ENST00000377636 6364 ntAPPRIS P3 TSL 2 BASIC15.96■□□□□ 0.14
NKX3-1Q99801 ADAM15-207ENST00000368413 1901 ntTSL 5 BASIC15.96■□□□□ 0.14
NKX3-1Q99801 MFSD10-205ENST00000507555 1573 ntTSL 5 BASIC15.96■□□□□ 0.14
NKX3-1Q99801 GTF2IRD2-207ENST00000625377 1910 ntTSL 5 BASIC15.96■□□□□ 0.14
NKX3-1Q99801 AC090206.1-201ENST00000615734 1678 ntTSL 5 BASIC15.95■□□□□ 0.14
NKX3-1Q99801 LSR-212ENST00000602122 2480 ntAPPRIS ALT2 TSL 2 BASIC15.95■□□□□ 0.14
NKX3-1Q99801 UNC13A-206ENST00000552293 5314 ntAPPRIS ALT2 TSL 5 BASIC15.95■□□□□ 0.14
NKX3-1Q99801 TRAK2-202ENST00000430254 1436 ntTSL 2 BASIC15.95■□□□□ 0.14
NKX3-1Q99801 CYP2W1-201ENST00000308919 2304 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
NKX3-1Q99801 CXADR-201ENST00000284878 6254 ntAPPRIS P3 TSL 1 (best) BASIC15.95■□□□□ 0.14
NKX3-1Q99801 CD19-202ENST00000538922 1957 ntAPPRIS ALT2 TSL 5 BASIC15.95■□□□□ 0.14
NKX3-1Q99801 TM2D2-201ENST00000397070 1631 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
NKX3-1Q99801 SNX11-203ENST00000452859 1601 ntTSL 2 BASIC15.95■□□□□ 0.14
NKX3-1Q99801 FAM208A-209ENST00000493960 5600 ntAPPRIS P2 TSL 5 BASIC15.95■□□□□ 0.14
NKX3-1Q99801 GXYLT2-201ENST00000389617 3260 ntAPPRIS P1 TSL 5 BASIC15.95■□□□□ 0.14
NKX3-1Q99801 ATP5D-201ENST00000215375 997 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
NKX3-1Q99801 PIN1-201ENST00000247970 997 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
Retrieved 100 of 98,524 protein–RNA pairs in 44.2 ms