Protein–RNA interactions for Protein: Q99727

TIMP4, Metalloproteinase inhibitor 4, humanhuman

Predictions only

Length 224 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TIMP4Q99727 RNF113B-201ENST00000267291 1376 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
TIMP4Q99727 BSCL2-201ENST00000278893 1364 ntAPPRIS ALT2 TSL 2 BASIC16.77■□□□□ 0.28
TIMP4Q99727 EMD-202ENST00000369842 1379 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
TIMP4Q99727 AC118553.2-202ENST00000638792 2729 ntAPPRIS ALT2 TSL 5 BASIC16.77■□□□□ 0.28
TIMP4Q99727 UBQLN4-201ENST00000368309 3576 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
TIMP4Q99727 NES-201ENST00000368223 5558 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
TIMP4Q99727 P2RY6-201ENST00000349767 1700 ntAPPRIS P1 TSL 2 BASIC16.77■□□□□ 0.28
TIMP4Q99727 TOX2-205ENST00000423191 1709 ntTSL 2 BASIC16.77■□□□□ 0.28
TIMP4Q99727 GPR32-201ENST00000270590 1269 ntAPPRIS P1 BASIC16.77■□□□□ 0.28
TIMP4Q99727 FAM86B2-202ENST00000309608 806 ntTSL 3 BASIC16.77■□□□□ 0.28
TIMP4Q99727 BET1L-202ENST00000332865 533 ntTSL 5 BASIC16.77■□□□□ 0.28
TIMP4Q99727 TBC1D7-201ENST00000343141 1027 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
TIMP4Q99727 HBZP1-201ENST00000354915 429 ntBASIC16.77■□□□□ 0.28
TIMP4Q99727 CLN3-202ENST00000355477 1173 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
TIMP4Q99727 SYCE1L-201ENST00000378644 858 ntAPPRIS P2 TSL 5 BASIC16.77■□□□□ 0.28
TIMP4Q99727 KRT18P23-201ENST00000435622 1283 ntBASIC16.77■□□□□ 0.28
TIMP4Q99727 NT5C2-211ENST00000470299 249 ntTSL 5 BASIC16.77■□□□□ 0.28
TIMP4Q99727 PTK2-216ENST00000519881 863 ntTSL 3 BASIC16.77■□□□□ 0.28
TIMP4Q99727 AF186192.2-201ENST00000524514 423 ntTSL 3 BASIC16.77■□□□□ 0.28
TIMP4Q99727 AC116407.4-201ENST00000623319 1061 ntBASIC16.77■□□□□ 0.28
TIMP4Q99727 AC026362.1-201ENST00000540866 5618 ntTSL 2 BASIC16.77■□□□□ 0.27
TIMP4Q99727 CTNNBL1-204ENST00000405275 2076 ntTSL 5 BASIC16.77■□□□□ 0.27
TIMP4Q99727 ZNF394-201ENST00000337673 2179 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
TIMP4Q99727 AL499627.1-201ENST00000569373 2188 ntBASIC16.77■□□□□ 0.27
TIMP4Q99727 AL162741.1-201ENST00000565563 1558 ntBASIC16.77■□□□□ 0.27
TIMP4Q99727 FBXL3-201ENST00000355619 3503 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
TIMP4Q99727 B3GNT9-201ENST00000449549 2917 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
TIMP4Q99727 HPS3-202ENST00000460120 2745 ntTSL 2 BASIC16.76■□□□□ 0.27
TIMP4Q99727 MCCC1-201ENST00000265594 2545 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
TIMP4Q99727 RETREG2-203ENST00000430297 4618 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
TIMP4Q99727 AP2M1-201ENST00000292807 1931 ntAPPRIS P4 TSL 5 BASIC16.76■□□□□ 0.27
TIMP4Q99727 GNA12-201ENST00000275364 4378 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
TIMP4Q99727 FAM182B-201ENST00000376403 1681 ntAPPRIS P5 TSL 1 (best) BASIC16.76■□□□□ 0.27
TIMP4Q99727 ZNF74-201ENST00000357502 2788 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
TIMP4Q99727 MAPKAPK3-208ENST00000621469 2563 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
TIMP4Q99727 HSPA4-205ENST00000617074 2358 ntTSL 5 BASIC16.76■□□□□ 0.27
TIMP4Q99727 EXOSC3-201ENST00000327304 1806 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
TIMP4Q99727 BCL2L10-201ENST00000260442 1249 ntAPPRIS P3 TSL 1 (best) BASIC16.76■□□□□ 0.27
TIMP4Q99727 FAM187B-201ENST00000324675 1184 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
TIMP4Q99727 NDUFA1-201ENST00000371437 766 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
TIMP4Q99727 ELP6-205ENST00000439305 880 ntTSL 2 BASIC16.76■□□□□ 0.27
TIMP4Q99727 LBX1-AS1-203ENST00000454527 740 ntTSL 5 BASIC16.76■□□□□ 0.27
TIMP4Q99727 C7orf49-209ENST00000483029 596 ntTSL 2 BASIC16.76■□□□□ 0.27
TIMP4Q99727 AC092597.1-201ENST00000487352 616 ntBASIC16.76■□□□□ 0.27
TIMP4Q99727 HELT-202ENST00000505610 846 ntAPPRIS ALT1 TSL 1 (best) BASIC16.76■□□□□ 0.27
TIMP4Q99727 AP003396.3-201ENST00000530918 778 ntTSL 5 BASIC16.76■□□□□ 0.27
TIMP4Q99727 AC027682.5-201ENST00000567122 530 ntTSL 3 BASIC16.76■□□□□ 0.27
TIMP4Q99727 AC068587.9-201ENST00000641814 219 ntBASIC16.76■□□□□ 0.27
TIMP4Q99727 ANKRD18DP-201ENST00000335478 2171 ntTSL 2 BASIC16.76■□□□□ 0.27
TIMP4Q99727 TFEB-206ENST00000403298 2162 ntAPPRIS P1 TSL 5 BASIC16.76■□□□□ 0.27
TIMP4Q99727 EP300-201ENST00000263253 9587 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
TIMP4Q99727 GPC2-201ENST00000292377 2532 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
TIMP4Q99727 CIZ1-226ENST00000629610 2855 ntAPPRIS ALT2 TSL 2 BASIC16.76■□□□□ 0.27
TIMP4Q99727 C19orf25-201ENST00000427685 1410 ntTSL 2 BASIC16.76■□□□□ 0.27
TIMP4Q99727 ACY1-206ENST00000476351 1409 ntTSL 3 BASIC16.76■□□□□ 0.27
TIMP4Q99727 HOXB1-202ENST00000577092 1414 ntBASIC16.76■□□□□ 0.27
TIMP4Q99727 SLC35A3-205ENST00000465289 5696 ntAPPRIS P1 TSL 5 BASIC16.76■□□□□ 0.27
TIMP4Q99727 ARPIN-202ENST00000460685 2145 ntTSL 2 BASIC16.76■□□□□ 0.27
TIMP4Q99727 IDUA-210ENST00000514224 2130 ntTSL 2 BASIC16.76■□□□□ 0.27
TIMP4Q99727 GSDMD-206ENST00000526406 2496 ntAPPRIS P2 TSL 2 BASIC16.76■□□□□ 0.27
TIMP4Q99727 PKP3-201ENST00000331563 2809 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
TIMP4Q99727 CTNNBL1-201ENST00000361383 1925 ntAPPRIS P2 TSL 1 (best) BASIC16.76■□□□□ 0.27
TIMP4Q99727 CCDC43-201ENST00000315286 2082 ntAPPRIS P2 TSL 1 (best) BASIC16.76■□□□□ 0.27
TIMP4Q99727 ADRA1A-205ENST00000380582 2089 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
TIMP4Q99727 FARSA-202ENST00000423140 1720 ntTSL 2 BASIC16.76■□□□□ 0.27
TIMP4Q99727 TRAF4-201ENST00000262395 2923 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
TIMP4Q99727 SPSB4-201ENST00000310546 2908 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
TIMP4Q99727 CYP7B1-201ENST00000310193 2202 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
TIMP4Q99727 PROB1-201ENST00000434752 5122 ntAPPRIS P1 BASIC16.76■□□□□ 0.27
TIMP4Q99727 MAPRE3-201ENST00000233121 1892 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
TIMP4Q99727 FOXP1-214ENST00000493089 2703 ntAPPRIS ALT1 TSL 2 BASIC16.76■□□□□ 0.27
TIMP4Q99727 MYC-207ENST00000621592 2366 ntAPPRIS ALT1 TSL 1 (best) BASIC16.75■□□□□ 0.27
TIMP4Q99727 GATA2-202ENST00000430265 2525 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
TIMP4Q99727 ALDH3B1-206ENST00000615463 1300 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
TIMP4Q99727 ACSM2A-201ENST00000219054 1988 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
TIMP4Q99727 B3GALNT1-202ENST00000392779 3221 ntAPPRIS P1 TSL 2 BASIC16.75■□□□□ 0.27
TIMP4Q99727 PMAIP1-202ENST00000316660 1948 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
TIMP4Q99727 MAP3K7CL-206ENST00000399928 1904 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
TIMP4Q99727 MTA1-207ENST00000435036 2888 ntTSL 5 BASIC16.75■□□□□ 0.27
TIMP4Q99727 NMRK1-202ENST00000376808 1121 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
TIMP4Q99727 SCO2-202ENST00000395693 992 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
TIMP4Q99727 CATIP-AS1-202ENST00000441749 480 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
TIMP4Q99727 PDZD7-203ENST00000470414 1057 ntTSL 2 BASIC16.75■□□□□ 0.27
TIMP4Q99727 FAM53C-211ENST00000513056 923 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
TIMP4Q99727 AC087623.2-201ENST00000528407 534 ntTSL 4 BASIC16.75■□□□□ 0.27
TIMP4Q99727 KRTCAP3-207ENST00000543753 956 ntAPPRIS P1 TSL 5 BASIC16.75■□□□□ 0.27
TIMP4Q99727 IFI27L1-206ENST00000554562 571 ntTSL 3 BASIC16.75■□□□□ 0.27
TIMP4Q99727 MIR3917-201ENST00000580971 93 ntBASIC16.75■□□□□ 0.27
TIMP4Q99727 ANKRD36-207ENST00000639293 1168 ntAPPRIS ALT2 TSL 5 BASIC16.75■□□□□ 0.27
TIMP4Q99727 WNT5B-203ENST00000537031 1437 ntAPPRIS P1 TSL 2 BASIC16.75■□□□□ 0.27
TIMP4Q99727 RELL2-201ENST00000297164 2520 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
TIMP4Q99727 KMT2E-207ENST00000476671 2523 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
TIMP4Q99727 CDX4-201ENST00000373514 1515 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
TIMP4Q99727 SETMAR-206ENST00000430981 1671 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
TIMP4Q99727 CHTOP-207ENST00000614256 1840 ntTSL 3 BASIC16.75■□□□□ 0.27
TIMP4Q99727 RARRES1-201ENST00000237696 1952 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
TIMP4Q99727 RASL11B-201ENST00000248706 1995 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
TIMP4Q99727 CAMKK2-207ENST00000404169 2116 ntAPPRIS P4 TSL 1 (best) BASIC16.75■□□□□ 0.27
TIMP4Q99727 KLC1-217ENST00000554280 2426 ntTSL 5 BASIC16.75■□□□□ 0.27
TIMP4Q99727 TRIM41-202ENST00000351937 2696 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 73.2 ms