Protein–RNA interactions for Protein: Q96M19

LINC00477, Putative transmembrane protein encoded by LINC00477, humanhuman

Predictions only

Length 166 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00477Q96M19 NMRK1-203ENST00000376811 2050 ntTSL 2 BASIC13.72□□□□□ -0.21
LINC00477Q96M19 SLC2A14-202ENST00000396589 2335 ntAPPRIS P3 TSL 1 (best) BASIC13.72□□□□□ -0.21
LINC00477Q96M19 UBQLN4-201ENST00000368309 3576 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
LINC00477Q96M19 KRT17P2-202ENST00000326333 1174 ntTSL 2 BASIC13.72□□□□□ -0.21
LINC00477Q96M19 AL445645.1-201ENST00000451318 1019 ntTSL 2 BASIC13.72□□□□□ -0.21
LINC00477Q96M19 FAM131A-208ENST00000453072 1038 ntTSL 2 BASIC13.72□□□□□ -0.21
LINC00477Q96M19 DBNL-214ENST00000456905 1241 ntTSL 2 BASIC13.72□□□□□ -0.21
LINC00477Q96M19 USP46-AS1-201ENST00000503051 1048 ntTSL 3 BASIC13.72□□□□□ -0.21
LINC00477Q96M19 AC098864.1-204ENST00000513752 805 ntTSL 4 BASIC13.72□□□□□ -0.21
LINC00477Q96M19 FOSL1-204ENST00000532401 1132 ntTSL 2 BASIC13.72□□□□□ -0.21
LINC00477Q96M19 FAM213B-215ENST00000537325 1096 ntAPPRIS ALT2 TSL 2 BASIC13.72□□□□□ -0.21
LINC00477Q96M19 AC009065.1-201ENST00000564055 1225 ntBASIC13.72□□□□□ -0.21
LINC00477Q96M19 C19orf25-213ENST00000592872 1287 ntAPPRIS P1 TSL 2 BASIC13.72□□□□□ -0.21
LINC00477Q96M19 BX649632.1-201ENST00000610187 819 ntTSL 3 BASIC13.72□□□□□ -0.21
LINC00477Q96M19 CIAO1-203ENST00000488633 1533 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
LINC00477Q96M19 AL163051.1-201ENST00000569214 1512 ntBASIC13.72□□□□□ -0.21
LINC00477Q96M19 GIT1-203ENST00000394869 3711 ntAPPRIS ALT2 TSL 1 (best) BASIC13.72□□□□□ -0.21
LINC00477Q96M19 ZNF133-211ENST00000538547 2245 ntTSL 2 BASIC13.72□□□□□ -0.21
LINC00477Q96M19 MATN4-205ENST00000537548 1991 ntAPPRIS ALT2 TSL 5 BASIC13.72□□□□□ -0.21
LINC00477Q96M19 SLC27A5-207ENST00000601355 1987 ntAPPRIS ALT2 TSL 2 BASIC13.72□□□□□ -0.21
LINC00477Q96M19 TMEM177-204ENST00000424086 1738 ntAPPRIS P1 TSL 2 BASIC13.72□□□□□ -0.21
LINC00477Q96M19 CD164L2-202ENST00000374027 1457 ntAPPRIS P3 TSL 1 (best) BASIC13.72□□□□□ -0.21
LINC00477Q96M19 ZNF281-201ENST00000294740 4891 ntAPPRIS P3 TSL 1 (best) BASIC13.72□□□□□ -0.21
LINC00477Q96M19 BEGAIN-211ENST00000637646 2911 ntTSL 5 BASIC13.72□□□□□ -0.21
LINC00477Q96M19 AMMECR1-201ENST00000262844 5504 ntAPPRIS P3 TSL 1 (best) BASIC13.72□□□□□ -0.21
LINC00477Q96M19 IRF5-202ENST00000357234 1680 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
LINC00477Q96M19 STARD3-201ENST00000336308 2132 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
LINC00477Q96M19 TMC6-203ENST00000392467 2833 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
LINC00477Q96M19 THEG-201ENST00000342640 1877 ntAPPRIS P4 TSL 1 (best) BASIC13.72□□□□□ -0.21
LINC00477Q96M19 MAPKAP1-205ENST00000373503 3045 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
LINC00477Q96M19 MMP9-201ENST00000372330 2336 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
LINC00477Q96M19 PDS5A-201ENST00000303538 7176 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
LINC00477Q96M19 FMR1-206ENST00000370477 3437 ntTSL 5 BASIC13.71□□□□□ -0.21
LINC00477Q96M19 SERPINH1-215ENST00000533603 2299 ntAPPRIS P1 TSL 2 BASIC13.71□□□□□ -0.21
LINC00477Q96M19 SF1-203ENST00000377387 2947 ntAPPRIS ALT2 TSL 1 (best) BASIC13.71□□□□□ -0.21
LINC00477Q96M19 PHF1-201ENST00000374512 2224 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
LINC00477Q96M19 PTGES-201ENST00000340607 1774 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
LINC00477Q96M19 RNF170-205ENST00000526349 1338 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
LINC00477Q96M19 ELMOD1-202ENST00000443271 1990 ntAPPRIS P1 TSL 2 BASIC13.71□□□□□ -0.21
LINC00477Q96M19 NOMO1-208ENST00000620755 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC13.71□□□□□ -0.21
LINC00477Q96M19 CYP51A1P1-201ENST00000492267 1507 ntBASIC13.71□□□□□ -0.21
LINC00477Q96M19 NFATC4-231ENST00000557451 5613 ntAPPRIS ALT2 TSL 1 (best) BASIC13.71□□□□□ -0.21
LINC00477Q96M19 MAFG-202ENST00000392366 1743 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
LINC00477Q96M19 TLK2-203ENST00000346027 3449 ntAPPRIS P3 TSL 1 (best) BASIC13.71□□□□□ -0.21
LINC00477Q96M19 LINC00535-201ENST00000501400 1914 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
LINC00477Q96M19 MRPL15-201ENST00000260102 1147 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
LINC00477Q96M19 CHPF-202ENST00000373891 1079 ntTSL 2 BASIC13.71□□□□□ -0.21
LINC00477Q96M19 UBE2SP1-201ENST00000450587 669 ntBASIC13.71□□□□□ -0.21
LINC00477Q96M19 CENPA-202ENST00000335756 1452 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
LINC00477Q96M19 WDR13-202ENST00000376729 5469 ntAPPRIS P1 TSL 5 BASIC13.71□□□□□ -0.21
LINC00477Q96M19 RELL2-201ENST00000297164 2520 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
LINC00477Q96M19 HPS3-202ENST00000460120 2745 ntTSL 2 BASIC13.71□□□□□ -0.21
LINC00477Q96M19 EHMT1-204ENST00000462484 2707 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
LINC00477Q96M19 HOXB6-201ENST00000225648 1660 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
LINC00477Q96M19 TSSC4-201ENST00000333256 1686 ntAPPRIS P3 TSL 1 (best) BASIC13.71□□□□□ -0.21
LINC00477Q96M19 MEST-201ENST00000223215 2465 ntAPPRIS P4 TSL 1 (best) BASIC13.71□□□□□ -0.21
LINC00477Q96M19 SYBU-201ENST00000276646 2870 ntAPPRIS ALT2 TSL 1 (best) BASIC13.71□□□□□ -0.22
LINC00477Q96M19 HNRNPUL1-203ENST00000378215 2864 ntTSL 2 BASIC13.71□□□□□ -0.22
LINC00477Q96M19 SPATA6L-207ENST00000475086 1444 ntAPPRIS P1 TSL 2 BASIC13.71□□□□□ -0.22
LINC00477Q96M19 BIN1-208ENST00000376113 1832 ntTSL 1 (best) BASIC13.71□□□□□ -0.22
LINC00477Q96M19 EDC3-214ENST00000568176 1825 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
LINC00477Q96M19 PRSS35-201ENST00000369700 2440 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
LINC00477Q96M19 B3GALNT1-202ENST00000392779 3221 ntAPPRIS P1 TSL 2 BASIC13.71□□□□□ -0.22
LINC00477Q96M19 KLF6-204ENST00000469435 2169 ntTSL 1 (best) BASIC13.71□□□□□ -0.22
LINC00477Q96M19 MOCS2-202ENST00000396954 1785 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
LINC00477Q96M19 SLC35A3-224ENST00000640732 1777 ntTSL 5 BASIC13.71□□□□□ -0.22
LINC00477Q96M19 C18orf21-205ENST00000592875 1581 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
LINC00477Q96M19 ACVRL1-202ENST00000419526 1356 ntTSL 2 BASIC13.71□□□□□ -0.22
LINC00477Q96M19 DBX1-201ENST00000524983 1380 ntAPPRIS P1 TSL 5 BASIC13.71□□□□□ -0.22
LINC00477Q96M19 LINC01979-201ENST00000576738 5271 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
LINC00477Q96M19 CACNA1G-206ENST00000416767 4899 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
LINC00477Q96M19 LINC00574-201ENST00000420557 2318 ntTSL 2 BASIC13.7□□□□□ -0.22
LINC00477Q96M19 NARFL-218ENST00000568545 2486 ntTSL 2 BASIC13.7□□□□□ -0.22
LINC00477Q96M19 NPAS1-201ENST00000439365 1341 ntTSL 2 BASIC13.7□□□□□ -0.22
LINC00477Q96M19 NTRK1-203ENST00000392302 2609 ntTSL 5 BASIC13.7□□□□□ -0.22
LINC00477Q96M19 IRAK3-202ENST00000457197 1853 ntTSL 2 BASIC13.7□□□□□ -0.22
LINC00477Q96M19 SLC26A11-212ENST00000572725 1862 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
LINC00477Q96M19 AC116565.2-201ENST00000637674 1854 ntTSL 2 BASIC13.7□□□□□ -0.22
LINC00477Q96M19 SLX1B-SULT1A4-201ENST00000344620 2424 ntTSL 2 BASIC13.7□□□□□ -0.22
LINC00477Q96M19 ATRIP-203ENST00000357105 2403 ntTSL 2 BASIC13.7□□□□□ -0.22
LINC00477Q96M19 AC009102.3-201ENST00000623118 1491 ntBASIC13.7□□□□□ -0.22
LINC00477Q96M19 TBKBP1-204ENST00000622396 2010 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
LINC00477Q96M19 EMC6-201ENST00000248378 653 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
LINC00477Q96M19 PRSS3-201ENST00000342836 1144 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
LINC00477Q96M19 FAM26F-202ENST00000368605 1117 ntAPPRIS P1 TSL 5 BASIC13.7□□□□□ -0.22
LINC00477Q96M19 NPM3-201ENST00000370110 877 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
LINC00477Q96M19 MIR149-201ENST00000384879 89 ntBASIC13.7□□□□□ -0.22
LINC00477Q96M19 SMIM19-201ENST00000414154 793 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
LINC00477Q96M19 CRYGFP-201ENST00000418459 633 ntBASIC13.7□□□□□ -0.22
LINC00477Q96M19 CT47A1-201ENST00000433030 1288 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
LINC00477Q96M19 AL355355.2-201ENST00000442321 338 ntBASIC13.7□□□□□ -0.22
LINC00477Q96M19 CERNA3-201ENST00000521403 557 ntTSL 3 BASIC13.7□□□□□ -0.22
LINC00477Q96M19 AC091564.5-201ENST00000526456 820 ntTSL 4 BASIC13.7□□□□□ -0.22
LINC00477Q96M19 ANAPC11-207ENST00000572639 578 ntAPPRIS P1 TSL 3 BASIC13.7□□□□□ -0.22
LINC00477Q96M19 AC008649.1-201ENST00000589557 516 ntTSL 2 BASIC13.7□□□□□ -0.22
LINC00477Q96M19 AC008763.3-201ENST00000597959 777 ntAPPRIS P1 TSL 4 BASIC13.7□□□□□ -0.22
LINC00477Q96M19 DECR2-212ENST00000627716 352 ntTSL 2 BASIC13.7□□□□□ -0.22
LINC00477Q96M19 TMEM59L-201ENST00000262817 1613 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
LINC00477Q96M19 PLCD3-212ENST00000619929 6107 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
LINC00477Q96M19 AL096828.2-201ENST00000567259 1965 ntBASIC13.7□□□□□ -0.22
Retrieved 100 of 98,524 protein–RNA pairs in 29.9 ms