Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 EGLN2-201ENST00000303961 2102 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
HDDC3Q8N4P3 GFI1-201ENST00000294702 2784 ntAPPRIS P1 TSL 2 BASIC18.32■□□□□ 0.52
HDDC3Q8N4P3 DISC1-215ENST00000602281 2761 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
HDDC3Q8N4P3 ABHD14B-204ENST00000461108 1397 ntTSL 2 BASIC18.32■□□□□ 0.52
HDDC3Q8N4P3 SMARCC2-201ENST00000267064 4076 ntAPPRIS P4 TSL 1 (best) BASIC18.32■□□□□ 0.52
HDDC3Q8N4P3 SDHAP2-201ENST00000455183 2001 ntBASIC18.32■□□□□ 0.52
HDDC3Q8N4P3 SEMA3D-202ENST00000444867 1605 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
HDDC3Q8N4P3 SYNM-202ENST00000336292 7394 ntAPPRIS P4 TSL 1 (best) BASIC18.32■□□□□ 0.52
HDDC3Q8N4P3 KDM5C-203ENST00000375383 5122 ntAPPRIS ALT2 TSL 5 BASIC18.32■□□□□ 0.52
HDDC3Q8N4P3 SPIN2B-202ENST00000333933 1258 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
HDDC3Q8N4P3 RAB24-204ENST00000393611 1236 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
HDDC3Q8N4P3 CRELD2-202ENST00000403427 1242 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
HDDC3Q8N4P3 C1QB-203ENST00000509305 1254 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
HDDC3Q8N4P3 SLC9A3R2-208ENST00000566198 1199 ntTSL 2 BASIC18.32■□□□□ 0.52
HDDC3Q8N4P3 AC011840.4-201ENST00000578471 627 ntBASIC18.32■□□□□ 0.52
HDDC3Q8N4P3 BX640515.1-201ENST00000617215 977 ntBASIC18.32■□□□□ 0.52
HDDC3Q8N4P3 CEACAM3-208ENST00000630848 1110 ntAPPRIS ALT2 TSL 5 BASIC18.32■□□□□ 0.52
HDDC3Q8N4P3 CD55-201ENST00000314754 2220 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
HDDC3Q8N4P3 KAT5-203ENST00000377046 2237 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
HDDC3Q8N4P3 VSTM2A-203ENST00000404951 2521 ntTSL 5 BASIC18.32■□□□□ 0.52
HDDC3Q8N4P3 SEPT6-202ENST00000354228 1576 ntAPPRIS P4 TSL 1 (best) BASIC18.32■□□□□ 0.52
HDDC3Q8N4P3 RANBP10-201ENST00000317506 5341 ntAPPRIS P2 TSL 1 (best) BASIC18.32■□□□□ 0.52
HDDC3Q8N4P3 RANBP10-209ENST00000630626 5305 ntAPPRIS ALT2 TSL 5 BASIC18.32■□□□□ 0.52
HDDC3Q8N4P3 FGF14-IT1-202ENST00000607251 2123 ntTSL 2 BASIC18.32■□□□□ 0.52
HDDC3Q8N4P3 IGFBP3-210ENST00000613132 2412 ntTSL 5 BASIC18.32■□□□□ 0.52
HDDC3Q8N4P3 IFNLR1-205ENST00000374421 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
HDDC3Q8N4P3 TMEM128-201ENST00000254742 1737 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
HDDC3Q8N4P3 RGS3-202ENST00000342620 1714 ntTSL 5 BASIC18.32■□□□□ 0.52
HDDC3Q8N4P3 CRTAC1-203ENST00000370597 2890 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
HDDC3Q8N4P3 JMJD4-202ENST00000438896 2502 ntTSL 2 BASIC18.31■□□□□ 0.52
HDDC3Q8N4P3 AOC3-204ENST00000591562 2522 ntTSL 2 BASIC18.31■□□□□ 0.52
HDDC3Q8N4P3 WNT9B-201ENST00000290015 1376 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
HDDC3Q8N4P3 HMGA1-201ENST00000311487 1920 ntAPPRIS P4 TSL 1 (best) BASIC18.31■□□□□ 0.52
HDDC3Q8N4P3 GOLGA3-203ENST00000456883 5496 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
HDDC3Q8N4P3 SETD3-201ENST00000329331 1330 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
HDDC3Q8N4P3 YTHDC2-207ENST00000515883 2629 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
HDDC3Q8N4P3 GHDC-212ENST00000593209 1827 ntTSL 5 BASIC18.31■□□□□ 0.52
HDDC3Q8N4P3 CLINT1-207ENST00000523908 2346 ntAPPRIS ALT1 TSL 1 (best) BASIC18.31■□□□□ 0.52
HDDC3Q8N4P3 C6orf15-201ENST00000259870 1140 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
HDDC3Q8N4P3 SUSD4-203ENST00000344029 1056 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
HDDC3Q8N4P3 TEX30-205ENST00000376029 959 ntTSL 2 BASIC18.31■□□□□ 0.52
HDDC3Q8N4P3 DUSP15-204ENST00000398083 1212 ntTSL 5 BASIC18.31■□□□□ 0.52
HDDC3Q8N4P3 AL590627.1-203ENST00000421194 1026 ntBASIC18.31■□□□□ 0.52
HDDC3Q8N4P3 LEF1-AS1-201ENST00000436413 1045 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
HDDC3Q8N4P3 SLC2A1-204ENST00000460369 541 ntTSL 2 BASIC18.31■□□□□ 0.52
HDDC3Q8N4P3 LINC00595-207ENST00000476909 792 ntTSL 2 BASIC18.31■□□□□ 0.52
HDDC3Q8N4P3 NDUFA6-204ENST00000617763 1183 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
HDDC3Q8N4P3 HSP90B1-211ENST00000640977 1127 ntTSL 5 BASIC18.31■□□□□ 0.52
HDDC3Q8N4P3 SLC31A2-201ENST00000259392 1785 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
HDDC3Q8N4P3 MAP4K4-204ENST00000350198 7316 ntTSL 5 BASIC18.31■□□□□ 0.52
HDDC3Q8N4P3 GPR35-201ENST00000319838 2249 ntAPPRIS P3 TSL 2 BASIC18.31■□□□□ 0.52
HDDC3Q8N4P3 CD81-AS1-201ENST00000413483 1460 ntTSL 2 BASIC18.31■□□□□ 0.52
HDDC3Q8N4P3 NOM1-201ENST00000275820 6077 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
HDDC3Q8N4P3 OGFOD3-202ENST00000329197 1652 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
HDDC3Q8N4P3 RNPS1-219ENST00000566397 1685 ntTSL 2 BASIC18.31■□□□□ 0.52
HDDC3Q8N4P3 ADORA2A-215ENST00000618076 2630 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
HDDC3Q8N4P3 ZSWIM5-201ENST00000359600 5819 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
HDDC3Q8N4P3 RALY-203ENST00000375114 6430 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
HDDC3Q8N4P3 LINC01356-201ENST00000401018 1819 ntTSL 2 BASIC18.3■□□□□ 0.52
HDDC3Q8N4P3 SPAG16-204ENST00000413312 2258 ntTSL 5 BASIC18.3■□□□□ 0.52
HDDC3Q8N4P3 MEGF9-201ENST00000373930 6298 ntAPPRIS P1 TSL 2 BASIC18.3■□□□□ 0.52
HDDC3Q8N4P3 OGFOD2-201ENST00000228922 1780 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
HDDC3Q8N4P3 TDRP-203ENST00000523656 2622 ntTSL 5 BASIC18.3■□□□□ 0.52
HDDC3Q8N4P3 USP21-201ENST00000289865 2195 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
HDDC3Q8N4P3 MROH1-202ENST00000423230 1712 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
HDDC3Q8N4P3 PDP1-208ENST00000520728 2554 ntAPPRIS P3 TSL 1 (best) BASIC18.3■□□□□ 0.52
HDDC3Q8N4P3 CD1E-209ENST00000368164 869 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
HDDC3Q8N4P3 MRPL3P1-201ENST00000400109 1033 ntBASIC18.3■□□□□ 0.52
HDDC3Q8N4P3 IGHV3-47-201ENST00000425060 335 ntBASIC18.3■□□□□ 0.52
HDDC3Q8N4P3 KRT16P4-201ENST00000453883 522 ntBASIC18.3■□□□□ 0.52
HDDC3Q8N4P3 AP005717.1-202ENST00000523563 419 ntTSL 3 BASIC18.3■□□□□ 0.52
HDDC3Q8N4P3 ABR-204ENST00000543210 1049 ntTSL 2 BASIC18.3■□□□□ 0.52
HDDC3Q8N4P3 C12orf76-202ENST00000546627 461 ntTSL 4 BASIC18.3■□□□□ 0.52
HDDC3Q8N4P3 TCTN1-223ENST00000550703 2149 ntTSL 2 BASIC18.3■□□□□ 0.52
HDDC3Q8N4P3 AL162171.1-201ENST00000556328 718 ntTSL 3 BASIC18.3■□□□□ 0.52
HDDC3Q8N4P3 ABR-217ENST00000572441 563 ntTSL 4 BASIC18.3■□□□□ 0.52
HDDC3Q8N4P3 FCGRT-210ENST00000596975 1054 ntTSL 5 BASIC18.3■□□□□ 0.52
HDDC3Q8N4P3 SPACA1-201ENST00000237201 1499 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
HDDC3Q8N4P3 LRP1-204ENST00000553277 1693 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
HDDC3Q8N4P3 AC138430.1-201ENST00000586064 5409 ntTSL 2 BASIC18.3■□□□□ 0.52
HDDC3Q8N4P3 IMPDH1-214ENST00000496200 2283 ntTSL 2 BASIC18.3■□□□□ 0.52
HDDC3Q8N4P3 ADAMTS10-205ENST00000595838 2458 ntTSL 2 BASIC18.3■□□□□ 0.52
HDDC3Q8N4P3 RIOX2-201ENST00000333396 5347 ntAPPRIS ALT1 TSL 1 (best) BASIC18.3■□□□□ 0.52
HDDC3Q8N4P3 HEXDC-203ENST00000577944 1820 ntTSL 5 BASIC18.3■□□□□ 0.52
HDDC3Q8N4P3 NKX6-1-201ENST00000295886 2628 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
HDDC3Q8N4P3 TNFSF11-203ENST00000398795 2199 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
HDDC3Q8N4P3 ST3GAL4-217ENST00000534083 1919 ntAPPRIS ALT1 TSL 5 BASIC18.29■□□□□ 0.52
HDDC3Q8N4P3 UBTF-203ENST00000393606 2683 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
HDDC3Q8N4P3 PRKCSH-209ENST00000589838 1898 ntAPPRIS P3 TSL 1 (best) BASIC18.29■□□□□ 0.52
HDDC3Q8N4P3 KHNYN-206ENST00000556842 2443 ntAPPRIS P1 TSL 2 BASIC18.29■□□□□ 0.52
HDDC3Q8N4P3 E4F1-201ENST00000301727 2573 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
HDDC3Q8N4P3 PNOC-201ENST00000301908 1200 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
HDDC3Q8N4P3 DYNLL1-203ENST00000392509 814 ntAPPRIS P1 TSL 3 BASIC18.29■□□□□ 0.52
HDDC3Q8N4P3 KRT18P13-201ENST00000400056 1290 ntBASIC18.29■□□□□ 0.52
HDDC3Q8N4P3 C7orf34-201ENST00000409607 766 ntAPPRIS P2 TSL 1 (best) BASIC18.29■□□□□ 0.52
HDDC3Q8N4P3 SATB1-AS1-201ENST00000414198 737 ntTSL 2 BASIC18.29■□□□□ 0.52
HDDC3Q8N4P3 PMS2P1-201ENST00000431037 1228 ntBASIC18.29■□□□□ 0.52
HDDC3Q8N4P3 AC091607.1-201ENST00000490318 1060 ntBASIC18.29■□□□□ 0.52
HDDC3Q8N4P3 PDCD6-207ENST00000509581 1156 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
HDDC3Q8N4P3 AC099811.2-203ENST00000592574 958 ntAPPRIS P1 TSL 5 BASIC18.29■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 38.9 ms