Protein–RNA interactions for Protein: Q8N1M1

BEST3, Bestrophin-3, humanhuman

Predictions only

Length 668 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BEST3Q8N1M1 CXCL12-204ENST00000395793 665 ntTSL 5 BASIC16.97■□□□□ 0.31
BEST3Q8N1M1 PTX4-202ENST00000440447 1117 ntTSL 5 BASIC16.97■□□□□ 0.31
BEST3Q8N1M1 ZNF346-205ENST00000506693 1276 ntTSL 2 BASIC16.97■□□□□ 0.31
BEST3Q8N1M1 TFF3-204ENST00000518498 1109 ntAPPRIS P2 TSL 1 (best) BASIC16.97■□□□□ 0.31
BEST3Q8N1M1 TMEM41B-203ENST00000527813 803 ntTSL 5 BASIC16.97■□□□□ 0.31
BEST3Q8N1M1 REEP1-209ENST00000541910 969 ntTSL 2 BASIC16.97■□□□□ 0.31
BEST3Q8N1M1 RAP1B-228ENST00000542145 1060 ntTSL 2 BASIC16.97■□□□□ 0.31
BEST3Q8N1M1 AC079385.1-201ENST00000551505 570 ntTSL 4 BASIC16.97■□□□□ 0.31
BEST3Q8N1M1 MIR2117HG-201ENST00000588060 506 ntTSL 4 BASIC16.97■□□□□ 0.31
BEST3Q8N1M1 AP002414.4-201ENST00000589764 1148 ntBASIC16.97■□□□□ 0.31
BEST3Q8N1M1 CHMP2A-208ENST00000601220 885 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
BEST3Q8N1M1 USP39-202ENST00000409025 1946 ntTSL 5 BASIC16.97■□□□□ 0.31
BEST3Q8N1M1 C16orf59-210ENST00000569496 1911 ntAPPRIS ALT2 TSL 5 BASIC16.97■□□□□ 0.31
BEST3Q8N1M1 AD000671.2-201ENST00000589807 1925 ntAPPRIS P1 TSL 2 BASIC16.97■□□□□ 0.31
BEST3Q8N1M1 SIGLEC14-201ENST00000360844 2035 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
BEST3Q8N1M1 EXTL3-201ENST00000220562 6483 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
BEST3Q8N1M1 MFSD1-201ENST00000264266 1594 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
BEST3Q8N1M1 ESPN-216ENST00000636330 4731 ntAPPRIS ALT2 TSL 5 BASIC16.97■□□□□ 0.31
BEST3Q8N1M1 ARFRP1-207ENST00000612157 1698 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
BEST3Q8N1M1 FAM69B-201ENST00000371691 2410 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
BEST3Q8N1M1 CCT5-214ENST00000515676 1997 ntTSL 2 BASIC16.97■□□□□ 0.31
BEST3Q8N1M1 TMEM250-201ENST00000418388 2823 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
BEST3Q8N1M1 TWIST2-202ENST00000612363 1404 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
BEST3Q8N1M1 NOMO3-202ENST00000399336 4356 ntAPPRIS P2 TSL 1 (best) BASIC16.96■□□□□ 0.31
BEST3Q8N1M1 CPNE7-201ENST00000268720 2657 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
BEST3Q8N1M1 SMPD4-202ENST00000409031 4896 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
BEST3Q8N1M1 SEMA6C-210ENST00000621728 1918 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
BEST3Q8N1M1 CPZ-201ENST00000315782 2136 ntAPPRIS P3 TSL 1 (best) BASIC16.96■□□□□ 0.31
BEST3Q8N1M1 RABAC1-201ENST00000222008 821 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
BEST3Q8N1M1 S100A11-201ENST00000271638 594 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
BEST3Q8N1M1 TNNI3-201ENST00000344887 840 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
BEST3Q8N1M1 MRPL43-205ENST00000370234 798 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
BEST3Q8N1M1 AC093734.1-201ENST00000416100 242 ntTSL 3 BASIC16.96■□□□□ 0.31
BEST3Q8N1M1 AL450487.1-201ENST00000426799 995 ntBASIC16.96■□□□□ 0.31
BEST3Q8N1M1 MRPL2-208ENST00000489623 570 ntTSL 2 BASIC16.96■□□□□ 0.31
BEST3Q8N1M1 REPIN1-217ENST00000518514 478 ntTSL 3 BASIC16.96■□□□□ 0.31
BEST3Q8N1M1 MRPL52-215ENST00000556840 398 ntTSL 2 BASIC16.96■□□□□ 0.31
BEST3Q8N1M1 MIR3652-201ENST00000579335 131 ntBASIC16.96■□□□□ 0.31
BEST3Q8N1M1 MIR3180-1-201ENST00000580374 94 ntBASIC16.96■□□□□ 0.31
BEST3Q8N1M1 MIR3180-3-201ENST00000584616 94 ntBASIC16.96■□□□□ 0.31
BEST3Q8N1M1 AC005332.3-201ENST00000589904 676 ntBASIC16.96■□□□□ 0.31
BEST3Q8N1M1 AL121894.2-201ENST00000602977 491 ntBASIC16.96■□□□□ 0.31
BEST3Q8N1M1 GLYCTK-201ENST00000305690 1371 ntTSL 5 BASIC16.96■□□□□ 0.31
BEST3Q8N1M1 SEPT6-202ENST00000354228 1576 ntAPPRIS P4 TSL 1 (best) BASIC16.96■□□□□ 0.31
BEST3Q8N1M1 ACBD4-207ENST00000586346 1579 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
BEST3Q8N1M1 CGRRF1-201ENST00000216420 2057 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
BEST3Q8N1M1 BID-205ENST00000399774 2167 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
BEST3Q8N1M1 INAVA-202ENST00000413687 2197 ntAPPRIS P2 TSL 2 BASIC16.96■□□□□ 0.31
BEST3Q8N1M1 MXD3-202ENST00000427908 2269 ntTSL 2 BASIC16.96■□□□□ 0.31
BEST3Q8N1M1 SERPINH1-215ENST00000533603 2299 ntAPPRIS P1 TSL 2 BASIC16.96■□□□□ 0.31
BEST3Q8N1M1 ANKRD17-211ENST00000639793 3486 ntTSL 5 BASIC16.96■□□□□ 0.31
BEST3Q8N1M1 FGFR3-202ENST00000340107 4293 ntAPPRIS ALT2 TSL 5 BASIC16.96■□□□□ 0.31
BEST3Q8N1M1 SENP6-201ENST00000327284 2700 ntTSL 2 BASIC16.96■□□□□ 0.3
BEST3Q8N1M1 KAT5-203ENST00000377046 2237 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.3
BEST3Q8N1M1 ASMTL-201ENST00000381317 2027 ntAPPRIS P3 TSL 1 (best) BASIC16.96■□□□□ 0.3
BEST3Q8N1M1 C11orf80-214ENST00000532565 1948 ntAPPRIS ALT2 TSL 5 BASIC16.96■□□□□ 0.3
BEST3Q8N1M1 MYOG-201ENST00000241651 1528 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.3
BEST3Q8N1M1 KRT18P1-202ENST00000452408 1331 ntBASIC16.96■□□□□ 0.3
BEST3Q8N1M1 MIB2-203ENST00000378712 2890 ntTSL 2 BASIC16.95■□□□□ 0.3
BEST3Q8N1M1 TTLL3-209ENST00000426895 2767 ntAPPRIS P2 TSL 2 BASIC16.95■□□□□ 0.3
BEST3Q8N1M1 ELOC-209ENST00000602840 2780 ntTSL 5 BASIC16.95■□□□□ 0.3
BEST3Q8N1M1 FBXO24-201ENST00000241071 2276 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
BEST3Q8N1M1 IKBKG-214ENST00000618670 2069 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
BEST3Q8N1M1 BTG3-201ENST00000339775 1485 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
BEST3Q8N1M1 LGI3-201ENST00000306317 3272 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
BEST3Q8N1M1 PCDHA4-201ENST00000378125 2328 ntTSL 5 BASIC16.95■□□□□ 0.3
BEST3Q8N1M1 DTNBP1-203ENST00000355917 1359 ntTSL 5 BASIC16.95■□□□□ 0.3
BEST3Q8N1M1 CCDC74B-202ENST00000392984 1353 ntAPPRIS ALT2 TSL 5 BASIC16.95■□□□□ 0.3
BEST3Q8N1M1 DGUOK-201ENST00000264093 1144 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
BEST3Q8N1M1 BAALC-202ENST00000306391 243 ntTSL 5 BASIC16.95■□□□□ 0.3
BEST3Q8N1M1 BAALC-204ENST00000330955 222 ntTSL 5 BASIC16.95■□□□□ 0.3
BEST3Q8N1M1 UXT-201ENST00000333119 574 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
BEST3Q8N1M1 DGUOK-202ENST00000348222 880 ntTSL 2 BASIC16.95■□□□□ 0.3
BEST3Q8N1M1 AP000593.1-201ENST00000393668 712 ntBASIC16.95■□□□□ 0.3
BEST3Q8N1M1 LENG8-AS1-201ENST00000416022 582 ntTSL 3 BASIC16.95■□□□□ 0.3
BEST3Q8N1M1 SSR4P1-202ENST00000429427 967 ntTSL 5 BASIC16.95■□□□□ 0.3
BEST3Q8N1M1 PLXND1-205ENST00000504689 546 ntTSL 3 BASIC16.95■□□□□ 0.3
BEST3Q8N1M1 KRT18P41-201ENST00000518924 1277 ntBASIC16.95■□□□□ 0.3
BEST3Q8N1M1 NUTF2-205ENST00000568396 1179 ntAPPRIS P1 TSL 3 BASIC16.95■□□□□ 0.3
BEST3Q8N1M1 DGUOK-208ENST00000629438 1029 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
BEST3Q8N1M1 ZBTB33-201ENST00000326624 5211 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
BEST3Q8N1M1 FOXN3-214ENST00000557258 2692 ntAPPRIS P3 TSL 1 (best) BASIC16.95■□□□□ 0.3
BEST3Q8N1M1 GAREM2-201ENST00000401533 4161 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
BEST3Q8N1M1 CNIH3-201ENST00000272133 2558 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
BEST3Q8N1M1 CLN3-206ENST00000360019 1840 ntTSL 2 BASIC16.95■□□□□ 0.3
BEST3Q8N1M1 ZNF211-204ENST00000347302 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC16.95■□□□□ 0.3
BEST3Q8N1M1 AC093503.3-201ENST00000624917 2352 ntBASIC16.95■□□□□ 0.3
BEST3Q8N1M1 OTUD1-201ENST00000376495 2933 ntAPPRIS P1 BASIC16.95■□□□□ 0.3
BEST3Q8N1M1 AC005082.1-201ENST00000413042 2259 ntBASIC16.95■□□□□ 0.3
BEST3Q8N1M1 REEP2-202ENST00000378339 2170 ntAPPRIS ALT1 TSL 1 (best) BASIC16.95■□□□□ 0.3
BEST3Q8N1M1 CLUH-201ENST00000435359 5224 ntAPPRIS P2 TSL 5 BASIC16.95■□□□□ 0.3
BEST3Q8N1M1 AGER-205ENST00000375069 1538 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
BEST3Q8N1M1 AK3-202ENST00000381809 2736 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
BEST3Q8N1M1 STN1-201ENST00000224950 1417 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
BEST3Q8N1M1 POMC-204ENST00000405623 1426 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
BEST3Q8N1M1 ERVK13-1-203ENST00000564340 1449 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
BEST3Q8N1M1 ELMOD1-202ENST00000443271 1990 ntAPPRIS P1 TSL 2 BASIC16.95■□□□□ 0.3
BEST3Q8N1M1 IQGAP2-201ENST00000274364 5844 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
BEST3Q8N1M1 FBXO44-201ENST00000251546 1896 ntTSL 2 BASIC16.95■□□□□ 0.3
BEST3Q8N1M1 SHBG-201ENST00000340624 1311 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 34.5 ms