Protein–RNA interactions for Protein: Q6ZMZ3

SYNE3, Nesprin-3, humanhuman

Predictions only

Length 975 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3Q6ZMZ3 GLRX2-201ENST00000367439 701 ntAPPRIS ALT2 TSL 1 (best) BASIC21.53■■□□□ 1.04
SYNE3Q6ZMZ3 SDCBP2-203ENST00000381808 1261 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
SYNE3Q6ZMZ3 RCN1P1-201ENST00000400413 996 ntBASIC21.53■■□□□ 1.04
SYNE3Q6ZMZ3 AK4P3-201ENST00000418260 669 ntBASIC21.53■■□□□ 1.04
SYNE3Q6ZMZ3 AC008105.2-201ENST00000420431 579 ntTSL 4 BASIC21.53■■□□□ 1.04
SYNE3Q6ZMZ3 AC012618.3-202ENST00000440004 472 ntTSL 4 BASIC21.53■■□□□ 1.04
SYNE3Q6ZMZ3 TMEM64-204ENST00000519519 873 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
SYNE3Q6ZMZ3 CD81-212ENST00000526072 1172 ntTSL 5 BASIC21.53■■□□□ 1.04
SYNE3Q6ZMZ3 EIF2AK4-209ENST00000560648 687 ntTSL 3 BASIC21.53■■□□□ 1.04
SYNE3Q6ZMZ3 ELAC2-212ENST00000578071 579 ntTSL 4 BASIC21.53■■□□□ 1.04
SYNE3Q6ZMZ3 MED9-202ENST00000580462 565 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
SYNE3Q6ZMZ3 ACSM2A-201ENST00000219054 1988 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
SYNE3Q6ZMZ3 LINC00461-203ENST00000504246 2300 ntTSL 2 BASIC21.53■■□□□ 1.04
SYNE3Q6ZMZ3 LONRF1-208ENST00000533751 3043 ntTSL 5 BASIC21.53■■□□□ 1.04
SYNE3Q6ZMZ3 HIPK1-207ENST00000369561 3777 ntTSL 5 BASIC21.53■■□□□ 1.04
SYNE3Q6ZMZ3 KRBOX1-AS1-201ENST00000447834 2134 ntTSL 2 BASIC21.53■■□□□ 1.04
SYNE3Q6ZMZ3 GSDMD-201ENST00000262580 1762 ntAPPRIS P2 TSL 1 (best) BASIC21.53■■□□□ 1.04
SYNE3Q6ZMZ3 EFTUD1P1-204ENST00000560401 1798 ntBASIC21.53■■□□□ 1.04
SYNE3Q6ZMZ3 NEU4-203ENST00000404257 2352 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
SYNE3Q6ZMZ3 AC099343.3-201ENST00000605834 2503 ntBASIC21.53■■□□□ 1.04
SYNE3Q6ZMZ3 RNF169-201ENST00000299563 7823 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
SYNE3Q6ZMZ3 BANP-202ENST00000355022 2164 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
SYNE3Q6ZMZ3 EVI5L-201ENST00000270530 3855 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
SYNE3Q6ZMZ3 ZNF114-206ENST00000600687 1742 ntAPPRIS P1 TSL 5 BASIC21.52■■□□□ 1.04
SYNE3Q6ZMZ3 AC027097.1-202ENST00000592201 1954 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
SYNE3Q6ZMZ3 BEGAIN-202ENST00000443071 2744 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
SYNE3Q6ZMZ3 SLBP-201ENST00000318386 1635 ntAPPRIS ALT1 TSL 3 BASIC21.52■■□□□ 1.04
SYNE3Q6ZMZ3 ZDHHC20-201ENST00000320220 1351 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
SYNE3Q6ZMZ3 FAM110D-201ENST00000374268 2858 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
SYNE3Q6ZMZ3 FAM111A-204ENST00000528737 6189 ntAPPRIS P1 TSL 2 BASIC21.52■■□□□ 1.04
SYNE3Q6ZMZ3 LCE4A-202ENST00000368777 672 ntAPPRIS P1 TSL 2 BASIC21.52■■□□□ 1.04
SYNE3Q6ZMZ3 RNF152P1-201ENST00000397754 604 ntBASIC21.52■■□□□ 1.04
SYNE3Q6ZMZ3 TSPY5P-201ENST00000426936 936 ntBASIC21.52■■□□□ 1.04
SYNE3Q6ZMZ3 AP003396.1-201ENST00000501918 507 ntTSL 5 BASIC21.52■■□□□ 1.04
SYNE3Q6ZMZ3 CNTD2-203ENST00000513948 787 ntAPPRIS ALT2 TSL 2 BASIC21.52■■□□□ 1.04
SYNE3Q6ZMZ3 RN7SL850P-201ENST00000579959 291 ntBASIC21.52■■□□□ 1.04
SYNE3Q6ZMZ3 UBA52-210ENST00000598780 668 ntAPPRIS P1 TSL 3 BASIC21.52■■□□□ 1.04
SYNE3Q6ZMZ3 RHOU-201ENST00000366691 4372 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
SYNE3Q6ZMZ3 CNOT11-201ENST00000289382 2599 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
SYNE3Q6ZMZ3 RCAN3-205ENST00000436717 2574 ntTSL 3 BASIC21.52■■□□□ 1.04
SYNE3Q6ZMZ3 LRP1-204ENST00000553277 1693 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
SYNE3Q6ZMZ3 RAB29-205ENST00000446390 1441 ntTSL 2 BASIC21.52■■□□□ 1.04
SYNE3Q6ZMZ3 SLC35G2-202ENST00000446465 2060 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
SYNE3Q6ZMZ3 PCCA-203ENST00000376286 2481 ntTSL 2 BASIC21.52■■□□□ 1.04
SYNE3Q6ZMZ3 DOK4-218ENST00000569548 1848 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
SYNE3Q6ZMZ3 CCDC17-202ENST00000421127 2216 ntAPPRIS ALT2 TSL 2 BASIC21.52■■□□□ 1.04
SYNE3Q6ZMZ3 UROS-202ENST00000368778 1556 ntTSL 2 BASIC21.52■■□□□ 1.04
SYNE3Q6ZMZ3 MRM2-203ENST00000440306 1570 ntAPPRIS P1 TSL 5 BASIC21.52■■□□□ 1.04
SYNE3Q6ZMZ3 GMCL1P1-201ENST00000463439 1581 ntBASIC21.52■■□□□ 1.04
SYNE3Q6ZMZ3 EDA-204ENST00000374553 5272 ntAPPRIS ALT1 TSL 1 (best) BASIC21.52■■□□□ 1.04
SYNE3Q6ZMZ3 KCNQ2-218ENST00000629676 2399 ntTSL 5 BASIC21.52■■□□□ 1.04
SYNE3Q6ZMZ3 KCNQ2-205ENST00000360480 2775 ntAPPRIS ALT2 TSL 5 BASIC21.52■■□□□ 1.03
SYNE3Q6ZMZ3 ELOC-209ENST00000602840 2780 ntTSL 5 BASIC21.52■■□□□ 1.03
SYNE3Q6ZMZ3 CAB39-203ENST00000410084 1324 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.03
SYNE3Q6ZMZ3 IAH1-202ENST00000470914 2137 ntTSL 1 (best) BASIC21.52■■□□□ 1.03
SYNE3Q6ZMZ3 AATF-208ENST00000619387 2141 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.03
SYNE3Q6ZMZ3 RNH1-201ENST00000354420 1894 ntAPPRIS P1 TSL 5 BASIC21.52■■□□□ 1.03
SYNE3Q6ZMZ3 CBL-204ENST00000634840 4813 ntAPPRIS ALT2 TSL 5 BASIC21.52■■□□□ 1.03
SYNE3Q6ZMZ3 SDHAP2-201ENST00000455183 2001 ntBASIC21.51■■□□□ 1.03
SYNE3Q6ZMZ3 KLF6-204ENST00000469435 2169 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
SYNE3Q6ZMZ3 ZMYM5-202ENST00000382905 1382 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
SYNE3Q6ZMZ3 NMRK1-203ENST00000376811 2050 ntTSL 2 BASIC21.51■■□□□ 1.03
SYNE3Q6ZMZ3 MTMR12-201ENST00000264934 2215 ntTSL 2 BASIC21.51■■□□□ 1.03
SYNE3Q6ZMZ3 AL390961.4-201ENST00000623958 2535 ntBASIC21.51■■□□□ 1.03
SYNE3Q6ZMZ3 KLK14-201ENST00000156499 1060 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
SYNE3Q6ZMZ3 ST8SIA1-202ENST00000381424 1036 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
SYNE3Q6ZMZ3 ROMO1-205ENST00000397416 288 ntAPPRIS P1 TSL 3 BASIC21.51■■□□□ 1.03
SYNE3Q6ZMZ3 TMPOP1-202ENST00000424642 1267 ntBASIC21.51■■□□□ 1.03
SYNE3Q6ZMZ3 ZNF706-204ENST00000518336 501 ntAPPRIS P1 TSL 4 BASIC21.51■■□□□ 1.03
SYNE3Q6ZMZ3 PSMD8-202ENST00000585598 541 ntTSL 5 BASIC21.51■■□□□ 1.03
SYNE3Q6ZMZ3 AC011498.2-201ENST00000588798 540 ntTSL 3 BASIC21.51■■□□□ 1.03
SYNE3Q6ZMZ3 C16orf74-207ENST00000602914 761 ntAPPRIS ALT2 TSL 2 BASIC21.51■■□□□ 1.03
SYNE3Q6ZMZ3 AL157888.1-201ENST00000631930 593 ntBASIC21.51■■□□□ 1.03
SYNE3Q6ZMZ3 LGI3-201ENST00000306317 3272 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
SYNE3Q6ZMZ3 ZNF668-202ENST00000394983 2717 ntAPPRIS P1 TSL 5 BASIC21.51■■□□□ 1.03
SYNE3Q6ZMZ3 TMEM177-204ENST00000424086 1738 ntAPPRIS P1 TSL 2 BASIC21.51■■□□□ 1.03
SYNE3Q6ZMZ3 CTSD-212ENST00000637815 2003 ntAPPRIS ALT2 TSL 5 BASIC21.51■■□□□ 1.03
SYNE3Q6ZMZ3 DDX42-202ENST00000389924 3939 ntAPPRIS P1 TSL 5 BASIC21.51■■□□□ 1.03
SYNE3Q6ZMZ3 GAMT-202ENST00000447102 1769 ntTSL 2 BASIC21.51■■□□□ 1.03
SYNE3Q6ZMZ3 RNF146-213ENST00000610153 2070 ntAPPRIS ALT1 TSL 2 BASIC21.51■■□□□ 1.03
SYNE3Q6ZMZ3 SAMD11-210ENST00000616016 2391 ntTSL 5 BASIC21.51■■□□□ 1.03
SYNE3Q6ZMZ3 SAMD11-215ENST00000618779 2368 ntAPPRIS ALT2 TSL 5 BASIC21.51■■□□□ 1.03
SYNE3Q6ZMZ3 ANKS3-201ENST00000304283 2662 ntAPPRIS P1 TSL 2 BASIC21.51■■□□□ 1.03
SYNE3Q6ZMZ3 AK1-203ENST00000373176 2266 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
SYNE3Q6ZMZ3 ORC5-201ENST00000297431 1958 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
SYNE3Q6ZMZ3 BICD1-207ENST00000551848 1962 ntBASIC21.5■■□□□ 1.03
SYNE3Q6ZMZ3 AGFG1-201ENST00000310078 8668 ntAPPRIS P3 TSL 1 (best) BASIC21.5■■□□□ 1.03
SYNE3Q6ZMZ3 MAP4K4-202ENST00000324219 7526 ntTSL 5 BASIC21.5■■□□□ 1.03
SYNE3Q6ZMZ3 ARHGEF28-214ENST00000545377 6351 ntAPPRIS P3 TSL 5 BASIC21.5■■□□□ 1.03
SYNE3Q6ZMZ3 KCNQ2-213ENST00000626839 9213 ntAPPRIS ALT1 TSL 1 (best) BASIC21.5■■□□□ 1.03
SYNE3Q6ZMZ3 CD1E-205ENST00000368160 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC21.5■■□□□ 1.03
SYNE3Q6ZMZ3 AC020661.1-201ENST00000503052 1584 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
SYNE3Q6ZMZ3 MCRS1-202ENST00000357123 1428 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
SYNE3Q6ZMZ3 CRADD-202ENST00000542893 1403 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
SYNE3Q6ZMZ3 LCE3C-201ENST00000333881 425 ntAPPRIS P1 BASIC21.5■■□□□ 1.03
SYNE3Q6ZMZ3 EDARADD-201ENST00000334232 858 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
SYNE3Q6ZMZ3 NDUFA13-201ENST00000428459 576 ntTSL 2 BASIC21.5■■□□□ 1.03
SYNE3Q6ZMZ3 AC007731.5-201ENST00000429594 644 ntAPPRIS P1 TSL 5 BASIC21.5■■□□□ 1.03
SYNE3Q6ZMZ3 ST6GALNAC4P1-201ENST00000435385 499 ntBASIC21.5■■□□□ 1.03
SYNE3Q6ZMZ3 KRT18P21-201ENST00000515767 1272 ntBASIC21.5■■□□□ 1.03
Retrieved 100 of 98,524 protein–RNA pairs in 45.4 ms