Protein–RNA interactions for Protein: Q6P9A3

ZNF549, Zinc finger protein 549, humanhuman

Predictions only

Length 640 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF549Q6P9A3 BANP-223ENST00000538234 2372 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
ZNF549Q6P9A3 FAM212A-201ENST00000333323 1040 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
ZNF549Q6P9A3 INSIG1-202ENST00000342407 1127 ntTSL 2 BASIC18.16■□□□□ 0.5
ZNF549Q6P9A3 CD1E-211ENST00000368166 1271 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
ZNF549Q6P9A3 AC007952.1-201ENST00000399087 553 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
ZNF549Q6P9A3 AC007952.2-202ENST00000399093 556 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
ZNF549Q6P9A3 HYAL3-203ENST00000415204 959 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
ZNF549Q6P9A3 DCTN3-209ENST00000477738 713 ntTSL 3 BASIC18.16■□□□□ 0.5
ZNF549Q6P9A3 TMA16-209ENST00000513272 803 ntTSL 2 BASIC18.16■□□□□ 0.5
ZNF549Q6P9A3 AC024243.1-201ENST00000609234 778 ntBASIC18.16■□□□□ 0.5
ZNF549Q6P9A3 AC106017.2-202ENST00000628484 536 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
ZNF549Q6P9A3 AL590627.2-201ENST00000637510 144 ntTSL 5 BASIC18.16■□□□□ 0.5
ZNF549Q6P9A3 SHISA3-201ENST00000319234 1971 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
ZNF549Q6P9A3 CDX4-201ENST00000373514 1515 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
ZNF549Q6P9A3 NCF1B-201ENST00000423083 1516 ntTSL 2 BASIC18.16■□□□□ 0.5
ZNF549Q6P9A3 C22orf39-205ENST00000542103 1523 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
ZNF549Q6P9A3 CDK5R1-201ENST00000313401 4325 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
ZNF549Q6P9A3 PACSIN2-203ENST00000402229 1883 ntAPPRIS P1 TSL 5 BASIC18.16■□□□□ 0.5
ZNF549Q6P9A3 TFCP2-204ENST00000548115 1862 ntTSL 5 BASIC18.16■□□□□ 0.5
ZNF549Q6P9A3 CASKIN2-205ENST00000581870 1612 ntTSL 2 BASIC18.16■□□□□ 0.5
ZNF549Q6P9A3 COL5A3-201ENST00000264828 6174 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
ZNF549Q6P9A3 MEN1-203ENST00000337652 3162 ntAPPRIS P3 TSL 5 BASIC18.16■□□□□ 0.5
ZNF549Q6P9A3 IGSF9-206ENST00000611023 2663 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
ZNF549Q6P9A3 AGPAT3-201ENST00000291572 5546 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
ZNF549Q6P9A3 AC090206.1-201ENST00000615734 1678 ntTSL 5 BASIC18.15■□□□□ 0.5
ZNF549Q6P9A3 C2CD2L-201ENST00000336702 4771 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
ZNF549Q6P9A3 ZNF385B-204ENST00000410066 3288 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
ZNF549Q6P9A3 CSK-201ENST00000220003 2767 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
ZNF549Q6P9A3 AC138028.4-201ENST00000564984 1845 ntBASIC18.15■□□□□ 0.5
ZNF549Q6P9A3 USP18-201ENST00000215794 2129 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
ZNF549Q6P9A3 CT47A4-201ENST00000415858 1298 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
ZNF549Q6P9A3 CT47A9-201ENST00000417256 1298 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
ZNF549Q6P9A3 CT47A6-201ENST00000419194 1298 ntAPPRIS P1 TSL 5 BASIC18.15■□□□□ 0.5
ZNF549Q6P9A3 CT47A10-201ENST00000430448 1298 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
ZNF549Q6P9A3 GRAMD4P1-201ENST00000435181 1110 ntBASIC18.15■□□□□ 0.5
ZNF549Q6P9A3 CT47A5-201ENST00000439466 1298 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
ZNF549Q6P9A3 CT47A3-201ENST00000441330 1298 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
ZNF549Q6P9A3 CT47A8-201ENST00000457977 1298 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
ZNF549Q6P9A3 CT47A2-201ENST00000458218 1298 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
ZNF549Q6P9A3 EHMT1-211ENST00000482340 691 ntTSL 5 BASIC18.15■□□□□ 0.5
ZNF549Q6P9A3 MIR3180-4-201ENST00000582223 153 ntBASIC18.15■□□□□ 0.5
ZNF549Q6P9A3 NUDT16L1-203ENST00000586252 922 ntTSL 3 BASIC18.15■□□□□ 0.5
ZNF549Q6P9A3 DNAJB6-218ENST00000634080 1005 ntTSL 2 BASIC18.15■□□□□ 0.5
ZNF549Q6P9A3 AC009542.2-201ENST00000637483 1189 ntTSL 5 BASIC18.15■□□□□ 0.5
ZNF549Q6P9A3 TNPO2-201ENST00000356861 4962 ntAPPRIS ALT1 TSL 1 (best) BASIC18.15■□□□□ 0.5
ZNF549Q6P9A3 SLC35F5-201ENST00000245680 4412 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
ZNF549Q6P9A3 UBN1-201ENST00000262376 6252 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
ZNF549Q6P9A3 NPFFR2-201ENST00000308744 1922 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
ZNF549Q6P9A3 ELP5-214ENST00000574993 2209 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
ZNF549Q6P9A3 TIMM8A-201ENST00000372902 1664 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
ZNF549Q6P9A3 AC067852.2-201ENST00000590513 2313 ntBASIC18.15■□□□□ 0.5
ZNF549Q6P9A3 DHRS2-201ENST00000250383 1705 ntAPPRIS P3 TSL 1 (best) BASIC18.15■□□□□ 0.5
ZNF549Q6P9A3 LPAR2-201ENST00000407877 1791 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.5
ZNF549Q6P9A3 SEMA3B-202ENST00000418576 1765 ntTSL 2 BASIC18.14■□□□□ 0.5
ZNF549Q6P9A3 ACD-215ENST00000620761 1483 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.5
ZNF549Q6P9A3 OSR2-201ENST00000297565 1838 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.5
ZNF549Q6P9A3 CIAO1-203ENST00000488633 1533 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
ZNF549Q6P9A3 AL024508.2-201ENST00000607749 1894 ntBASIC18.14■□□□□ 0.49
ZNF549Q6P9A3 SLC22A4-201ENST00000200652 2201 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
ZNF549Q6P9A3 ZNF133-211ENST00000538547 2245 ntTSL 2 BASIC18.14■□□□□ 0.49
ZNF549Q6P9A3 ACADVL-205ENST00000543245 2227 ntTSL 2 BASIC18.14■□□□□ 0.49
ZNF549Q6P9A3 ESPN-216ENST00000636330 4731 ntAPPRIS ALT2 TSL 5 BASIC18.14■□□□□ 0.49
ZNF549Q6P9A3 AKT1S1-207ENST00000391835 3075 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
ZNF549Q6P9A3 IFI6-201ENST00000339145 822 ntAPPRIS P4 TSL 2 BASIC18.14■□□□□ 0.49
ZNF549Q6P9A3 AC131097.3-201ENST00000413820 1228 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
ZNF549Q6P9A3 ECEL1P3-201ENST00000427961 737 ntBASIC18.14■□□□□ 0.49
ZNF549Q6P9A3 ZNF534-203ENST00000432303 956 ntTSL 2 BASIC18.14■□□□□ 0.49
ZNF549Q6P9A3 AL162457.2-201ENST00000447909 937 ntTSL 3 BASIC18.14■□□□□ 0.49
ZNF549Q6P9A3 ADCYAP1-202ENST00000450565 918 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
ZNF549Q6P9A3 DUT-205ENST00000558813 769 ntTSL 2 BASIC18.14■□□□□ 0.49
ZNF549Q6P9A3 BCL2L12-208ENST00000600947 633 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
ZNF549Q6P9A3 AC145285.6-201ENST00000604632 637 ntBASIC18.14■□□□□ 0.49
ZNF549Q6P9A3 PITPNB-211ENST00000634017 1017 ntAPPRIS ALT1 TSL 2 BASIC18.14■□□□□ 0.49
ZNF549Q6P9A3 UBQLN4-201ENST00000368309 3576 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
ZNF549Q6P9A3 TMC6-203ENST00000392467 2833 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
ZNF549Q6P9A3 CYP4F2-201ENST00000011989 2067 ntAPPRIS ALT1 TSL 1 (best) BASIC18.14■□□□□ 0.49
ZNF549Q6P9A3 FO681492.1-203ENST00000622861 1362 ntAPPRIS ALT2 TSL 5 BASIC18.14■□□□□ 0.49
ZNF549Q6P9A3 RAB11FIP2-202ENST00000369199 6119 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
ZNF549Q6P9A3 HGFAC-201ENST00000382774 2159 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
ZNF549Q6P9A3 ITGA6-201ENST00000264107 5618 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
ZNF549Q6P9A3 ZIC1-201ENST00000282928 5241 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
ZNF549Q6P9A3 GPRC5B-201ENST00000300571 5213 ntAPPRIS P2 TSL 1 (best) BASIC18.14■□□□□ 0.49
ZNF549Q6P9A3 PTP4A3-202ENST00000349124 2710 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
ZNF549Q6P9A3 MYOZ3-203ENST00000517768 1451 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
ZNF549Q6P9A3 FIBIN-201ENST00000318627 1938 ntAPPRIS P1 BASIC18.13■□□□□ 0.49
ZNF549Q6P9A3 ZNF131-206ENST00000505606 3209 ntAPPRIS P1 TSL 5 BASIC18.13■□□□□ 0.49
ZNF549Q6P9A3 AGER-205ENST00000375069 1538 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
ZNF549Q6P9A3 AHCYL2-201ENST00000325006 5056 ntAPPRIS P3 TSL 1 (best) BASIC18.13■□□□□ 0.49
ZNF549Q6P9A3 THAP3-203ENST00000377627 2053 ntAPPRIS P3 TSL 2 BASIC18.13■□□□□ 0.49
ZNF549Q6P9A3 COL18A1-202ENST00000355480 5924 ntAPPRIS P3 TSL 1 (best) BASIC18.13■□□□□ 0.49
ZNF549Q6P9A3 NRBP1-204ENST00000379863 2174 ntTSL 5 BASIC18.13■□□□□ 0.49
ZNF549Q6P9A3 NPBWR1-201ENST00000331251 2687 ntAPPRIS P1 BASIC18.13■□□□□ 0.49
ZNF549Q6P9A3 HCN4-201ENST00000261917 7228 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
ZNF549Q6P9A3 CCDC92-201ENST00000238156 2787 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
ZNF549Q6P9A3 PDE9A-213ENST00000398236 1776 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
ZNF549Q6P9A3 UPK3B-201ENST00000257632 1296 ntAPPRIS P5 TSL 2 BASIC18.13■□□□□ 0.49
ZNF549Q6P9A3 AL161452.1-201ENST00000415062 1117 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
ZNF549Q6P9A3 GXYLT1P3-201ENST00000453058 1193 ntBASIC18.13■□□□□ 0.49
ZNF549Q6P9A3 CHCHD6-204ENST00000508789 1159 ntAPPRIS ALT2 TSL 1 (best) BASIC18.13■□□□□ 0.49
ZNF549Q6P9A3 LINC01024-205ENST00000521563 939 ntTSL 3 BASIC18.13■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 60.6 ms