Protein–RNA interactions for Protein: Q6A163

KRT39, Keratin, type I cytoskeletal 39, humanhuman

Predictions only

Length 491 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KRT39Q6A163 CLIP2-201ENST00000223398 5563 ntAPPRIS P1 TSL 5 BASIC19.75■□□□□ 0.75
KRT39Q6A163 LY6E-203ENST00000517503 1335 ntAPPRIS ALT2 TSL 3 BASIC19.75■□□□□ 0.75
KRT39Q6A163 SCYL1-202ENST00000279270 1659 ntTSL 5 BASIC19.75■□□□□ 0.75
KRT39Q6A163 TIMM8A-201ENST00000372902 1664 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
KRT39Q6A163 C19orf48-202ENST00000391812 1666 ntAPPRIS P1 TSL 2 BASIC19.75■□□□□ 0.75
KRT39Q6A163 ZBED3-AS1-208ENST00000512001 1668 ntTSL 3 BASIC19.75■□□□□ 0.75
KRT39Q6A163 BAG5-201ENST00000299204 4848 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
KRT39Q6A163 C19orf57-208ENST00000591586 1559 ntAPPRIS ALT2 TSL 5 BASIC19.74■□□□□ 0.75
KRT39Q6A163 TBC1D3I-202ENST00000618620 1900 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
KRT39Q6A163 GPC2-201ENST00000292377 2532 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
KRT39Q6A163 ZFC3H1-211ENST00000552037 1484 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
KRT39Q6A163 CHRFAM7A-202ENST00000397827 2794 ntTSL 5 BASIC19.74■□□□□ 0.75
KRT39Q6A163 LYSMD4-210ENST00000545021 2431 ntTSL 4 BASIC19.74■□□□□ 0.75
KRT39Q6A163 GGT3P-201ENST00000412448 2340 ntTSL 2 BASIC19.74■□□□□ 0.75
KRT39Q6A163 DNLZ-202ENST00000371739 2934 ntTSL 5 BASIC19.74■□□□□ 0.75
KRT39Q6A163 SLC29A4-202ENST00000396872 5685 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
KRT39Q6A163 WNT9B-201ENST00000290015 1376 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
KRT39Q6A163 SSC4D-201ENST00000275560 2801 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
KRT39Q6A163 STK25-203ENST00000403346 2210 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
KRT39Q6A163 AC104076.2-201ENST00000448912 469 ntBASIC19.74■□□□□ 0.75
KRT39Q6A163 AC107464.1-203ENST00000468356 2120 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
KRT39Q6A163 WDR45-218ENST00000473974 1077 ntTSL 5 BASIC19.74■□□□□ 0.75
KRT39Q6A163 ULK4P3-205ENST00000568486 1158 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
KRT39Q6A163 ELAC2-212ENST00000578071 579 ntTSL 4 BASIC19.74■□□□□ 0.75
KRT39Q6A163 RN7SL850P-201ENST00000579959 291 ntBASIC19.74■□□□□ 0.75
KRT39Q6A163 CENPX-206ENST00000580435 710 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
KRT39Q6A163 H3F3B-206ENST00000587560 551 ntAPPRIS P1 TSL 2 BASIC19.74■□□□□ 0.75
KRT39Q6A163 USF2-205ENST00000594064 1179 ntTSL 2 BASIC19.74■□□□□ 0.75
KRT39Q6A163 MCRS1-202ENST00000357123 1428 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
KRT39Q6A163 CRADD-202ENST00000542893 1403 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
KRT39Q6A163 IRGC-201ENST00000244314 1662 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
KRT39Q6A163 PPP2R2C-209ENST00000515571 1832 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
KRT39Q6A163 SRRM2-AS1-203ENST00000571305 1344 ntTSL 2 BASIC19.74■□□□□ 0.75
KRT39Q6A163 AKAP17A-201ENST00000313871 3204 ntAPPRIS P2 TSL 1 (best) BASIC19.74■□□□□ 0.75
KRT39Q6A163 AL590648.2-201ENST00000427949 2225 ntTSL 2 BASIC19.74■□□□□ 0.75
KRT39Q6A163 TPGS2-219ENST00000593035 1727 ntAPPRIS ALT2 TSL 2 BASIC19.73■□□□□ 0.75
KRT39Q6A163 TTLL9-205ENST00000375938 2623 ntAPPRIS P2 TSL 2 BASIC19.73■□□□□ 0.75
KRT39Q6A163 DPAGT1-203ENST00000409993 3274 ntAPPRIS P1 TSL 2 BASIC19.73■□□□□ 0.75
KRT39Q6A163 CCKBR-203ENST00000525462 2138 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
KRT39Q6A163 DSCR9-201ENST00000454482 1644 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
KRT39Q6A163 PHYKPL-201ENST00000308158 2038 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
KRT39Q6A163 DCST1-204ENST00000423025 2199 ntAPPRIS ALT2 TSL 2 BASIC19.73■□□□□ 0.75
KRT39Q6A163 PNMA6E-201ENST00000445091 2192 ntAPPRIS P1 TSL 2 BASIC19.73■□□□□ 0.75
KRT39Q6A163 HMGA1-205ENST00000447654 2159 ntAPPRIS P4 TSL 1 (best) BASIC19.73■□□□□ 0.75
KRT39Q6A163 RNFT2-209ENST00000622220 2176 ntTSL 5 BASIC19.73■□□□□ 0.75
KRT39Q6A163 KRT13-201ENST00000246635 1699 ntAPPRIS P4 TSL 1 (best) BASIC19.73■□□□□ 0.75
KRT39Q6A163 TSPY8-203ENST00000383005 435 ntTSL 5 BASIC19.73■□□□□ 0.75
KRT39Q6A163 AC007731.5-201ENST00000429594 644 ntAPPRIS P1 TSL 5 BASIC19.73■□□□□ 0.75
KRT39Q6A163 HOMER2P1-201ENST00000455653 964 ntBASIC19.73■□□□□ 0.75
KRT39Q6A163 SNX5-210ENST00000481323 562 ntTSL 3 BASIC19.73■□□□□ 0.75
KRT39Q6A163 SLC52A2-205ENST00000526752 710 ntTSL 3 BASIC19.73■□□□□ 0.75
KRT39Q6A163 NEK7-207ENST00000538004 1036 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
KRT39Q6A163 CADM1-222ENST00000616271 1246 ntTSL 5 BASIC19.73■□□□□ 0.75
KRT39Q6A163 DENND2A-201ENST00000275884 3735 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
KRT39Q6A163 PLD3-205ENST00000409419 1966 ntAPPRIS P1 TSL 5 BASIC19.73■□□□□ 0.75
KRT39Q6A163 IDUA-210ENST00000514224 2130 ntTSL 2 BASIC19.73■□□□□ 0.75
KRT39Q6A163 REXO1L9P-201ENST00000604264 2108 ntBASIC19.73■□□□□ 0.75
KRT39Q6A163 MID1IP1-202ENST00000378474 1889 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
KRT39Q6A163 SCYL1-203ENST00000420247 2583 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
KRT39Q6A163 PCCA-203ENST00000376286 2481 ntTSL 2 BASIC19.73■□□□□ 0.75
KRT39Q6A163 PTGES-201ENST00000340607 1774 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
KRT39Q6A163 MAP4K4-204ENST00000350198 7316 ntTSL 5 BASIC19.72■□□□□ 0.75
KRT39Q6A163 CHRNA4-207ENST00000615287 5643 ntTSL 5 BASIC19.72■□□□□ 0.75
KRT39Q6A163 CLASRP-203ENST00000391953 1941 ntTSL 2 BASIC19.72■□□□□ 0.75
KRT39Q6A163 SLC39A3-202ENST00000455372 2940 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
KRT39Q6A163 EGFL6-202ENST00000380602 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC19.72■□□□□ 0.75
KRT39Q6A163 ZNF274-212ENST00000617501 2538 ntAPPRIS P4 TSL 1 (best) BASIC19.72■□□□□ 0.75
KRT39Q6A163 EIF2B5-201ENST00000273783 2655 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
KRT39Q6A163 UBP1-202ENST00000283629 4148 ntAPPRIS P3 TSL 1 (best) BASIC19.72■□□□□ 0.75
KRT39Q6A163 ZFYVE21-202ENST00000311141 1383 ntAPPRIS P3 TSL 1 (best) BASIC19.72■□□□□ 0.75
KRT39Q6A163 FCMR-201ENST00000367091 1950 ntAPPRIS P3 TSL 1 (best) BASIC19.72■□□□□ 0.75
KRT39Q6A163 CACNA1B-204ENST00000371357 9642 ntAPPRIS ALT2 TSL 5 BASIC19.72■□□□□ 0.75
KRT39Q6A163 STRA6-209ENST00000563965 2565 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
KRT39Q6A163 DBN1-201ENST00000292385 3072 ntAPPRIS P4 TSL 1 (best) BASIC19.72■□□□□ 0.75
KRT39Q6A163 NDUFAF2-201ENST00000296597 719 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
KRT39Q6A163 WNT5B-201ENST00000310594 2184 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
KRT39Q6A163 EDARADD-201ENST00000334232 858 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
KRT39Q6A163 KIRREL3-AS3-201ENST00000404882 831 ntBASIC19.72■□□□□ 0.75
KRT39Q6A163 AC004080.5-201ENST00000498652 368 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
KRT39Q6A163 GSTZ1-218ENST00000557053 580 ntTSL 3 BASIC19.72■□□□□ 0.75
KRT39Q6A163 AC126696.3-202ENST00000570159 553 ntTSL 5 BASIC19.72■□□□□ 0.75
KRT39Q6A163 MED9-202ENST00000580462 565 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
KRT39Q6A163 AC008687.5-201ENST00000593746 558 ntBASIC19.72■□□□□ 0.75
KRT39Q6A163 SAMD11-212ENST00000617307 2314 ntAPPRIS ALT2 TSL 5 BASIC19.72■□□□□ 0.75
KRT39Q6A163 C10orf142-201ENST00000619243 1110 ntAPPRIS P2 TSL 2 BASIC19.72■□□□□ 0.75
KRT39Q6A163 AC079602.3-201ENST00000623931 403 ntBASIC19.72■□□□□ 0.75
KRT39Q6A163 ITPK1-202ENST00000354313 2803 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
KRT39Q6A163 PNLDC1-207ENST00000610273 1940 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
KRT39Q6A163 CCDC88C-203ENST00000389856 1641 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
KRT39Q6A163 ARPC4-201ENST00000397261 2582 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
KRT39Q6A163 RCAN3-205ENST00000436717 2574 ntTSL 3 BASIC19.72■□□□□ 0.75
KRT39Q6A163 TCP11-228ENST00000611141 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC19.72■□□□□ 0.75
KRT39Q6A163 ACSL6-205ENST00000379246 2622 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
KRT39Q6A163 RXRB-202ENST00000374685 2846 ntAPPRIS ALT1 TSL 1 (best) BASIC19.71■□□□□ 0.75
KRT39Q6A163 AL391807.1-203ENST00000604392 2365 ntBASIC19.71■□□□□ 0.75
KRT39Q6A163 PMAIP1-202ENST00000316660 1948 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
KRT39Q6A163 RREB1-201ENST00000334984 5789 ntAPPRIS ALT2 TSL 1 (best) BASIC19.71■□□□□ 0.75
KRT39Q6A163 OGFOD2-212ENST00000538755 1949 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
KRT39Q6A163 GGCT-202ENST00000275428 1173 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
KRT39Q6A163 GNGT2-201ENST00000300406 889 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Retrieved 100 of 98,524 protein–RNA pairs in 42.2 ms