Protein–RNA interactions for Protein: P51790

CLCN3, H(+)/Cl(-) exchange transporter 3, humanhuman

Predictions only

Length 818 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLCN3P51790 AGAP4-201ENST00000311652 2715 ntAPPRIS ALT2 TSL 1 (best) BASIC20.04■□□□□ 0.8
CLCN3P51790 KCNQ5-202ENST00000355194 6566 ntAPPRIS ALT1 TSL 5 BASIC20.04■□□□□ 0.8
CLCN3P51790 KCNQ5-206ENST00000402622 6596 ntAPPRIS ALT2 TSL 5 BASIC20.04■□□□□ 0.8
CLCN3P51790 RARA-201ENST00000254066 2414 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
CLCN3P51790 DYNC1LI2-201ENST00000258198 4515 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
CLCN3P51790 ZNF623-203ENST00000526926 2612 ntAPPRIS ALT2 TSL 2 BASIC20.04■□□□□ 0.8
CLCN3P51790 CIAO1-203ENST00000488633 1533 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
CLCN3P51790 BIRC7-203ENST00000395306 593 ntTSL 2 BASIC20.04■□□□□ 0.8
CLCN3P51790 NUS1P2-201ENST00000417358 873 ntBASIC20.04■□□□□ 0.8
CLCN3P51790 RPP14-206ENST00000466547 805 ntAPPRIS P1 TSL 3 BASIC20.04■□□□□ 0.8
CLCN3P51790 CDV3-207ENST00000508481 661 ntTSL 3 BASIC20.04■□□□□ 0.8
CLCN3P51790 AL512357.1-201ENST00000557687 518 ntTSL 4 BASIC20.04■□□□□ 0.8
CLCN3P51790 CTDNEP1-207ENST00000572043 857 ntTSL 3 BASIC20.04■□□□□ 0.8
CLCN3P51790 AL353801.3-201ENST00000609898 542 ntBASIC20.04■□□□□ 0.8
CLCN3P51790 KDM2A-202ENST00000398645 6511 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
CLCN3P51790 CABP1-201ENST00000288616 1369 ntAPPRIS P4 TSL 1 (best) BASIC20.04■□□□□ 0.8
CLCN3P51790 CSF3-206ENST00000577675 1360 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
CLCN3P51790 PSTK-201ENST00000368887 1705 ntAPPRIS P2 TSL 1 (best) BASIC20.04■□□□□ 0.8
CLCN3P51790 CDK17-203ENST00000543119 2442 ntTSL 2 BASIC20.04■□□□□ 0.8
CLCN3P51790 LRRC14-201ENST00000292524 5328 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
CLCN3P51790 IFRD2-204ENST00000436390 2275 ntAPPRIS P1 TSL 2 BASIC20.04■□□□□ 0.8
CLCN3P51790 RHOT1-202ENST00000354266 2919 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
CLCN3P51790 ZFP64-206ENST00000371523 2234 ntTSL 2 BASIC20.03■□□□□ 0.8
CLCN3P51790 TP53I3-202ENST00000335934 1635 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
CLCN3P51790 TULP1-201ENST00000229771 2162 ntAPPRIS P2 TSL 1 (best) BASIC20.03■□□□□ 0.8
CLCN3P51790 FIP1L1-202ENST00000337488 2198 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
CLCN3P51790 FPGS-203ENST00000373247 2279 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
CLCN3P51790 HYI-201ENST00000372425 1265 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
CLCN3P51790 CHCHD1-201ENST00000372833 835 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
CLCN3P51790 SEC61G-203ENST00000415949 732 ntAPPRIS P1 TSL 5 BASIC20.03■□□□□ 0.8
CLCN3P51790 MINOS1P3-201ENST00000457048 203 ntBASIC20.03■□□□□ 0.8
CLCN3P51790 MIR3936HG-202ENST00000457998 733 ntTSL 2 BASIC20.03■□□□□ 0.8
CLCN3P51790 AC008610.1-201ENST00000504573 393 ntTSL 2 BASIC20.03■□□□□ 0.8
CLCN3P51790 FICD-205ENST00000552758 603 ntTSL 2 BASIC20.03■□□□□ 0.8
CLCN3P51790 ASF1B-205ENST00000592798 769 ntTSL 2 BASIC20.03■□□□□ 0.8
CLCN3P51790 ANKRD20A8P-203ENST00000641373 517 ntBASIC20.03■□□□□ 0.8
CLCN3P51790 ISLR2-208ENST00000565159 2824 ntAPPRIS P1 TSL 3 BASIC20.03■□□□□ 0.8
CLCN3P51790 LRRC27-201ENST00000344079 1809 ntAPPRIS ALT2 TSL 2 BASIC20.03■□□□□ 0.8
CLCN3P51790 ITGBL1-202ENST00000376180 2494 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
CLCN3P51790 TMEM132A-202ENST00000453848 3346 ntAPPRIS ALT2 TSL 1 (best) BASIC20.03■□□□□ 0.8
CLCN3P51790 MARK1-203ENST00000402574 5273 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
CLCN3P51790 FMR1-206ENST00000370477 3437 ntTSL 5 BASIC20.03■□□□□ 0.8
CLCN3P51790 KMT5B-205ENST00000402789 1599 ntTSL 5 BASIC20.03■□□□□ 0.8
CLCN3P51790 MAZ-212ENST00000568282 1593 ntTSL 5 BASIC20.03■□□□□ 0.8
CLCN3P51790 RIMBP3C-202ENST00000433039 5784 ntAPPRIS P2 BASIC20.02■□□□□ 0.8
CLCN3P51790 FAM198A-202ENST00000430121 3121 ntAPPRIS P2 TSL 5 BASIC20.02■□□□□ 0.8
CLCN3P51790 SMN1-204ENST00000506163 1445 ntAPPRIS ALT2 TSL 1 (best) BASIC20.02■□□□□ 0.8
CLCN3P51790 ECSIT-202ENST00000270517 1700 ntAPPRIS P3 TSL 1 (best) BASIC20.02■□□□□ 0.8
CLCN3P51790 TMEM198-202ENST00000373883 2218 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
CLCN3P51790 DGKI-202ENST00000424189 4163 ntAPPRIS ALT2 TSL 5 BASIC20.02■□□□□ 0.8
CLCN3P51790 ATP6V0A2-201ENST00000330342 6542 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
CLCN3P51790 EXOSC5-201ENST00000221233 1118 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
CLCN3P51790 HBZ-201ENST00000252951 755 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
CLCN3P51790 CCDC134-201ENST00000255784 1270 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
CLCN3P51790 CDKN1C-201ENST00000380725 1220 ntAPPRIS ALT2 TSL 2 BASIC20.02■□□□□ 0.8
CLCN3P51790 DHRS4-203ENST00000397075 727 ntTSL 2 BASIC20.02■□□□□ 0.8
CLCN3P51790 AC131097.3-201ENST00000413820 1228 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
CLCN3P51790 AQP12A-202ENST00000429564 1110 ntAPPRIS P5 TSL 5 BASIC20.02■□□□□ 0.8
CLCN3P51790 AC068472.1-201ENST00000474589 881 ntBASIC20.02■□□□□ 0.8
CLCN3P51790 AP003555.3-201ENST00000534086 432 ntTSL 4 BASIC20.02■□□□□ 0.8
CLCN3P51790 MIF4GD-205ENST00000578305 569 ntTSL 5 BASIC20.02■□□□□ 0.8
CLCN3P51790 PLAUR-214ENST00000601723 1205 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
CLCN3P51790 CCNC-219ENST00000627680 896 ntTSL 5 BASIC20.02■□□□□ 0.8
CLCN3P51790 C5orf30-203ENST00000515669 1573 ntAPPRIS P1 TSL 3 BASIC20.02■□□□□ 0.8
CLCN3P51790 AC016757.1-205ENST00000470346 1888 ntTSL 2 BASIC20.02■□□□□ 0.8
CLCN3P51790 DPF1-203ENST00000414789 1960 ntTSL 2 BASIC20.02■□□□□ 0.8
CLCN3P51790 HOXA9-201ENST00000343483 2060 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
CLCN3P51790 DDX59-201ENST00000331314 2289 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
CLCN3P51790 FAM160A2-201ENST00000265978 3481 ntAPPRIS P3 TSL 1 (best) BASIC20.02■□□□□ 0.8
CLCN3P51790 GLS-202ENST00000338435 4475 ntAPPRIS ALT1 TSL 1 (best) BASIC20.02■□□□□ 0.8
CLCN3P51790 XYLT2-203ENST00000507602 2107 ntTSL 2 BASIC20.02■□□□□ 0.79
CLCN3P51790 ADCK5-201ENST00000308860 1949 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
CLCN3P51790 P2RY2-201ENST00000311131 2660 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
CLCN3P51790 AP001476.1-201ENST00000451618 2198 ntTSL 2 BASIC20.01■□□□□ 0.79
CLCN3P51790 ISL2-201ENST00000290759 1881 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
CLCN3P51790 DEF8-211ENST00000563795 1767 ntTSL 5 BASIC20.01■□□□□ 0.79
CLCN3P51790 CELF6-204ENST00000543764 1676 ntTSL 2 BASIC20.01■□□□□ 0.79
CLCN3P51790 POLD4-205ENST00000529704 1486 ntTSL 2 BASIC20.01■□□□□ 0.79
CLCN3P51790 UPP1-203ENST00000395564 1375 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
CLCN3P51790 STX8-201ENST00000306357 1246 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
CLCN3P51790 S100A3-201ENST00000368712 579 ntAPPRIS P1 TSL 3 BASIC20.01■□□□□ 0.79
CLCN3P51790 MRPL43-208ENST00000370242 884 ntTSL 2 BASIC20.01■□□□□ 0.79
CLCN3P51790 EGFL7-203ENST00000371699 2125 ntAPPRIS P1 TSL 2 BASIC20.01■□□□□ 0.79
CLCN3P51790 TP53TG1-202ENST00000416560 710 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
CLCN3P51790 ERCC5-207ENST00000535557 1125 ntTSL 5 BASIC20.01■□□□□ 0.79
CLCN3P51790 EFCAB11-211ENST00000556609 568 ntTSL 3 BASIC20.01■□□□□ 0.79
CLCN3P51790 PDCD2L-203ENST00000587065 492 ntTSL 3 BASIC20.01■□□□□ 0.79
CLCN3P51790 BNIP3P18-201ENST00000593976 575 ntBASIC20.01■□□□□ 0.79
CLCN3P51790 AC012366.1-201ENST00000615411 473 ntTSL 5 BASIC20.01■□□□□ 0.79
CLCN3P51790 MBD3-207ENST00000590550 2782 ntTSL 2 BASIC20.01■□□□□ 0.79
CLCN3P51790 SP9-201ENST00000394967 2554 ntAPPRIS P1 TSL 5 BASIC20.01■□□□□ 0.79
CLCN3P51790 TP53BP2-202ENST00000391878 4741 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
CLCN3P51790 PTH2R-204ENST00000617735 2472 ntTSL 2 BASIC20.01■□□□□ 0.79
CLCN3P51790 GNB1-209ENST00000610897 3145 ntAPPRIS P1 TSL 5 BASIC20.01■□□□□ 0.79
CLCN3P51790 TSR1-201ENST00000301364 5188 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
CLCN3P51790 ALDH5A1-201ENST00000348925 2266 ntAPPRIS P4 TSL 1 (best) BASIC20.01■□□□□ 0.79
CLCN3P51790 FAM239A-202ENST00000438107 2155 ntTSL 5 BASIC20.01■□□□□ 0.79
CLCN3P51790 NAT8L-201ENST00000331662 5571 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
CLCN3P51790 AC105285.1-202ENST00000499322 1866 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
CLCN3P51790 PSTPIP1-203ENST00000558012 1896 ntAPPRIS P2 TSL 1 (best) BASIC20.01■□□□□ 0.79
Retrieved 100 of 98,524 protein–RNA pairs in 40.4 ms