Protein–RNA interactions for Protein: P35398

RORA, Nuclear receptor ROR-alpha, humanhuman

Predictions only

Length 523 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RORAP35398 SMAD7-201ENST00000262158 3087 ntAPPRIS P3 TSL 1 (best) BASIC17.37■□□□□ 0.37
RORAP35398 COL4A3BP-201ENST00000261415 2262 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
RORAP35398 RBFADN-201ENST00000562391 1350 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
RORAP35398 DRD5-201ENST00000304374 2330 ntAPPRIS P1 BASIC17.37■□□□□ 0.37
RORAP35398 AC098818.2-201ENST00000564925 2320 ntBASIC17.37■□□□□ 0.37
RORAP35398 C6orf136-203ENST00000376473 1402 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
RORAP35398 TRIM13-206ENST00000457662 1489 ntAPPRIS P3 TSL 1 (best) BASIC17.37■□□□□ 0.37
RORAP35398 RALGAPA1-219ENST00000637992 8512 ntTSL 5 BASIC17.37■□□□□ 0.37
RORAP35398 CMTM7-201ENST00000334983 2038 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
RORAP35398 SAAL1-201ENST00000300013 1518 ntAPPRIS ALT1 TSL 2 BASIC17.37■□□□□ 0.37
RORAP35398 FBXO24-202ENST00000427939 2087 ntTSL 2 BASIC17.36■□□□□ 0.37
RORAP35398 KANK4-204ENST00000371153 4665 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
RORAP35398 C4orf32-201ENST00000309733 8901 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
RORAP35398 ZNF787-202ENST00000587279 1657 ntTSL 2 BASIC17.36■□□□□ 0.37
RORAP35398 ARMC6-202ENST00000392335 2383 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
RORAP35398 CDK17-203ENST00000543119 2442 ntTSL 2 BASIC17.36■□□□□ 0.37
RORAP35398 TRA2A-201ENST00000297071 1845 ntAPPRIS P3 TSL 1 (best) BASIC17.36■□□□□ 0.37
RORAP35398 CARHSP1-201ENST00000311052 746 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
RORAP35398 DBNDD2-202ENST00000360981 1078 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
RORAP35398 DUSP15-203ENST00000375966 1077 ntTSL 3 BASIC17.36■□□□□ 0.37
RORAP35398 ROMO1-205ENST00000397416 288 ntAPPRIS P1 TSL 3 BASIC17.36■□□□□ 0.37
RORAP35398 NUS1P1-201ENST00000446295 882 ntBASIC17.36■□□□□ 0.37
RORAP35398 RPL28-210ENST00000560583 1204 ntTSL 2 BASIC17.36■□□□□ 0.37
RORAP35398 MALAT1-215ENST00000619449 794 ntTSL 3 BASIC17.36■□□□□ 0.37
RORAP35398 TP53I11-223ENST00000627720 195 ntTSL 5 BASIC17.36■□□□□ 0.37
RORAP35398 RGMB-AS1-201ENST00000498871 1903 ntTSL 2 BASIC17.36■□□□□ 0.37
RORAP35398 YY1AP1-213ENST00000405763 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC17.36■□□□□ 0.37
RORAP35398 JMJD7-201ENST00000397299 1416 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
RORAP35398 ACD-215ENST00000620761 1483 ntAPPRIS ALT2 TSL 1 (best) BASIC17.36■□□□□ 0.37
RORAP35398 TRIM61-201ENST00000329314 1582 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
RORAP35398 LINC01700-201ENST00000433952 1598 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
RORAP35398 GTF3C5-202ENST00000372097 2406 ntAPPRIS P3 TSL 1 (best) BASIC17.36■□□□□ 0.37
RORAP35398 SLC2A14-214ENST00000542505 1650 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
RORAP35398 EVX2-201ENST00000308618 4203 ntAPPRIS P1 TSL 5 BASIC17.36■□□□□ 0.37
RORAP35398 CARMIL2-201ENST00000334583 4687 ntAPPRIS P3 TSL 1 (best) BASIC17.35■□□□□ 0.37
RORAP35398 GUCA1A-201ENST00000053469 1874 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
RORAP35398 COBL-210ENST00000632460 1941 ntTSL 5 BASIC17.35■□□□□ 0.37
RORAP35398 GPR75-201ENST00000394705 2115 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
RORAP35398 SMARCC2-203ENST00000394023 4271 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
RORAP35398 ANKRD13D-201ENST00000308440 2219 ntTSL 2 BASIC17.35■□□□□ 0.37
RORAP35398 LIPG-203ENST00000577628 2323 ntTSL 2 BASIC17.35■□□□□ 0.37
RORAP35398 TNNC1-201ENST00000232975 714 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
RORAP35398 GNGT2-201ENST00000300406 889 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
RORAP35398 LINC00265-3P-201ENST00000447588 903 ntBASIC17.35■□□□□ 0.37
RORAP35398 LBX1-AS1-204ENST00000456391 421 ntTSL 5 BASIC17.35■□□□□ 0.37
RORAP35398 TMEM135-209ENST00000532959 1149 ntTSL 2 BASIC17.35■□□□□ 0.37
RORAP35398 PPOX-214ENST00000535223 664 ntTSL 3 BASIC17.35■□□□□ 0.37
RORAP35398 CHRNB4-202ENST00000412074 1355 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
RORAP35398 RPL3-201ENST00000216146 1442 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
RORAP35398 CDK10-208ENST00000505473 1424 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
RORAP35398 TMEM222-201ENST00000374076 1599 ntAPPRIS P2 TSL 1 (best) BASIC17.35■□□□□ 0.37
RORAP35398 MRC2-201ENST00000303375 5988 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
RORAP35398 EPB41L4B-201ENST00000374557 4006 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
RORAP35398 SNX17-201ENST00000233575 2044 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
RORAP35398 TCTN1-223ENST00000550703 2149 ntTSL 2 BASIC17.35■□□□□ 0.37
RORAP35398 SCRIB-201ENST00000320476 5143 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
RORAP35398 ZFP69-202ENST00000372706 2871 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
RORAP35398 FAM124A-202ENST00000322475 4761 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
RORAP35398 SMIM24-201ENST00000215531 1329 ntAPPRIS P2 TSL 1 (best) BASIC17.34■□□□□ 0.37
RORAP35398 FGFR3-202ENST00000340107 4293 ntAPPRIS ALT2 TSL 5 BASIC17.34■□□□□ 0.37
RORAP35398 STRBP-201ENST00000348403 3337 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
RORAP35398 NAF1-202ENST00000422287 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC17.34■□□□□ 0.37
RORAP35398 LINC01315-202ENST00000424852 1142 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
RORAP35398 TPM4P1-201ENST00000436100 807 ntBASIC17.34■□□□□ 0.37
RORAP35398 CCNA1-202ENST00000440264 1758 ntAPPRIS P1 TSL 2 BASIC17.34■□□□□ 0.37
RORAP35398 PCAT7-201ENST00000452148 1164 ntTSL 2 BASIC17.34■□□□□ 0.37
RORAP35398 PRAP1-202ENST00000463201 587 ntAPPRIS ALT2 TSL 1 (best) BASIC17.34■□□□□ 0.37
RORAP35398 ATPIF1-202ENST00000465645 1855 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
RORAP35398 TOB2P1-201ENST00000469761 992 ntBASIC17.34■□□□□ 0.37
RORAP35398 BOC-211ENST00000484034 1286 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
RORAP35398 MARK2-208ENST00000508192 2924 ntAPPRIS P3 TSL 5 BASIC17.34■□□□□ 0.37
RORAP35398 SERPINH1-215ENST00000533603 2299 ntAPPRIS P1 TSL 2 BASIC17.34■□□□□ 0.37
RORAP35398 AC112777.1-201ENST00000540175 1423 ntBASIC17.34■□□□□ 0.37
RORAP35398 HEXDC-203ENST00000577944 1820 ntTSL 5 BASIC17.34■□□□□ 0.37
RORAP35398 ZNF667-AS1-201ENST00000585445 1521 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
RORAP35398 GHDC-212ENST00000593209 1827 ntTSL 5 BASIC17.34■□□□□ 0.37
RORAP35398 AC011247.3-202ENST00000605062 570 ntTSL 4 BASIC17.34■□□□□ 0.37
RORAP35398 IRF5-214ENST00000613821 595 ntTSL 5 BASIC17.34■□□□□ 0.37
RORAP35398 AC243773.1-201ENST00000614759 544 ntTSL 5 BASIC17.34■□□□□ 0.37
RORAP35398 RAB11FIP2-202ENST00000369199 6119 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
RORAP35398 ANKIB1-201ENST00000265742 6081 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
RORAP35398 ITPKB-202ENST00000366784 3146 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
RORAP35398 TRPM2-202ENST00000300482 5989 ntAPPRIS P3 TSL 1 (best) BASIC17.34■□□□□ 0.37
RORAP35398 PTRH1-204ENST00000419060 2692 ntAPPRIS P1 TSL 2 BASIC17.34■□□□□ 0.37
RORAP35398 TMEM8B-204ENST00000439587 2150 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
RORAP35398 TNXA-203ENST00000507684 2038 ntBASIC17.33■□□□□ 0.37
RORAP35398 P2RY6-201ENST00000349767 1700 ntAPPRIS P1 TSL 2 BASIC17.33■□□□□ 0.37
RORAP35398 PRSS33-201ENST00000293851 1694 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
RORAP35398 CAPN1-226ENST00000533820 3083 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
RORAP35398 WNT8A-204ENST00000506684 1543 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
RORAP35398 SMARCC2-201ENST00000267064 4076 ntAPPRIS P4 TSL 1 (best) BASIC17.33■□□□□ 0.36
RORAP35398 PLPBP-201ENST00000328195 2558 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
RORAP35398 SFTPD-201ENST00000372292 1281 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
RORAP35398 ICAM4-202ENST00000380770 1211 ntAPPRIS P3 TSL 1 (best) BASIC17.33■□□□□ 0.36
RORAP35398 MIR149-201ENST00000384879 89 ntBASIC17.33■□□□□ 0.36
RORAP35398 RABL2B-209ENST00000435118 1126 ntAPPRIS P3 TSL 1 (best) BASIC17.33■□□□□ 0.36
RORAP35398 AC092159.3-201ENST00000439196 571 ntTSL 4 BASIC17.33■□□□□ 0.36
RORAP35398 AC079848.1-202ENST00000507924 444 ntTSL 3 BASIC17.33■□□□□ 0.36
RORAP35398 AC105202.1-201ENST00000517833 995 ntTSL 3 BASIC17.33■□□□□ 0.36
RORAP35398 ZFPM1-205ENST00000569086 563 ntTSL 2 BASIC17.33■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 58.1 ms