Protein–RNA interactions for Protein: P13611

VCAN, Versican core protein, humanhuman

Predictions only

Length 3,396 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCANP13611 SLC25A27-202ENST00000411689 2526 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
VCANP13611 GRB7-202ENST00000394204 1667 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
VCANP13611 P2RY6-210ENST00000542092 1674 ntAPPRIS P1 TSL 2 BASIC18.81■□□□□ 0.6
VCANP13611 Z97056.1-201ENST00000433230 556 ntTSL 2 BASIC18.81■□□□□ 0.6
VCANP13611 AC051619.7-201ENST00000568314 623 ntBASIC18.81■□□□□ 0.6
VCANP13611 NUMBL-207ENST00000598779 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
VCANP13611 PDLIM3-202ENST00000284770 1766 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
VCANP13611 SORBS3-221ENST00000523965 2028 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
VCANP13611 KCTD13-207ENST00000568000 2528 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
VCANP13611 SMARCD2-212ENST00000613943 2342 ntTSL 5 BASIC18.8■□□□□ 0.6
VCANP13611 LRPPRC-202ENST00000409659 1610 ntTSL 5 BASIC18.8■□□□□ 0.6
VCANP13611 VGLL4-210ENST00000426568 1428 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
VCANP13611 PCGF2-206ENST00000618941 1499 ntTSL 5 BASIC18.8■□□□□ 0.6
VCANP13611 AC006333.2-201ENST00000607957 2099 ntBASIC18.8■□□□□ 0.6
VCANP13611 NMRK2-201ENST00000168977 1126 ntAPPRIS P3 TSL 2 BASIC18.8■□□□□ 0.6
VCANP13611 NME3-201ENST00000219302 1069 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
VCANP13611 THAP3-202ENST00000307896 1046 ntAPPRIS ALT2 TSL 2 BASIC18.8■□□□□ 0.6
VCANP13611 FBXO44-205ENST00000376768 959 ntTSL 2 BASIC18.8■□□□□ 0.6
VCANP13611 FAM72B-205ENST00000471903 676 ntTSL 5 BASIC18.8■□□□□ 0.6
VCANP13611 AL596325.1-201ENST00000563991 1082 ntBASIC18.8■□□□□ 0.6
VCANP13611 AC011467.2-201ENST00000598425 242 ntBASIC18.8■□□□□ 0.6
VCANP13611 NMRK2-205ENST00000616156 1139 ntAPPRIS ALT2 TSL 5 BASIC18.8■□□□□ 0.6
VCANP13611 FAM3D-201ENST00000358781 1319 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
VCANP13611 ARHGAP22-204ENST00000417247 2340 ntTSL 2 BASIC18.8■□□□□ 0.6
VCANP13611 DET1-207ENST00000564406 2315 ntTSL 2 BASIC18.8■□□□□ 0.6
VCANP13611 METTL21A-208ENST00000448007 1770 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
VCANP13611 COMT-202ENST00000361682 2437 ntAPPRIS P3 TSL 1 (best) BASIC18.8■□□□□ 0.6
VCANP13611 TAF6L-201ENST00000294168 2116 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
VCANP13611 NOTCH2NL-204ENST00000579793 1954 ntAPPRIS ALT2 TSL 2 BASIC18.8■□□□□ 0.6
VCANP13611 ROMO1-205ENST00000397416 288 ntAPPRIS P1 TSL 3 BASIC18.8■□□□□ 0.6
VCANP13611 MRPL52-210ENST00000555345 895 ntTSL 2 BASIC18.8■□□□□ 0.6
VCANP13611 AC025678.2-201ENST00000562061 970 ntBASIC18.8■□□□□ 0.6
VCANP13611 EML2-AS1-203ENST00000623430 886 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
VCANP13611 AC105339.1-204ENST00000636249 355 ntBASIC18.8■□□□□ 0.6
VCANP13611 CBWD1-202ENST00000356521 1706 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
VCANP13611 RCN1-201ENST00000054950 2572 ntAPPRIS P2 TSL 1 (best) BASIC18.8■□□□□ 0.6
VCANP13611 AC009126.1-201ENST00000501338 2245 ntTSL 2 BASIC18.8■□□□□ 0.6
VCANP13611 CARD9-201ENST00000371732 2123 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
VCANP13611 CHST1-201ENST00000308064 2718 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
VCANP13611 HCG4B-203ENST00000450128 991 ntBASIC18.79■□□□□ 0.6
VCANP13611 PLXND1-205ENST00000504689 546 ntTSL 3 BASIC18.79■□□□□ 0.6
VCANP13611 ZNF710-AS1-201ENST00000558334 1168 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
VCANP13611 PUF60-201ENST00000313352 1804 ntAPPRIS ALT1 TSL 1 (best) BASIC18.79■□□□□ 0.6
VCANP13611 MBD1-208ENST00000398493 1845 ntTSL 5 BASIC18.79■□□□□ 0.6
VCANP13611 NSL1-203ENST00000366978 1344 ntTSL 2 BASIC18.79■□□□□ 0.6
VCANP13611 B3GALNT2-201ENST00000313984 1874 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
VCANP13611 RBFOX1-207ENST00000547338 1513 ntTSL 2 BASIC18.79■□□□□ 0.6
VCANP13611 ODC1-201ENST00000234111 2653 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
VCANP13611 BIN1-202ENST00000316724 2693 ntAPPRIS P4 TSL 1 (best) BASIC18.79■□□□□ 0.6
VCANP13611 RAB5C-202ENST00000393860 1912 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
VCANP13611 PMPCA-203ENST00000399219 1987 ntTSL 2 BASIC18.79■□□□□ 0.6
VCANP13611 DNM2-205ENST00000585892 2774 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
VCANP13611 ADIRF-201ENST00000372013 917 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
VCANP13611 LAMTOR4-206ENST00000473459 720 ntTSL 2 BASIC18.79■□□□□ 0.6
VCANP13611 DAD1-205ENST00000543337 501 ntTSL 3 BASIC18.79■□□□□ 0.6
VCANP13611 CITED2-204ENST00000618718 901 ntTSL 2 BASIC18.79■□□□□ 0.6
VCANP13611 SERPINH1-215ENST00000533603 2299 ntAPPRIS P1 TSL 2 BASIC18.79■□□□□ 0.6
VCANP13611 MON1A-202ENST00000417270 2527 ntAPPRIS ALT2 TSL 5 BASIC18.79■□□□□ 0.6
VCANP13611 MAZ-212ENST00000568282 1593 ntTSL 5 BASIC18.79■□□□□ 0.6
VCANP13611 KANK3-203ENST00000593649 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
VCANP13611 GYG2P1-201ENST00000357871 623 ntTSL 3 BASIC18.79■□□□□ 0.6
VCANP13611 HMGN4-201ENST00000377575 1225 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
VCANP13611 AC134772.1-202ENST00000435578 549 ntTSL 4 BASIC18.79■□□□□ 0.6
VCANP13611 LEF1-AS1-201ENST00000436413 1045 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
VCANP13611 NAGK-205ENST00000443938 1221 ntAPPRIS ALT1 TSL 5 BASIC18.79■□□□□ 0.6
VCANP13611 SDCCAG3P1-201ENST00000589292 1150 ntBASIC18.79■□□□□ 0.6
VCANP13611 SLC22A1-201ENST00000324965 1521 ntTSL 5 BASIC18.79■□□□□ 0.6
VCANP13611 CAPZB-204ENST00000375144 1568 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
VCANP13611 IRF7-207ENST00000525445 1588 ntTSL 5 BASIC18.79■□□□□ 0.6
VCANP13611 ZNF580-202ENST00000543039 1707 ntAPPRIS P1 BASIC18.79■□□□□ 0.6
VCANP13611 NF2-201ENST00000334961 2020 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
VCANP13611 IL17RC-205ENST00000413608 2147 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
VCANP13611 KIF12-207ENST00000640217 2194 ntAPPRIS P5 TSL 5 BASIC18.79■□□□□ 0.6
VCANP13611 BTD-202ENST00000383778 2261 ntAPPRIS ALT2 TSL 2 BASIC18.79■□□□□ 0.6
VCANP13611 RASL12-201ENST00000220062 2640 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
VCANP13611 OPN3-201ENST00000366554 2620 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
VCANP13611 GRB10-206ENST00000402497 2289 ntTSL 5 BASIC18.78■□□□□ 0.6
VCANP13611 SIDT2-217ENST00000532062 2143 ntTSL 2 BASIC18.78■□□□□ 0.6
VCANP13611 FARSA-207ENST00000588025 2057 ntTSL 5 BASIC18.78■□□□□ 0.6
VCANP13611 SIGIRR-202ENST00000397632 1598 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
VCANP13611 APOA4-201ENST00000357780 1473 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
VCANP13611 ATP6V0B-201ENST00000236067 944 ntTSL 2 BASIC18.78■□□□□ 0.6
VCANP13611 S100A14-204ENST00000368702 1218 ntAPPRIS P1 TSL 3 BASIC18.78■□□□□ 0.6
VCANP13611 S100A14-206ENST00000476873 1025 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
VCANP13611 BX890604.1-208ENST00000490920 726 ntTSL 2 BASIC18.78■□□□□ 0.6
VCANP13611 ATP6V0B-211ENST00000498664 825 ntTSL 2 BASIC18.78■□□□□ 0.6
VCANP13611 REEP1-209ENST00000541910 969 ntTSL 2 BASIC18.78■□□□□ 0.6
VCANP13611 AC008992.1-201ENST00000591132 446 ntTSL 2 BASIC18.78■□□□□ 0.6
VCANP13611 KIF12-202ENST00000468460 2162 ntAPPRIS ALT2 TSL 5 BASIC18.78■□□□□ 0.6
VCANP13611 SLC2A14-214ENST00000542505 1650 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
VCANP13611 STN1-201ENST00000224950 1417 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
VCANP13611 GUK1-203ENST00000366718 1275 ntAPPRIS P3 TSL 3 BASIC18.78■□□□□ 0.6
VCANP13611 FAM118B-206ENST00000529731 1028 ntTSL 5 BASIC18.78■□□□□ 0.6
VCANP13611 HILS1-202ENST00000545329 423 ntBASIC18.78■□□□□ 0.6
VCANP13611 AC067852.1-201ENST00000585572 594 ntTSL 4 BASIC18.78■□□□□ 0.6
VCANP13611 AC022145.2-201ENST00000598203 171 ntBASIC18.78■□□□□ 0.6
VCANP13611 GNAI1-201ENST00000351004 3347 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
VCANP13611 COQ9-201ENST00000262507 1677 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
VCANP13611 CIRBP-202ENST00000413636 1606 ntTSL 2 BASIC18.78■□□□□ 0.6
VCANP13611 SLC22A17-211ENST00000637426 1563 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 24.1 ms