Protein–RNA interactions for Protein: P01130

LDLR, Low-density lipoprotein receptor, humanhuman

Predictions only

Length 860 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDLRP01130 EGLN1P1-201ENST00000531623 762 ntBASIC17.69■□□□□ 0.42
LDLRP01130 GRAMD4P8-201ENST00000605465 1115 ntBASIC17.69■□□□□ 0.42
LDLRP01130 PHKA1-201ENST00000339490 6121 ntAPPRIS ALT1 TSL 1 (best) BASIC17.69■□□□□ 0.42
LDLRP01130 MXRA8-202ENST00000342753 2231 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
LDLRP01130 C6orf118-201ENST00000230301 1812 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
LDLRP01130 SLC44A3-201ENST00000271227 2388 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
LDLRP01130 PCDH7-201ENST00000361762 6403 ntAPPRIS P3 TSL 1 (best) BASIC17.69■□□□□ 0.42
LDLRP01130 KRT16P6-201ENST00000417510 1873 ntTSL 5 BASIC17.69■□□□□ 0.42
LDLRP01130 F11R-202ENST00000368026 4835 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
LDLRP01130 TFEB-206ENST00000403298 2162 ntAPPRIS P1 TSL 5 BASIC17.69■□□□□ 0.42
LDLRP01130 TSPAN4-204ENST00000397404 1462 ntAPPRIS P1 TSL 5 BASIC17.69■□□□□ 0.42
LDLRP01130 GGT3P-201ENST00000412448 2340 ntTSL 2 BASIC17.69■□□□□ 0.42
LDLRP01130 CDC42EP3-201ENST00000295324 5700 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
LDLRP01130 NCF1-201ENST00000289473 1396 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
LDLRP01130 PSMD8-210ENST00000620216 1538 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
LDLRP01130 TCP11-228ENST00000611141 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
LDLRP01130 SLC6A17-201ENST00000331565 6427 ntAPPRIS P1 TSL 2 BASIC17.68■□□□□ 0.42
LDLRP01130 KLHL21-202ENST00000377663 6445 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
LDLRP01130 TMEM234-201ENST00000309777 1082 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
LDLRP01130 INSIG1-202ENST00000342407 1127 ntTSL 2 BASIC17.68■□□□□ 0.42
LDLRP01130 C7orf50-201ENST00000357429 1294 ntAPPRIS P2 TSL 1 (best) BASIC17.68■□□□□ 0.42
LDLRP01130 AC073343.2-203ENST00000366167 564 ntTSL 4 BASIC17.68■□□□□ 0.42
LDLRP01130 NPM3-201ENST00000370110 877 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
LDLRP01130 TMEM234-203ENST00000373593 1411 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
LDLRP01130 BX664615.1-201ENST00000443558 458 ntBASIC17.68■□□□□ 0.42
LDLRP01130 C5orf30-203ENST00000515669 1573 ntAPPRIS P1 TSL 3 BASIC17.68■□□□□ 0.42
LDLRP01130 KRTCAP3-207ENST00000543753 956 ntAPPRIS P1 TSL 5 BASIC17.68■□□□□ 0.42
LDLRP01130 AC011445.1-201ENST00000601911 877 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
LDLRP01130 BCR-201ENST00000305877 7082 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
LDLRP01130 LYSMD4-201ENST00000332728 2847 ntTSL 4 BASIC17.68■□□□□ 0.42
LDLRP01130 CDKN1B-201ENST00000228872 2657 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
LDLRP01130 MINDY2-202ENST00000450403 4820 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
LDLRP01130 ARSA-201ENST00000216124 2050 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
LDLRP01130 AHRR-209ENST00000512529 1912 ntTSL 5 BASIC17.68■□□□□ 0.42
LDLRP01130 HHATL-201ENST00000310417 1750 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
LDLRP01130 LETM2-208ENST00000524874 1459 ntTSL 5 BASIC17.68■□□□□ 0.42
LDLRP01130 PANX1-202ENST00000436171 2750 ntAPPRIS ALT1 TSL 1 (best) BASIC17.68■□□□□ 0.42
LDLRP01130 EPHX1-201ENST00000272167 1660 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
LDLRP01130 ZNF697-201ENST00000421812 5041 ntAPPRIS P1 TSL 3 BASIC17.67■□□□□ 0.42
LDLRP01130 OLFM2-203ENST00000590841 1665 ntTSL 2 BASIC17.67■□□□□ 0.42
LDLRP01130 C2CD2L-205ENST00000528586 2320 ntTSL 2 BASIC17.67■□□□□ 0.42
LDLRP01130 DDX17-211ENST00000640332 2190 ntAPPRIS P3 TSL 1 (best) BASIC17.67■□□□□ 0.42
LDLRP01130 DDX17-212ENST00000640668 2196 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
LDLRP01130 HOXB1-201ENST00000239174 2020 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
LDLRP01130 PCDHA8-202ENST00000531613 5260 ntAPPRIS P2 TSL 1 (best) BASIC17.67■□□□□ 0.42
LDLRP01130 ISG20-201ENST00000306072 1856 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
LDLRP01130 PIGQ-203ENST00000321878 3006 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
LDLRP01130 RHOB-201ENST00000272233 2372 ntAPPRIS P1 BASIC17.67■□□□□ 0.42
LDLRP01130 HLA-G-205ENST00000428701 1578 ntAPPRIS P2 BASIC17.67■□□□□ 0.42
LDLRP01130 KDSR-202ENST00000406396 5447 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
LDLRP01130 SIN3A-203ENST00000394949 4930 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
LDLRP01130 PLCB3-204ENST00000540288 4469 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
LDLRP01130 TSPY14P-201ENST00000303979 915 ntBASIC17.67■□□□□ 0.42
LDLRP01130 COPE-203ENST00000351079 907 ntTSL 2 BASIC17.67■□□□□ 0.42
LDLRP01130 ZNF32-201ENST00000374433 1137 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
LDLRP01130 CCT7-202ENST00000398422 1234 ntTSL 2 BASIC17.67■□□□□ 0.42
LDLRP01130 CRYGFP-201ENST00000418459 633 ntBASIC17.67■□□□□ 0.42
LDLRP01130 XYLT2-203ENST00000507602 2107 ntTSL 2 BASIC17.67■□□□□ 0.42
LDLRP01130 AC004816.2-201ENST00000622856 284 ntTSL 5 BASIC17.67■□□□□ 0.42
LDLRP01130 PTENP1-AS-201ENST00000627688 873 ntTSL 5 BASIC17.67■□□□□ 0.42
LDLRP01130 ZNF517-201ENST00000359971 2335 ntAPPRIS P1 TSL 4 BASIC17.67■□□□□ 0.42
LDLRP01130 MED25-212ENST00000618715 1467 ntTSL 5 BASIC17.67■□□□□ 0.42
LDLRP01130 ARFIP2-201ENST00000254584 2543 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
LDLRP01130 TXNRD3-202ENST00000523403 2351 ntAPPRIS ALT2 TSL 2 BASIC17.67■□□□□ 0.42
LDLRP01130 RNASEH2C-203ENST00000528220 1337 ntTSL 2 BASIC17.67■□□□□ 0.42
LDLRP01130 C9orf66-201ENST00000382387 2918 ntAPPRIS P1 BASIC17.67■□□□□ 0.42
LDLRP01130 RIC8A-208ENST00000527696 2565 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
LDLRP01130 RPS6KA3-201ENST00000379565 7918 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
LDLRP01130 GNAS-203ENST00000306120 1878 ntBASIC17.67■□□□□ 0.42
LDLRP01130 CCDC92-201ENST00000238156 2787 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
LDLRP01130 FGF17-201ENST00000359441 1714 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
LDLRP01130 PMAIP1-202ENST00000316660 1948 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
LDLRP01130 TRMU-202ENST00000381019 1381 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
LDLRP01130 CACNA1A-201ENST00000360228 8627 ntAPPRIS P4 TSL 1 (best) BASIC17.66■□□□□ 0.42
LDLRP01130 EVPL-202ENST00000586740 6223 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
LDLRP01130 XXYLT1-201ENST00000310380 2727 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
LDLRP01130 AC139713.2-201ENST00000641328 2723 ntBASIC17.66■□□□□ 0.42
LDLRP01130 PRORSD1P-202ENST00000563365 2154 ntBASIC17.66■□□□□ 0.42
LDLRP01130 MCRS1-202ENST00000357123 1428 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
LDLRP01130 OLFM1-201ENST00000252854 2591 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
LDLRP01130 ZNF22-201ENST00000298299 2551 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
LDLRP01130 ARHGEF28-212ENST00000513042 6273 ntAPPRIS ALT2 TSL 5 BASIC17.66■□□□□ 0.42
LDLRP01130 ARHGEF19-201ENST00000270747 3029 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
LDLRP01130 LRRC23-202ENST00000323702 1208 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
LDLRP01130 DYNLT3-203ENST00000432389 719 ntTSL 5 BASIC17.66■□□□□ 0.42
LDLRP01130 C16orf91-201ENST00000442039 978 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
LDLRP01130 LINC01293-201ENST00000453951 1266 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
LDLRP01130 ASPHD1-203ENST00000483405 1115 ntAPPRIS ALT2 TSL 3 BASIC17.66■□□□□ 0.42
LDLRP01130 RAB6A-207ENST00000541588 758 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
LDLRP01130 AP005242.2-201ENST00000580065 1175 ntBASIC17.66■□□□□ 0.42
LDLRP01130 PRLHR-202ENST00000636925 1275 ntAPPRIS P1 BASIC17.66■□□□□ 0.42
LDLRP01130 MYC-208ENST00000641036 567 ntBASIC17.66■□□□□ 0.42
LDLRP01130 HEMK1-206ENST00000455834 1499 ntAPPRIS P1 TSL 5 BASIC17.66■□□□□ 0.42
LDLRP01130 CALHM2-201ENST00000260743 1859 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
LDLRP01130 PRR23B-201ENST00000329447 1896 ntAPPRIS P1 BASIC17.66■□□□□ 0.42
LDLRP01130 CACNA2D2-201ENST00000266039 5476 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
LDLRP01130 CPZ-201ENST00000315782 2136 ntAPPRIS P3 TSL 1 (best) BASIC17.66■□□□□ 0.42
LDLRP01130 SLC6A18-201ENST00000324642 2121 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
LDLRP01130 GPR20-201ENST00000377741 1515 ntAPPRIS P1 TSL 3 BASIC17.66■□□□□ 0.42
LDLRP01130 ETFA-202ENST00000433983 1346 ntTSL 2 BASIC17.66■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 49.8 ms